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Revision 2067

Added by Matt Jones over 20 years ago

Removed the "getdataguide" action as it was always experimental and is no longer used in metacat or morpho.

View differences:

bin/readxml
1
#!/bin/sh
2
#
3
#    Copyright: 2000 Regents of the University of California and the
4
#               National Center for Ecological Analysis and Synthesis
5
#  For Details: http://www.nceas.ucsb.edu/
6
#    File Info: '$Id$'
7
#
8
# This program is free software; you can redistribute it and/or modify
9
# it under the terms of the GNU General Public License as published by
10
# the Free Software Foundation; either version 2 of the License, or
11
# (at your option) any later version.
12
#
13
# This program is distributed in the hope that it will be useful,
14
# but WITHOUT ANY WARRANTY; without even the implied warranty of
15
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
16
# GNU General Public License for more details.
17
#
18
# You should have received a copy of the GNU General Public License
19
# along with this program; if not, write to the Free Software
20
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
21

  
22
PARSER=/usr/local/devtools/xerces-1_1_3/xerces.jar
23
PDIR=/home/computer/$USER/development/xmltodb
24
JDBC=${ORACLE_HOME}/jdbc/lib/classes111.zip
25

  
26
export CPATH=$PDIR/build/metacat.jar:$PARSER:$JDBC
27

  
28
java -cp ${CPATH} edu.ucsb.nceas.metacat.DocumentImpl $@
29 0

  
bin/loadxml
1
#!/bin/sh
2
#
3
#    Copyright: 2000 Regents of the University of California and the
4
#               National Center for Ecological Analysis and Synthesis
5
#  For Details: http://www.nceas.ucsb.edu/
6
#    File Info: '$Id$'
7
#
8
# This program is free software; you can redistribute it and/or modify
9
# it under the terms of the GNU General Public License as published by
10
# the Free Software Foundation; either version 2 of the License, or
11
# (at your option) any later version.
12
#
13
# This program is distributed in the hope that it will be useful,
14
# but WITHOUT ANY WARRANTY; without even the implied warranty of
15
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
16
# GNU General Public License for more details.
17
#
18
# You should have received a copy of the GNU General Public License
19
# along with this program; if not, write to the Free Software
20
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
21

  
22
PARSER=/usr/local/devtools/xerces-1_1_3/xerces.jar
23
PDIR=/home/computer/$USER/development/xmltodb
24
JDBC=${ORACLE_HOME}/jdbc/lib/classes111.zip
25

  
26
export CPATH=$PDIR/build/metacat.jar:$PARSER:$JDBC
27

  
28
java -cp ${CPATH} edu.ucsb.nceas.metacat.DocumentImpl $@
29 0

  
bin/xml2sql
1
#!/bin/sh
2
#
3
#    Copyright: 2000 Regents of the University of California and the
4
#               National Center for Ecological Analysis and Synthesis
5
#  For Details: http://www.nceas.ucsb.edu/
6
#    File Info: '$Id$'
7
#
8
# This program is free software; you can redistribute it and/or modify
9
# it under the terms of the GNU General Public License as published by
10
# the Free Software Foundation; either version 2 of the License, or
11
# (at your option) any later version.
12
#
13
# This program is distributed in the hope that it will be useful,
14
# but WITHOUT ANY WARRANTY; without even the implied warranty of
15
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
16
# GNU General Public License for more details.
17
#
18
# You should have received a copy of the GNU General Public License
19
# along with this program; if not, write to the Free Software
20
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
21

  
22
PARSER=/usr/local/devtools/xerces-1_1_3/xerces.jar
23
PDIR=/home/computer/$USER/development/xmltodb
24
JDBC=${ORACLE_HOME}/jdbc/lib/classes111.zip
25

  
26
export CPATH=$PDIR/build/metacat.jar:$PARSER:$JDBC
27

  
28
echo " "
29
echo "WITH INDEX"
30
echo "----------"
31
echo " "
32
java -cp ${CPATH} edu.ucsb.nceas.metacat.QuerySpecification $1
33
echo " "
34

  
35
echo "NO INDEX"
36
echo "----------"
37
echo " "
38
java -cp ${CPATH} edu.ucsb.nceas.metacat.QuerySpecification -noindex $1
39
echo " "
40 0

  
bin/valxml
1
#!/bin/sh
2
#
3
#    Copyright: 2000 Regents of the University of California and the
4
#               National Center for Ecological Analysis and Synthesis
5
#  For Details: http://www.nceas.ucsb.edu/
6
#    File Info: '$Id$'
7
#
8
# This program is free software; you can redistribute it and/or modify
9
# it under the terms of the GNU General Public License as published by
10
# the Free Software Foundation; either version 2 of the License, or
11
# (at your option) any later version.
12
#
13
# This program is distributed in the hope that it will be useful,
14
# but WITHOUT ANY WARRANTY; without even the implied warranty of
15
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
16
# GNU General Public License for more details.
17
#
18
# You should have received a copy of the GNU General Public License
19
# along with this program; if not, write to the Free Software
20
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
21

  
22
PARSER=/usr/local/devtools/xerces-1_1_3/xerces.jar
23
PDIR=/home/computer/$USER/development/xmltodb
24
JDBC=${ORACLE_HOME}/jdbc/lib/classes111.zip
25

  
26
export CPATH=$PDIR/build/metacat.jar:$PARSER:$JDBC
27

  
28
java -cp ${CPATH} edu.ucsb.nceas.metacat.DBValidate $1
29 0

  
bin/queryxml
1
#!/bin/sh
2
#
3
#    Copyright: 2000 Regents of the University of California and the
4
#               National Center for Ecological Analysis and Synthesis
5
#  For Details: http://www.nceas.ucsb.edu/
6
#    File Info: '$Id$'
7
#
8
# This program is free software; you can redistribute it and/or modify
9
# it under the terms of the GNU General Public License as published by
10
# the Free Software Foundation; either version 2 of the License, or
11
# (at your option) any later version.
12
#
13
# This program is distributed in the hope that it will be useful,
14
# but WITHOUT ANY WARRANTY; without even the implied warranty of
15
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
16
# GNU General Public License for more details.
17
#
18
# You should have received a copy of the GNU General Public License
19
# along with this program; if not, write to the Free Software
20
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
21

  
22
PARSER=/usr/local/devtools/xerces-1_1_3/xerces.jar
23
PDIR=/home/computer/$USER/development/xmltodb
24
JDBC=${ORACLE_HOME}/jdbc/lib/classes111.zip
25

  
26
export CPATH=$PDIR/build/metacat.jar:$PARSER:$JDBC
27

  
28
java -cp ${CPATH} edu.ucsb.nceas.metacat.DBSimpleQuery $1 $2
29 0

  
bin/squeryxml
1
#!/bin/sh
2
#
3
#    Copyright: 2000 Regents of the University of California and the
4
#               National Center for Ecological Analysis and Synthesis
5
#  For Details: http://www.nceas.ucsb.edu/
6
#    File Info: '$Id$'
7
#
8
# This program is free software; you can redistribute it and/or modify
9
# it under the terms of the GNU General Public License as published by
10
# the Free Software Foundation; either version 2 of the License, or
11
# (at your option) any later version.
12
#
13
# This program is distributed in the hope that it will be useful,
14
# but WITHOUT ANY WARRANTY; without even the implied warranty of
15
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
16
# GNU General Public License for more details.
17
#
18
# You should have received a copy of the GNU General Public License
19
# along with this program; if not, write to the Free Software
20
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
21

  
22
PARSER=/usr/local/devtools/xerces-1_1_3/xerces.jar
23
PDIR=/home/computer/$USER/development/xmltodb
24
JDBC=${ORACLE_HOME}/jdbc/lib/classes111.zip
25

  
26
export CPATH=$PDIR/build/metacat.jar:$PARSER:$JDBC
27

  
28
java -cp ${CPATH} edu.ucsb.nceas.metacat.DBQuery $1
29 0

  
src/edu/ucsb/nceas/metacat/QuerySpecification.java
30 30

  
31 31
package edu.ucsb.nceas.metacat;
32 32

  
33
import edu.ucsb.nceas.dbadapter.*;
34

  
35
import java.io.*;
33
import java.io.File;
34
import java.io.FileReader;
35
import java.io.IOException;
36
import java.io.Reader;
37
import java.io.StringReader;
38
import java.util.Enumeration;
36 39
import java.util.Hashtable;
37 40
import java.util.Stack;
38 41
import java.util.Vector;
39
import java.util.Enumeration;
40 42

  
43
import edu.ucsb.nceas.dbadapter.AbstractDatabase;
44

  
41 45
import org.xml.sax.Attributes;
42 46
import org.xml.sax.InputSource;
43 47
import org.xml.sax.SAXException;
44
import org.xml.sax.SAXParseException;
45 48
import org.xml.sax.XMLReader;
49
import org.xml.sax.helpers.DefaultHandler;
46 50
import org.xml.sax.helpers.XMLReaderFactory;
47
import org.xml.sax.helpers.DefaultHandler;
48 51

  
49 52
/**
50
 * A Class that represents a structured query, and can be 
51
 * constructed from an XML serialization conforming to @see pathquery.dtd. 
52
 * The printSQL() method can be used to print a SQL serialization of the query.
53
 * A Class that represents a structured query, and can be constructed from an
54
 * XML serialization conforming to
55
 * 
56
 * @see pathquery.dtd. The printSQL() method can be used to print a SQL
57
 *      serialization of the query.
53 58
 */
54
public class QuerySpecification extends DefaultHandler {
55
 
56
  /** flag determining whether extended query terms are present */
57
  private boolean containsExtendedSQL=false;
58
  /** Identifier for this query document */
59
  private String meta_file_id;
60
  /** Title of this query */
61
  private String queryTitle;
62
  /** List of document types to be returned using package back tracing */
63
  private Vector returnDocList;
64
  /** List of document types to be searched */
65
  private Vector filterDocList;
66
  /** List of fields to be returned in result set */
67
  private Vector returnFieldList;
68
  /** List of users owning documents to be searched */
69
  private Vector ownerList;
70
  /** List of sites/scopes used to constrain search */
71
  private Vector siteList;
72
  /** The root query group that contains the recursive query constraints */
73
  private QueryGroup query = null;
74
 
75
  // Query data structures used temporarily during XML parsing
76
  private Stack elementStack;
77
  private Stack queryStack;
78
  private String currentValue;
79
  private String currentPathexpr;
80
  private String parserName = null;
81
  private String accNumberSeparator = null;
82
  private static final AbstractDatabase dbAdapter = MetaCatUtil.dbAdapter;
83
  
59
public class QuerySpecification extends DefaultHandler
60
{
84 61

  
85
  private boolean percentageSearch = false;
86
  
87
  private String userName = null;
88
  private static final String PUBLIC = "public";
89
  private String [] group = null;
62
    /** flag determining whether extended query terms are present */
63
    private boolean containsExtendedSQL = false;
90 64

  
91
  public static final String ATTRIBUTESYMBOL = "@";
92
  private boolean hasAttributeReturnField = false;
93
  private Hashtable attributeReturnList = new Hashtable();
94
  private int countAttributeReturnField = 0;
95
  /**
96
   * construct an instance of the QuerySpecification class 
97
   *
98
   * @param queryspec the XML representation of the query (should conform
99
   *                  to pathquery.dtd) as a Reader
100
   * @param parserName the fully qualified name of a Java Class implementing
101
   *                  the org.xml.sax.XMLReader interface
102
   */
103
  public QuerySpecification( Reader queryspec, String parserName,
104
         String accNumberSeparator ) throws IOException {
105
    super();
106
    
107
    // Initialize the class variables
108
    returnDocList = new Vector();
109
    filterDocList = new Vector();
110
    elementStack = new Stack();
111
    queryStack   = new Stack();
112
    returnFieldList = new Vector();
113
    ownerList = new Vector();
114
    siteList = new Vector();
115
    this.parserName = parserName;
116
    this.accNumberSeparator = accNumberSeparator;
65
    /** Identifier for this query document */
66
    private String meta_file_id;
117 67

  
118
    // Initialize the parser and read the queryspec
119
    XMLReader parser = initializeParser();
120
    if (parser == null) {
121
      System.err.println("SAX parser not instantiated properly.");
68
    /** Title of this query */
69
    private String queryTitle;
70

  
71
    /** List of document types to be returned using package back tracing */
72
    private Vector returnDocList;
73

  
74
    /** List of document types to be searched */
75
    private Vector filterDocList;
76

  
77
    /** List of fields to be returned in result set */
78
    private Vector returnFieldList;
79

  
80
    /** List of users owning documents to be searched */
81
    private Vector ownerList;
82

  
83
    /** List of sites/scopes used to constrain search */
84
    private Vector siteList;
85

  
86
    /** The root query group that contains the recursive query constraints */
87
    private QueryGroup query = null;
88

  
89
    // Query data structures used temporarily during XML parsing
90
    private Stack elementStack;
91

  
92
    private Stack queryStack;
93

  
94
    private String currentValue;
95

  
96
    private String currentPathexpr;
97

  
98
    private String parserName = null;
99

  
100
    private String accNumberSeparator = null;
101

  
102
    private static final AbstractDatabase dbAdapter = MetaCatUtil.dbAdapter;
103

  
104
    private boolean percentageSearch = false;
105

  
106
    private String userName = null;
107

  
108
    private static final String PUBLIC = "public";
109

  
110
    private String[] group = null;
111

  
112
    public static final String ATTRIBUTESYMBOL = "@";
113

  
114
    private boolean hasAttributeReturnField = false;
115

  
116
    private Hashtable attributeReturnList = new Hashtable();
117

  
118
    private int countAttributeReturnField = 0;
119

  
120
    /**
121
     * construct an instance of the QuerySpecification class
122
     * 
123
     * @param queryspec
124
     *            the XML representation of the query (should conform to
125
     *            pathquery.dtd) as a Reader
126
     * @param parserName
127
     *            the fully qualified name of a Java Class implementing the
128
     *            org.xml.sax.XMLReader interface
129
     */
130
    public QuerySpecification(Reader queryspec, String parserName,
131
            String accNumberSeparator) throws IOException
132
    {
133
        super();
134

  
135
        // Initialize the class variables
136
        returnDocList = new Vector();
137
        filterDocList = new Vector();
138
        elementStack = new Stack();
139
        queryStack = new Stack();
140
        returnFieldList = new Vector();
141
        ownerList = new Vector();
142
        siteList = new Vector();
143
        this.parserName = parserName;
144
        this.accNumberSeparator = accNumberSeparator;
145

  
146
        // Initialize the parser and read the queryspec
147
        XMLReader parser = initializeParser();
148
        if (parser == null) {
149
            System.err.println("SAX parser not instantiated properly.");
150
        }
151
        try {
152
            parser.parse(new InputSource(queryspec));
153
        } catch (SAXException e) {
154
            System.err.println("error parsing data in "
155
                    + "QuerySpecification.QuerySpecification");
156
            System.err.println(e.getMessage());
157
        }
122 158
    }
123
    try {
124
      parser.parse(new InputSource(queryspec));
125
    } catch (SAXException e) {
126
      System.err.println("error parsing data in " + 
127
                         "QuerySpecification.QuerySpecification");
128
      System.err.println(e.getMessage());
159

  
160
    /**
161
     * construct an instance of the QuerySpecification class
162
     * 
163
     * @param queryspec
164
     *            the XML representation of the query (should conform to
165
     *            pathquery.dtd) as a String
166
     * @param parserName
167
     *            the fully qualified name of a Java Class implementing the
168
     *            org.xml.sax.Parser interface
169
     */
170
    public QuerySpecification(String queryspec, String parserName,
171
            String accNumberSeparator) throws IOException
172
    {
173
        this(new StringReader(queryspec), parserName, accNumberSeparator);
129 174
    }
130
  }
131 175

  
132
  /**
133
   * construct an instance of the QuerySpecification class 
134
   *
135
   * @param queryspec the XML representation of the query (should conform
136
   *                  to pathquery.dtd) as a String
137
   * @param parserName the fully qualified name of a Java Class implementing
138
   *                  the org.xml.sax.Parser interface
139
   */
140
  public QuerySpecification( String queryspec, String parserName,
141
         String accNumberSeparator) throws IOException {
142
    this(new StringReader(queryspec), parserName, accNumberSeparator);
143
  }
144
  
145
  /**
146
   * construct an instance of the QuerySpecification class which don't need 
147
   * to parser a xml document
148
   * @param accNumberSeparator  the separator between doc version
149
   */
150
  public QuerySpecification(String accNumberSeparator ) throws IOException 
151
  {
152
    // Initialize the class variables
153
    returnDocList = new Vector();
154
    filterDocList = new Vector();
155
    elementStack = new Stack();
156
    queryStack   = new Stack();
157
    returnFieldList = new Vector();
158
    ownerList = new Vector();
159
    siteList = new Vector();
160
    this.accNumberSeparator = accNumberSeparator;
161
   }
162
  
163
  
164
  /**
165
   * Method to set user name
166
   *
167
   * @param myName  the user name
168
   */
169
  public void setUserName(String myName)
170
  { 
171
    //to lower case
172
    if (myName != null)
176
    /**
177
     * construct an instance of the QuerySpecification class which don't need
178
     * to parser a xml document
179
     * 
180
     * @param accNumberSeparator
181
     *            the separator between doc version
182
     */
183
    public QuerySpecification(String accNumberSeparator) throws IOException
173 184
    {
174
      this.userName = myName.toLowerCase();
185
        // Initialize the class variables
186
        returnDocList = new Vector();
187
        filterDocList = new Vector();
188
        elementStack = new Stack();
189
        queryStack = new Stack();
190
        returnFieldList = new Vector();
191
        ownerList = new Vector();
192
        siteList = new Vector();
193
        this.accNumberSeparator = accNumberSeparator;
175 194
    }
176
    else
195

  
196
    /**
197
     * Method to set user name
198
     * 
199
     * @param myName
200
     *            the user name
201
     */
202
    public void setUserName(String myName)
177 203
    {
178
      this.userName = myName;
204
        //to lower case
205
        if (myName != null) {
206
            this.userName = myName.toLowerCase();
207
        } else {
208
            this.userName = myName;
209
        }
179 210
    }
180
  }
181
  
182
  /**
183
   * Method to set user group
184
   *
185
   * @param myGroup  the user group
186
   */
187
  public void setGroup(String [] myGroup)
188
  {
189
    this.group = myGroup;
190
  }
191
  /**
192
   * Method to indicate this query is a percentage search
193
   */
194
  public boolean isPercentageSearch()
195
  {
196
    return percentageSearch;
197
  }
198
  /*
199
   * Method to get owner query. If it is owner it has all permission
200
   */
201
  private String createOwerQuery()
202
  {
203
    String ownerQuery = null;
204
    ownerQuery = "SELECT docid FROM xml_documents WHERE ";
205
    if (userName != null && !userName.equals(""))
211

  
212
    /**
213
     * Method to set user group
214
     * 
215
     * @param myGroup
216
     *            the user group
217
     */
218
    public void setGroup(String[] myGroup)
206 219
    {
207
      ownerQuery = ownerQuery + "lower(user_owner) ='"+ userName +"'";
220
        this.group = myGroup;
208 221
    }
209
    
210
    MetaCatUtil.debugMessage("OwnerQuery: "+ownerQuery, 30);
211
    return ownerQuery;
212
  }
213
  
214
  /*
215
   * Method to create query for xml_access, this part is to get docid list which
216
   * have a allow rule for a given user
217
   */
218
  private String createAllowRuleQuery()
219
  {
220
    String allowQuery = null;
221
    String allowString = constructAllowString();
222
    allowQuery ="SELECT docid from xml_access WHERE( "+allowString;
223
    allowQuery = allowQuery +") AND subtreeid IS NULL";
224
    MetaCatUtil.debugMessage("allow query is: "+ allowQuery, 30);
225
    return allowQuery;
226
    
227
  
228
  }
229
  
230
  /* Method to construct a allow rule string */
231
  private String constructAllowString()
232
  {
233
    String allowQuery ="";
234
     // add allow rule for user name
235
     if (userName != null && !userName.equals(""))
222

  
223
    /**
224
     * Method to indicate this query is a percentage search
225
     */
226
    public boolean isPercentageSearch()
236 227
    {
237
      allowQuery = allowQuery +"(lower(principal_name) = '" + userName 
238
                              +"' AND perm_type = 'allow'"
239
                              +" AND (permission='4' OR permission='7'))";
228
        return percentageSearch;
240 229
    }
241
    // add allow rule for public
242
    allowQuery = allowQuery +"OR (lower(principal_name) = '" + PUBLIC 
243
                              +"' AND perm_type = 'allow'"
244
                              +" AND (permission='4' OR permission='7'))";
245
    
246
    // add allow rule for group
247
    if (group != null)
230

  
231
    /*
232
     * Method to get owner query. If it is owner it has all permission
233
     */
234
    private String createOwerQuery()
248 235
    {
249
      for (int i = 0; i< group.length; i++)
250
      {
251
        String groupUint = group[i];
252
        if (groupUint != null && !groupUint.equals(""))
253
        {
254
          groupUint = groupUint.toLowerCase();
255
          allowQuery = allowQuery +" OR (lower(principal_name) = '" + groupUint 
256
                              +"' AND perm_type = 'allow'"
257
                              +" AND (permission='4' OR permission='7'))";
258
        }//if
259
      }//for
260
    }//if
261
    MetaCatUtil.debugMessage("allow string is: "+ allowQuery, 40);
262
    return allowQuery;
263
  }
236
        String ownerQuery = null;
237
        ownerQuery = "SELECT docid FROM xml_documents WHERE ";
238
        if (userName != null && !userName.equals("")) {
239
            ownerQuery = ownerQuery + "lower(user_owner) ='" + userName + "'";
240
        }
264 241

  
265
   /*
266
   * Method to create query for xml_access, this part is to get docid list which
267
   * have a deny rule and perm_order is allowFirst for a given user. This means
268
   * the user will be denied to read
269
   */
270
  private String createDenyRuleQuery()
271
  {
272
    String denyQuery = null;
273
    String denyString = constructDenyString();
274
    denyQuery ="SELECT docid from xml_access WHERE( " + denyString;
275
    denyQuery = denyQuery + ") AND subtreeid IS NULL ";
276
    MetaCatUtil.debugMessage("denyquery is: "+ denyQuery, 30);
277
    return denyQuery;
278
  
279
  }
280
  /* Construct deny string */
281
  private String constructDenyString()
282
  {
283
    String denyQuery ="";
284
    // add deny rule for user name
285
    if (userName != null && !userName.equals(""))
242
        MetaCatUtil.debugMessage("OwnerQuery: " + ownerQuery, 30);
243
        return ownerQuery;
244
    }
245

  
246
    /*
247
     * Method to create query for xml_access, this part is to get docid list
248
     * which have a allow rule for a given user
249
     */
250
    private String createAllowRuleQuery()
286 251
    {
287
      denyQuery = denyQuery +"(lower(principal_name) = '" + userName 
288
                              +"' AND perm_type = 'deny' "
289
                              +"AND perm_order ='allowFirst'"
290
                              +" AND (permission='4' OR permission='7'))";
252
        String allowQuery = null;
253
        String allowString = constructAllowString();
254
        allowQuery = "SELECT docid from xml_access WHERE( " + allowString;
255
        allowQuery = allowQuery + ") AND subtreeid IS NULL";
256
        MetaCatUtil.debugMessage("allow query is: " + allowQuery, 30);
257
        return allowQuery;
258

  
291 259
    }
292
    // add deny rule for public
293
    denyQuery = denyQuery +"OR (lower(principal_name) = '" + PUBLIC 
294
                               +"' AND perm_type = 'deny' "
295
                               +"AND perm_order ='allowFirst'"
296
                               +" AND (permission='4' OR permission='7'))";
297
    
298
    // add allow rule for group
299
    if (group != null)
260

  
261
    /* Method to construct a allow rule string */
262
    private String constructAllowString()
300 263
    {
301
      for (int i = 0; i< group.length; i++)
302
      {
303
        String groupUint = group[i];
304
        if (groupUint != null && !groupUint.equals(""))
305
        {
306
          groupUint = groupUint.toLowerCase();
307
          denyQuery = denyQuery +" OR (lower(principal_name) = '" + groupUint 
308
                                +"' AND perm_type = 'deny' "
309
                                +"AND perm_order ='allowFirst'"
310
                                +" AND (permission='4' OR permission='7'))";
264
        String allowQuery = "";
265
        // add allow rule for user name
266
        if (userName != null && !userName.equals("")) {
267
            allowQuery = allowQuery + "(lower(principal_name) = '" + userName
268
                    + "' AND perm_type = 'allow'"
269
                    + " AND (permission='4' OR permission='7'))";
270
        }
271
        // add allow rule for public
272
        allowQuery = allowQuery + "OR (lower(principal_name) = '" + PUBLIC
273
                + "' AND perm_type = 'allow'"
274
                + " AND (permission='4' OR permission='7'))";
275

  
276
        // add allow rule for group
277
        if (group != null) {
278
            for (int i = 0; i < group.length; i++) {
279
                String groupUint = group[i];
280
                if (groupUint != null && !groupUint.equals("")) {
281
                    groupUint = groupUint.toLowerCase();
282
                    allowQuery = allowQuery + " OR (lower(principal_name) = '"
283
                            + groupUint + "' AND perm_type = 'allow'"
284
                            + " AND (permission='4' OR permission='7'))";
285
                }//if
286
            }//for
311 287
        }//if
312
      }//for
313
    }//if
314
    return denyQuery;
315
  }
316
  
317
  /**
318
   * Method to append a access control query to SQL. So in DBQuery class, we can
319
   * get docid from both user specified query and access control query. We don't
320
   * need to checking permission after we get the doclist. It will be good to 
321
   * performance
322
   *
323
   */
324
  public String getAccessQuery()
325
  {
326
    String accessQuery = null;
327
    String onwer = createOwerQuery();
328
    String allow = createAllowRuleQuery();
329
    String deny = createDenyRuleQuery();
330
    accessQuery = " AND (docid IN("+ onwer + ")";
331
    accessQuery = accessQuery + " OR (docid IN (" + allow + ")" 
332
                 + " AND docid NOT IN ("+ deny + ")))";
333
    MetaCatUtil.debugMessage("accessquery is: "+ accessQuery, 30);
334
    return accessQuery;
335
  }
336
  
337
  /** Main routine for testing */
338
  static public void main(String[] args) {
288
        MetaCatUtil.debugMessage("allow string is: " + allowQuery, 40);
289
        return allowQuery;
290
    }
339 291

  
340
     if (args.length < 1) {
341
       System.err.println("Wrong number of arguments!!!");
342
       System.err.println("USAGE: java QuerySpecification <xmlfile>");
343
       return;
344
     } else {
345
       int i = 0;
346
       boolean useXMLIndex = true;
347
       if ( args[i].equals( "-noindex" ) ) {
348
         useXMLIndex = false;
349
         i++;
350
       }
351
       String xmlfile  = args[i];
292
    /*
293
     * Method to create query for xml_access, this part is to get docid list
294
     * which have a deny rule and perm_order is allowFirst for a given user.
295
     * This means the user will be denied to read
296
     */
297
    private String createDenyRuleQuery()
298
    {
299
        String denyQuery = null;
300
        String denyString = constructDenyString();
301
        denyQuery = "SELECT docid from xml_access WHERE( " + denyString;
302
        denyQuery = denyQuery + ") AND subtreeid IS NULL ";
303
        MetaCatUtil.debugMessage("denyquery is: " + denyQuery, 30);
304
        return denyQuery;
352 305

  
353
       try {
354
         MetaCatUtil util = new MetaCatUtil();
355
         FileReader xml = new FileReader(new File(xmlfile));
356
         QuerySpecification qspec = 
357
                 new QuerySpecification(xml, util.getOption("saxparser"),
358
                                        util.getOption("accNumberSeparator"));
359
         System.out.println(qspec.printSQL(useXMLIndex));
306
    }
360 307

  
361
       } catch (IOException e) {
362
         System.err.println(e.getMessage());
363
       }
364
         
365
     }
366
  }
367
  
368
  /**
369
   * Returns true if the parsed query contains and extended xml query 
370
   * (i.e. there is at least one &lt;returnfield&gt; in the pathquery document)
371
   */
372
  public boolean containsExtendedSQL()
373
  {
374
    if(containsExtendedSQL)
308
    /* Construct deny string */
309
    private String constructDenyString()
375 310
    {
376
      return true;
311
        String denyQuery = "";
312
        // add deny rule for user name
313
        if (userName != null && !userName.equals("")) {
314
            denyQuery = denyQuery + "(lower(principal_name) = '" + userName
315
                    + "' AND perm_type = 'deny' "
316
                    + "AND perm_order ='allowFirst'"
317
                    + " AND (permission='4' OR permission='7'))";
318
        }
319
        // add deny rule for public
320
        denyQuery = denyQuery + "OR (lower(principal_name) = '" + PUBLIC
321
                + "' AND perm_type = 'deny' " + "AND perm_order ='allowFirst'"
322
                + " AND (permission='4' OR permission='7'))";
323

  
324
        // add allow rule for group
325
        if (group != null) {
326
            for (int i = 0; i < group.length; i++) {
327
                String groupUint = group[i];
328
                if (groupUint != null && !groupUint.equals("")) {
329
                    groupUint = groupUint.toLowerCase();
330
                    denyQuery = denyQuery + " OR (lower(principal_name) = '"
331
                            + groupUint + "' AND perm_type = 'deny' "
332
                            + "AND perm_order ='allowFirst'"
333
                            + " AND (permission='4' OR permission='7'))";
334
                }//if
335
            }//for
336
        }//if
337
        return denyQuery;
377 338
    }
378
    else
339

  
340
    /**
341
     * Method to append a access control query to SQL. So in DBQuery class, we
342
     * can get docid from both user specified query and access control query.
343
     * We don't need to checking permission after we get the doclist. It will
344
     * be good to performance
345
     *  
346
     */
347
    public String getAccessQuery()
379 348
    {
380
      return false;
349
        String accessQuery = null;
350
        String onwer = createOwerQuery();
351
        String allow = createAllowRuleQuery();
352
        String deny = createDenyRuleQuery();
353
        accessQuery = " AND (docid IN(" + onwer + ")";
354
        accessQuery = accessQuery + " OR (docid IN (" + allow + ")"
355
                + " AND docid NOT IN (" + deny + ")))";
356
        MetaCatUtil.debugMessage("accessquery is: " + accessQuery, 30);
357
        return accessQuery;
381 358
    }
382
  }
383
  
384
  /**
385
   * A method to get if the query has an attribute return field
386
   */
387
  public boolean containAttributeReturnField()
388
  {
389
    return hasAttributeReturnField;
390
  }
391
  
392
  /**
393
   * Accessor method to return the identifier of this Query
394
   */
395
  public String getIdentifier()
396
  {
397
    return meta_file_id;
398
  }
399 359

  
400
  /**
401
   * method to set the identifier of this query
402
   */
403
  public void setIdentifier(String id) {
404
    this.meta_file_id = id;
405
  }
360
    /** Main routine for testing */
361
    static public void main(String[] args)
362
    {
406 363

  
407
  /**
408
   * Accessor method to return the title of this Query
409
   */
410
  public String getQueryTitle()
411
  {
412
    return queryTitle;
413
  }
364
        if (args.length < 1) {
365
            System.err.println("Wrong number of arguments!!!");
366
            System.err.println("USAGE: java QuerySpecification <xmlfile>");
367
            return;
368
        } else {
369
            int i = 0;
370
            boolean useXMLIndex = true;
371
            if (args[i].equals("-noindex")) {
372
                useXMLIndex = false;
373
                i++;
374
            }
375
            String xmlfile = args[i];
414 376

  
415
  /**
416
   * method to set the title of this query
417
   */
418
  public void setQueryTitle(String title)
419
  {
420
    this.queryTitle = title;
421
  }
377
            try {
378
                MetaCatUtil util = new MetaCatUtil();
379
                FileReader xml = new FileReader(new File(xmlfile));
380
                QuerySpecification qspec = new QuerySpecification(xml, util
381
                        .getOption("saxparser"), util
382
                        .getOption("accNumberSeparator"));
383
                System.out.println(qspec.printSQL(useXMLIndex));
422 384

  
423
  /**
424
   * Accessor method to return a vector of the return document types as
425
   * defined in the &lt;returndoctype&gt; tag in the pathquery dtd.
426
   */
427
  public Vector getReturnDocList()
428
  {
429
    return this.returnDocList;
430
  }
385
            } catch (IOException e) {
386
                System.err.println(e.getMessage());
387
            }
431 388

  
432
  /**
433
   * method to set the list of return docs of this query
434
   */
435
  public void setReturnDocList(Vector returnDocList)
436
  {
437
    this.returnDocList = returnDocList;
438
  }
389
        }
390
    }
439 391

  
440
  /**
441
   * Accessor method to return a vector of the filter doc types as
442
   * defined in the &lt;filterdoctype&gt; tag in the pathquery dtd.
443
   */
444
  public Vector getFilterDocList()
445
  {
446
    return this.filterDocList;
447
  }
392
    /**
393
     * Returns true if the parsed query contains and extended xml query (i.e.
394
     * there is at least one &lt;returnfield&gt; in the pathquery document)
395
     */
396
    public boolean containsExtendedSQL()
397
    {
398
        if (containsExtendedSQL) {
399
            return true;
400
        } else {
401
            return false;
402
        }
403
    }
448 404

  
449
  /**
450
   * method to set the list of filter docs of this query
451
   */
452
  public void setFilterDocList(Vector filterDocList)
453
  {
454
    this.filterDocList = filterDocList;
455
  }
405
    /**
406
     * A method to get if the query has an attribute return field
407
     */
408
    public boolean containAttributeReturnField()
409
    {
410
        return hasAttributeReturnField;
411
    }
456 412

  
457
  /**
458
   * Accessor method to return a vector of the extended return fields as
459
   * defined in the &lt;returnfield&gt; tag in the pathquery dtd.
460
   */
461
  public Vector getReturnFieldList()
462
  {
463
    return this.returnFieldList; 
464
  }
413
    /**
414
     * Accessor method to return the identifier of this Query
415
     */
416
    public String getIdentifier()
417
    {
418
        return meta_file_id;
419
    }
465 420

  
466
  /**
467
   * method to set the list of fields to be returned by this query
468
   */
469
  public void setReturnFieldList(Vector returnFieldList)
470
  {
471
    this.returnFieldList = returnFieldList;
472
  }
421
    /**
422
     * method to set the identifier of this query
423
     */
424
    public void setIdentifier(String id)
425
    {
426
        this.meta_file_id = id;
427
    }
473 428

  
474
  /**
475
   * Accessor method to return a vector of the owner fields as
476
   * defined in the &lt;owner&gt; tag in the pathquery dtd.
477
   */
478
  public Vector getOwnerList()
479
  {
480
    return this.ownerList;
481
  }
429
    /**
430
     * Accessor method to return the title of this Query
431
     */
432
    public String getQueryTitle()
433
    {
434
        return queryTitle;
435
    }
482 436

  
483
  /**
484
   * method to set the list of owners used to constrain this query
485
   */
486
  public void setOwnerList(Vector ownerList)
487
  {
488
    this.ownerList = ownerList;
489
  }
437
    /**
438
     * method to set the title of this query
439
     */
440
    public void setQueryTitle(String title)
441
    {
442
        this.queryTitle = title;
443
    }
490 444

  
491
  /**
492
   * Accessor method to return a vector of the site fields as
493
   * defined in the &lt;site&gt; tag in the pathquery dtd.
494
   */
495
  public Vector getSiteList()
496
  {
497
    return this.siteList;
498
  }
445
    /**
446
     * Accessor method to return a vector of the return document types as
447
     * defined in the &lt;returndoctype&gt; tag in the pathquery dtd.
448
     */
449
    public Vector getReturnDocList()
450
    {
451
        return this.returnDocList;
452
    }
499 453

  
500
  /**
501
   * method to set the list of sites used to constrain this query
502
   */
503
  public void setSiteList(Vector siteList)
504
  {
505
    this.siteList = siteList;
506
  }
454
    /**
455
     * method to set the list of return docs of this query
456
     */
457
    public void setReturnDocList(Vector returnDocList)
458
    {
459
        this.returnDocList = returnDocList;
460
    }
507 461

  
508
  /**
509
   * get the QueryGroup used to express query constraints
510
   */
511
  public QueryGroup getQueryGroup()
512
  {
513
    return query;
514
  }
515
  
516
  /**
517
   * set the querygroup
518
   */
519
  public void setQueryGroup(QueryGroup group)
520
  {
521
    query = group;
522
  }
523
  
524
  /**
525
   * set if this query sepcification has extendQuery(has return doc type or not)
526
   */
527
  public void setContainsExtenedSQL(boolean hasExtenedQuery)
528
  {
529
     containsExtendedSQL = hasExtenedQuery;
530
  }  
531
   
532
  /**
533
   * Set up the SAX parser for reading the XML serialized query
534
   */
535
  private XMLReader initializeParser() {
536
    XMLReader parser = null;
462
    /**
463
     * Accessor method to return a vector of the filter doc types as defined in
464
     * the &lt;filterdoctype&gt; tag in the pathquery dtd.
465
     */
466
    public Vector getFilterDocList()
467
    {
468
        return this.filterDocList;
469
    }
537 470

  
538
    // Set up the SAX document handlers for parsing
539
    try {
471
    /**
472
     * method to set the list of filter docs of this query
473
     */
474
    public void setFilterDocList(Vector filterDocList)
475
    {
476
        this.filterDocList = filterDocList;
477
    }
540 478

  
541
      // Get an instance of the parser
542
      parser = XMLReaderFactory.createXMLReader(parserName);
479
    /**
480
     * Accessor method to return a vector of the extended return fields as
481
     * defined in the &lt;returnfield&gt; tag in the pathquery dtd.
482
     */
483
    public Vector getReturnFieldList()
484
    {
485
        return this.returnFieldList;
486
    }
543 487

  
544
      // Set the ContentHandler to this instance
545
      parser.setContentHandler(this);
488
    /**
489
     * method to set the list of fields to be returned by this query
490
     */
491
    public void setReturnFieldList(Vector returnFieldList)
492
    {
493
        this.returnFieldList = returnFieldList;
494
    }
546 495

  
547
      // Set the error Handler to this instance
548
      parser.setErrorHandler(this);
496
    /**
497
     * Accessor method to return a vector of the owner fields as defined in the
498
     * &lt;owner&gt; tag in the pathquery dtd.
499
     */
500
    public Vector getOwnerList()
501
    {
502
        return this.ownerList;
503
    }
549 504

  
550
    } catch (Exception e) {
551
       System.err.println("Error in QuerySpcecification.initializeParser " + 
552
                           e.toString());
505
    /**
506
     * method to set the list of owners used to constrain this query
507
     */
508
    public void setOwnerList(Vector ownerList)
509
    {
510
        this.ownerList = ownerList;
553 511
    }
554 512

  
555
    return parser;
556
  }
513
    /**
514
     * Accessor method to return a vector of the site fields as defined in the
515
     * &lt;site&gt; tag in the pathquery dtd.
516
     */
517
    public Vector getSiteList()
518
    {
519
        return this.siteList;
520
    }
557 521

  
558
  /**
559
   * callback method used by the SAX Parser when the start tag of an 
560
   * element is detected. Used in this context to parse and store
561
   * the query information in class variables.
562
   */
563
  public void startElement (String uri, String localName, 
564
                            String qName, Attributes atts) 
565
         throws SAXException {
566
    BasicNode currentNode = new BasicNode(localName);
567
    // add attributes to BasicNode here
568
    if (atts != null) {
569
      int len = atts.getLength();
570
      for (int i = 0; i < len; i++) {
571
        currentNode.setAttribute(atts.getLocalName(i), atts.getValue(i));
572
      }
522
    /**
523
     * method to set the list of sites used to constrain this query
524
     */
525
    public void setSiteList(Vector siteList)
526
    {
527
        this.siteList = siteList;
573 528
    }
574 529

  
575
    elementStack.push(currentNode); 
576
    if (currentNode.getTagName().equals("querygroup")) {
577
      QueryGroup currentGroup = new QueryGroup(
578
                                currentNode.getAttribute("operator"));
579
      if (query == null) {
580
        query = currentGroup;
581
      } else {
582
        QueryGroup parentGroup = (QueryGroup)queryStack.peek();
583
        parentGroup.addChild(currentGroup);
584
      }
585
      queryStack.push(currentGroup);
530
    /**
531
     * get the QueryGroup used to express query constraints
532
     */
533
    public QueryGroup getQueryGroup()
534
    {
535
        return query;
586 536
    }
587
  }
588 537

  
589
  /**
590
   * callback method used by the SAX Parser when the end tag of an 
591
   * element is detected. Used in this context to parse and store
592
   * the query information in class variables.
593
   */
594
  public void endElement (String uri, String localName,
595
                          String qName) throws SAXException {
596
    BasicNode leaving = (BasicNode)elementStack.pop(); 
597
    if (leaving.getTagName().equals("queryterm")) {
598
      boolean isCaseSensitive = (new Boolean(
599
              leaving.getAttribute("casesensitive"))).booleanValue();
600
      QueryTerm currentTerm = null;
601
      if (currentPathexpr == null) {
602
        currentTerm = new QueryTerm(isCaseSensitive,
603
                      leaving.getAttribute("searchmode"),currentValue);
604
      } else {
605
        currentTerm = new QueryTerm(isCaseSensitive,
606
                      leaving.getAttribute("searchmode"),currentValue,
607
                      currentPathexpr);
608
      }
609
      QueryGroup currentGroup = (QueryGroup)queryStack.peek();
610
      currentGroup.addChild(currentTerm);
611
      currentValue = null;
612
      currentPathexpr = null;
613
    } else if (leaving.getTagName().equals("querygroup")) {
614
      QueryGroup leavingGroup = (QueryGroup)queryStack.pop();
538
    /**
539
     * set the querygroup
540
     */
541
    public void setQueryGroup(QueryGroup group)
542
    {
543
        query = group;
615 544
    }
616
  }
617 545

  
618
  /**
619
   * callback method used by the SAX Parser when the text sequences of an 
620
   * xml stream are detected. Used in this context to parse and store
621
   * the query information in class variables.
622
   */
623
  public void characters(char ch[], int start, int length) {
546
    /**
547
     * set if this query sepcification has extendQuery(has return doc type or
548
     * not)
549
     */
550
    public void setContainsExtenedSQL(boolean hasExtenedQuery)
551
    {
552
        containsExtendedSQL = hasExtenedQuery;
553
    }
624 554

  
625
    String inputString = new String(ch, start, length);
626
    BasicNode currentNode = (BasicNode)elementStack.peek(); 
627
    String currentTag = currentNode.getTagName();
628
    if (currentTag.equals("meta_file_id")) {
629
      meta_file_id = inputString;
630
    } else if (currentTag.equals("querytitle")) {
631
      queryTitle = inputString;
632
    } else if (currentTag.equals("value")) {
633
      currentValue = inputString;
634
    } else if (currentTag.equals("pathexpr")) {
635
      currentPathexpr = inputString;
636
    } else if (currentTag.equals("returndoctype")) {
637
      returnDocList.add(inputString);
638
    } else if (currentTag.equals("filterdoctype")) {
639
      filterDocList.add(inputString);
640
    } else if (currentTag.equals("returnfield")) {
641
       handleReturnField(inputString);
642
    } else if (currentTag.equals("filterdoctype")) {
643
      filterDocList.add(inputString);
644
    } else if (currentTag.equals("owner")) {
645
      ownerList.add(inputString);
646
    } else if (currentTag.equals("site")) {
647
      siteList.add(inputString);
555
    /**
556
     * Set up the SAX parser for reading the XML serialized query
557
     */
558
    private XMLReader initializeParser()
559
    {
560
        XMLReader parser = null;
561

  
562
        // Set up the SAX document handlers for parsing
563
        try {
564

  
565
            // Get an instance of the parser
566
            parser = XMLReaderFactory.createXMLReader(parserName);
567

  
568
            // Set the ContentHandler to this instance
569
            parser.setContentHandler(this);
570

  
571
            // Set the error Handler to this instance
572
            parser.setErrorHandler(this);
573

  
574
        } catch (Exception e) {
575
            System.err.println("Error in QuerySpcecification.initializeParser "
576
                    + e.toString());
577
        }
578

  
579
        return parser;
648 580
    }
649
  }
650
  
651
  /**
652
   * Method to transfer string to return field
653
   */
654
  public void handleReturnField(String inputString)
655
  {
656
     // make sure if return fields has an attribute or not
657
      if (inputString.indexOf(ATTRIBUTESYMBOL) ==-1)
658
      {
659
        // no attribute value will be returned
660
        returnFieldList.add(inputString);
661
        containsExtendedSQL = true;
662
      }
663
      else
664
      {
665
        // has a attribute return field
666
        // divied the return filed into two parts, one is path and the
667
        // other is attribue name
668
        String returnPath = newPathExpressionWithOutAttribute(inputString);
669
        String attributeName = getAttributeName(inputString);
670
        Vector pathInfo = new Vector();
671
        // the vector has the information about return path and attributename
672
        pathInfo.addElement(returnPath);
673
        pathInfo.addElement(attributeName);
674
        // put the vector into a hash table. The reseaon why don't put
675
        // return path or attributename as a key is because they are not unique
676
        attributeReturnList.put
677
                            (new Integer(countAttributeReturnField), pathInfo);
678
        countAttributeReturnField++;
679
        hasAttributeReturnField = true;
680
        containsExtendedSQL = true;
681
        
682
      }
683
  }
684
  /**
685
   * create a SQL serialization of the query that this instance represents
686
   */
687
  public String printSQL(boolean useXMLIndex) {
688
    
689
   
690
    StringBuffer self = new StringBuffer();
691 581

  
692
    self.append("SELECT docid,docname,doctype,");
693
    self.append("date_created, date_updated, rev ");
694
    self.append("FROM xml_documents WHERE docid IN (");
582
    /**
583
     * callback method used by the SAX Parser when the start tag of an element
584
     * is detected. Used in this context to parse and store the query
585
     * information in class variables.
586
     */
587
    public void startElement(String uri, String localName, String qName,
588
            Attributes atts) throws SAXException
589
    {
590
        BasicNode currentNode = new BasicNode(localName);
591
        // add attributes to BasicNode here
592
        if (atts != null) {
593
            int len = atts.getLength();
594
            for (int i = 0; i < len; i++) {
595
                currentNode
596
                        .setAttribute(atts.getLocalName(i), atts.getValue(i));
597
            }
598
        }
695 599

  
696
    // This determines the documents that meet the query conditions
697
    self.append(query.printSQL(useXMLIndex));
600
        elementStack.push(currentNode);
601
        if (currentNode.getTagName().equals("querygroup")) {
602
            QueryGroup currentGroup = new QueryGroup(currentNode
603
                    .getAttribute("operator"));
604
            if (query == null) {
605
                query = currentGroup;
606
            } else {
607
                QueryGroup parentGroup = (QueryGroup) queryStack.peek();
608
                parentGroup.addChild(currentGroup);
609
            }
610
            queryStack.push(currentGroup);
611
        }
612
    }
698 613

  
699
    self.append(") ");
700
 
701
    // Add SQL to filter for doctypes requested in the query
702
    // This is an implicit OR for the list of doctypes. Only doctypes in this
703
    // list will be searched if the tag is present
704
    if (!filterDocList.isEmpty()) {
705
      boolean firstdoctype = true;
706
      self.append(" AND ("); 
707
      Enumeration en = filterDocList.elements();
708
      while (en.hasMoreElements()) {
709
        String currentDoctype = (String)en.nextElement();
710
        if (firstdoctype) {
711
           firstdoctype = false;
712
           self.append(" doctype = '" + currentDoctype + "'"); 
713
        } else {
714
          self.append(" OR doctype = '" + currentDoctype + "'"); 
614
    /**
615
     * callback method used by the SAX Parser when the end tag of an element is
616
     * detected. Used in this context to parse and store the query information
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