Metacat

For MNs that haven't set the archived flag to false on create(), set it here. Also, ensure that the CN sync code sets the authoritative and origin member node fields.

On MN.create(), set the archived flag to be false. This field isn't required in the schema, but is needed by the DataONE indexer once objects are sync'd.

-generate system meta for all docids, even those not originating on the server (replicas from the past)
-generate ORE docs and download remote data only for those documents that originated on this server being upgraded.
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5522

refactor generate system meta loop to the factory class -- to be reused in sysmeta and ORE generation
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5522

When managing obsoletes/obsoletedBy system metadata fields, set the archived flag to false initially, and set it to true on system metadata for objects that a revision obsoletes.

do NOT generate ORE maps or download data when we do the initial System Metadata generation -- this is deferred until D1 registration.

make more generic so that a custom list of IDs can be passed in.

check that the resourceMap (based on Id only) does not currently exist in the local metacat when generating OREs

insert OR update system metadata -- no need to do an update right after initial insert...

call the System Metadata generator during upgrade to 2.0.0