Metacat

remove ID mapping when a create()/"insert" call fails so that subsequent calls do not return an IdentifierNotUnique error. In this case it was due to invalid XML.
https://redmine.dataone.org/issues/2341

use RC-3 DataONE jars and fix compilation error that arose. https://redmine.dataone.org/issues/2351

overload getAllDocidsByType() method for backward semtools compatibility

do not subset the list for MS generation testing -- at least not as the default in svn!

CNodeService.listChecksumAlgorithms() was returning null rather than the list. Fixed.

ObjectFormatCache.getFormat(String formatStr) has been deprecated, and now only takes a formatId instance to get a format from the cache. It also throws Service Failure and NotImplemented, so here just set the format to application/octet-stream in any case.

Update D1NodeService to reflect new ObjectFormatCache signature.

only run ORE generation for EML docs -- no need to run this for all documents (yikes!)

use IdMan method to find docids that do not already have system metadata records -- this lets us re-run without re computing system metadata for every entry (in case the process is interrupted). I haven' been using this option because I wanted to continually regenerate all SM for everything in my test DBs, but we are so close to release that I want to get this in there.

for testing: limit and randomize the docs to generate metadata for