Metacat

Fixed compile error that an ioexception should be caught.

Reviewed code for all uses of FileInputStream, checking to see if the method should be closing the stream, and if so, closing it in the method as well as in the finally clause to ensure we don't leak file descriptors.

Refer to metacat.war deployments since those are now the default. https://projects.ecoinformatics.org/ecoinfo/issues/6082

test that d1 node admin is allowed all permissions. https://projects.ecoinformatics.org/ecoinfo/issues/6086

test for configured target url template on metadata using the default #view url. https://projects.ecoinformatics.org/ecoinfo/issues/6092

implement ORE check method to actually query the MN for OREs that reference the given pid.
https://projects.ecoinformatics.org/ecoinfo/issues/6061

check both previous and current data revisions when updating packages. https://projects.ecoinformatics.org/ecoinfo/issues/5647

default to non-https when testing localhost. If the developer has a hostname configured with https, it will correctly use this configured baseUrl, otherwise it will just use http://localhost.

do not use a URL that could resolve when testing the Metacat inaccessible exception.

use shared metacatContextDir variable for calls to Harvester.loadProperties(metacatContextDir);