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metacat @ 8718

Name Size Revision Age Author Comment
  bin 4810 almost 16 years daigle moved file from metacat/bin to metacat/src/scri...
  docs 8706 almost 11 years Lauren Walker Added an explanation of "metacat context" to th...
  lib 8716 over 10 years ben leinfelder refactor web service calls to bioportal and orc...
  metacat-common 8688 almost 11 years ben leinfelder bump the poms to 2.4.2
  metacat-index 8708 almost 11 years ben leinfelder include characteristic_sm field with SPARQL query
  src 8718 over 10 years ben leinfelder attribute the datapackage to the creator (using...
  test 8717 over 10 years ben leinfelder add test for BioPortal annotator service.
LICENSE 17.7 KB 666 almost 24 years Matt Jones Modified the license and copyright terms for ma...
README 35.4 KB 8682 almost 11 years ben leinfelder merge from branch: more notes on 2.4.1 release ...
build.properties 2.79 KB 8656 almost 11 years ben leinfelder update to use 2.4.1 so the trunk has all artifa...
build.sh 1.03 KB 670 almost 24 years Matt Jones Updated build files with minor documentation ch...
build.xml 63.8 KB 8656 almost 11 years ben leinfelder update to use 2.4.1 so the trunk has all artifa...
pom.xml 10.3 KB 8688 almost 11 years ben leinfelder bump the poms to 2.4.2
workflowscheduler.build.xml 16.3 KB 6053 over 13 years ben leinfelder remove very old "metacat webservice" code - as ...
  • svn:ignore: build
  • svn:mergeinfo: /branches/D1_0_6_2_BRANCH:6107-6121

Latest revisions

# Date Author Comment
8718 03/31/2014 11:11 AM ben leinfelder

attribute the datapackage to the creator (using orcid if we can find it). https://projects.ecoinformatics.org/ecoinfo/issues/6267
https://projects.ecoinformatics.org/ecoinfo/issues/6423
8717 03/31/2014 10:31 AM ben leinfelder

add test for BioPortal annotator service.
8716 03/28/2014 03:51 PM ben leinfelder

refactor web service calls to bioportal and orcid outside of the annotator class. test with orcid sandbox server. include orcid uri for the annotations being generated (we can index these and drive our searches on these values down the road). related to this: https://projects.ecoinformatics.org/ecoinfo/issues/6423 and also some semtools tasks.
8715 03/27/2014 04:54 PM ben leinfelder

remove leading '?' in the query parameter for MN.query() implementation. We want it to match CN behavior/expectations and comply with the DataONE specification for the interface. https://projects.ecoinformatics.org/ecoinfo/issues/6488
8714 03/26/2014 04:05 PM ben leinfelder

Use OBOE-SBC ontology for looking up concepts (it contains subclasses of our OBOE Characteristic and Standard superclasses). Restrict annotations to only subclasses that fit the OBOE model. Correct the xpointer and individual naming conventions so they are unique, but express the exact entity/attribute being annotated.
8713 03/26/2014 03:10 PM ben leinfelder

remove my api key. oops
8712 03/26/2014 03:02 PM ben leinfelder

add comment/pointer to BioPortal annotation service.
8711 03/26/2014 03:00 PM ben leinfelder

Include method to look up annotation classes from BioPortal. We still have OBOE-SBC in there, and theyhave the SWEET ontology. The suggestions returned are not perfect, but they can be better than nothing. Ideally, we'd only query a few ontologies so we don't end up using terms from medical ontologies that aren't really appropriate for our domain. https://projects.ecoinformatics.org/ecoinfo/issues/6256
8710 03/24/2014 04:17 PM ben leinfelder

Add xpointer FragmentSelectors to each annotation.
Split attribute label into tokens to attempt matching to OBOE concepts.
8709 03/23/2014 12:11 AM ben leinfelder

include code to generate random annotations for UI testing. Effective, but can be confusing to see so many unrelated concepts on duplicate EML packages.

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