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Revision 8839

Added by Lauren Walker almost 10 years ago

Add PROV relationships to the Solr schema. Populate the fields using the RdfXmlSubprocessor

View differences:

metacat-index/src/main/java/edu/ucsb/nceas/metacat/index/annotation/RdfXmlSubprocessor.java
20 20 
import java.io.IOException;
21 21 
import java.io.InputStream;
22 22 
import java.net.MalformedURLException;
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import java.net.URI;
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import java.net.URISyntaxException;
23 25 
import java.util.ArrayList;
24 26 
import java.util.Arrays;
25 27 
import java.util.Date;
......
129 131 
    	// read the annotation
130 132 
		InputStream source = toInputStream(rdfXmlDocument);
131 133 
    	String name = indexDocument.getIdentifier();
134
135 
    	//Check if the identifier is a valid URI and if not, make it one by prepending "http://"
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    	URI nameURI = new URI(name);
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    	String scheme = nameURI.getScheme();
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    	if((scheme == null) || (scheme.isEmpty())){
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    		name = "http://" + name;
140 
    	}
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132 142 
    	boolean loaded = dataset.containsNamedModel(name);
133 143 
		if (!loaded) {
134 144 
			OntModel ontModel = ModelFactory.createOntologyModel();
metacat-index/src/main/resources/application-context-oa.xml
12 12 
				<ref bean="annotation.characteristic" />
13 13 
				<ref bean="annotation.creator" />
14 14 
				<ref bean="prov.wasDerivedFrom" />
15
15 
				<ref bean="prov.wasGeneratedBy" />
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				<ref bean="prov.wasInformedBy" />
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				<ref bean="prov.used" />
16 18 
			</list>
17 19 
		</property>
18 20 
	</bean>
19 21
20 
	<bean id="prov.wasDerivedFrom" class="edu.ucsb.nceas.metacat.index.annotation.SparqlField">
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		<constructor-arg name="name" value="wasDerivedFrom" />
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		<constructor-arg name="query">
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			<value>
24 
				<![CDATA[
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				PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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				PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
27 
				PREFIX owl: <http://www.w3.org/2002/07/owl#>
28 
				PREFIX j.0: <http://www.w3.org/ns/prov#>
29 
				PREFIX ore: <http://www.openarchives.org/ore/terms/>
30 
				PREFIX dcterms: <http://purl.org/dc/terms/>
31 

  		




  32
  
  
    
				SELECT ?pid ?wasDerivedFrom


  		




  33
  
  
    
				FROM <$GRAPH_NAME>


  		




  34
  
  
    
				WHERE { 


  		




  35
  
  
    
						


  		




  36
  
  
    
					?derived_data		j.0:wasDerivedFrom	?primary_data .


  		




  37
  
  
    
					?derived_data		dcterms:identifier 	?pid . 


  		




  38
  
  
    
					?primary_data		dcterms:identifier 	?wasDerivedFrom .


  		




  39
  
  
    
						


  		




  40
  
  
    
				 	} 


  		




  41
  
  
    
				 ]]>


  		




  42
  
  
    
			</value>


  		




  43
  
  
    
		</constructor-arg>


  		




  44
  
  
    
	</bean>


  		




  45
  
  
    
	


  		




  46
  22
  
    
	<bean id="annotation.standard" class="edu.ucsb.nceas.metacat.index.annotation.SparqlField">


  		




  47
  23
  
    
		<constructor-arg name="name" value="standard_sm" />


  		




  48
  24
  
    
		<constructor-arg name="query">


  		




  ......




  139
  115
  
    
		</constructor-arg>


  		




  140
  116
  
    
		<!--property name="multivalue" value="false" /-->


  		




  141
  117
  
    
	</bean>


  		




  
  118
  
    
	


  		




  
  119
  
    
	<bean id="prov.wasDerivedFrom" class="edu.ucsb.nceas.metacat.index.annotation.SparqlField">


  		




  
  120
  
    
		<constructor-arg name="name" value="wasDerivedFrom" />


  		




  
  121
  
    
		<constructor-arg name="query">


  		




  
  122
  
    
			<value>


  		




  
  123
  
    
				<![CDATA[


  		




  
  124
  
    
				PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 


  		




  
  125
  
    
				PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 


  		




  
  126
  
    
				PREFIX owl: <http://www.w3.org/2002/07/owl#> 


  		




  
  127
  
    
				PREFIX prov: <http://www.w3.org/ns/prov#> 


  		




  
  128
  
    
				PREFIX ore: <http://www.openarchives.org/ore/terms/> 


  		




  
  129
  
    
				PREFIX dcterms: <http://purl.org/dc/terms/>


  		




  142
  130
  
    

  		




  
  131
  
    
				SELECT (str(?pidValue) as ?pid) (str(?wasDerivedFromValue) as ?wasDerivedFrom)


  		




  
  132
  
    
				FROM <$GRAPH_NAME>


  		




  
  133
  
    
				WHERE { 


  		




  
  134
  
    
						


  		




  
  135
  
    
					?derived_data		prov:wasDerivedFrom	?primary_data .


  		




  
  136
  
    
					?derived_data		dcterms:identifier 	?pidValue . 


  		




  
  137
  
    
					?primary_data		dcterms:identifier 	?wasDerivedFromValue .


  		




  
  138
  
    
						


  		




  
  139
  
    
				 	} 


  		




  
  140
  
    
				 ]]>


  		




  
  141
  
    
			</value>


  		




  
  142
  
    
		</constructor-arg>


  		




  
  143
  
    
	</bean>


  		




  
  144
  
    
	


  		




  
  145
  
    
	<bean id="prov.wasGeneratedBy" class="edu.ucsb.nceas.metacat.index.annotation.SparqlField">


  		




  
  146
  
    
		<constructor-arg name="name" value="wasGeneratedBy" />


  		




  
  147
  
    
		<constructor-arg name="query">


  		




  
  148
  
    
			<value>


  		




  
  149
  
    
				<![CDATA[


  		




  
  150
  
    
				PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 


  		




  
  151
  
    
				PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 


  		




  
  152
  
    
				PREFIX owl: <http://www.w3.org/2002/07/owl#> 


  		




  
  153
  
    
				PREFIX prov: <http://www.w3.org/ns/prov#> 


  		




  
  154
  
    
				PREFIX ore: <http://www.openarchives.org/ore/terms/> 


  		




  
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				PREFIX dcterms: <http://purl.org/dc/terms/>


  		




  
  156
  
    

  		




  
  157
  
    
				SELECT (str(?pidValue) as ?pid) (str(?wasGeneratedByValue) as ?wasGeneratedBy)


  		




  
  158
  
    
				FROM <$GRAPH_NAME>


  		




  
  159
  
    
				WHERE { 


  		




  
  160
  
    
						


  		




  
  161
  
    
					?result			prov:wasGeneratedBy	?activity .


  		




  
  162
  
    
					?result			dcterms:identifier	?pidValue . 


  		




  
  163
  
    
					?activity		dcterms:identifier	?wasGeneratedByValue .


  		




  
  164
  
    
						


  		




  
  165
  
    
				 	} 


  		




  
  166
  
    
				 ]]>


  		




  
  167
  
    
			</value>


  		




  
  168
  
    
		</constructor-arg>


  		




  
  169
  
    
	</bean>


  		




  
  170
  
    
	


  		




  
  171
  
    
	<bean id="prov.wasInformedBy" class="edu.ucsb.nceas.metacat.index.annotation.SparqlField">


  		




  
  172
  
    
		<constructor-arg name="name" value="wasInformedBy" />


  		




  
  173
  
    
		<constructor-arg name="query">


  		




  
  174
  
    
			<value>


  		




  
  175
  
    
				<![CDATA[


  		




  
  176
  
    
				PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 


  		




  
  177
  
    
				PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 


  		




  
  178
  
    
				PREFIX owl: <http://www.w3.org/2002/07/owl#> 


  		




  
  179
  
    
				PREFIX prov: <http://www.w3.org/ns/prov#> 


  		




  
  180
  
    
				PREFIX ore: <http://www.openarchives.org/ore/terms/> 


  		




  
  181
  
    
				PREFIX dcterms: <http://purl.org/dc/terms/>


  		




  
  182
  
    

  		




  
  183
  
    
				SELECT (str(?pidValue) as ?pid) (str(?wasInformedByValue) as ?wasInformedBy)


  		




  
  184
  
    
				FROM <$GRAPH_NAME>


  		




  
  185
  
    
				WHERE { 


  		




  
  186
  
    
						


  		




  
  187
  
    
					?activity				prov:wasInformedBy	?previousActivity .


  		




  
  188
  
    
					?activity				dcterms:identifier	?pidValue . 


  		




  
  189
  
    
					?previousActivity		dcterms:identifier	?wasInformedByValue .


  		




  
  190
  
    
						


  		




  
  191
  
    
				 	} 


  		




  
  192
  
    
				 ]]>


  		




  
  193
  
    
			</value>


  		




  
  194
  
    
		</constructor-arg>


  		




  
  195
  
    
	</bean>


  		




  
  196
  
    
	


  		




  
  197
  
    
	<bean id="prov.used" class="edu.ucsb.nceas.metacat.index.annotation.SparqlField">


  		




  
  198
  
    
		<constructor-arg name="name" value="used" />


  		




  
  199
  
    
		<constructor-arg name="query">


  		




  
  200
  
    
			<value>


  		




  
  201
  
    
				<![CDATA[


  		




  
  202
  
    
				PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 


  		




  
  203
  
    
				PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 


  		




  
  204
  
    
				PREFIX owl: <http://www.w3.org/2002/07/owl#> 


  		




  
  205
  
    
				PREFIX prov: <http://www.w3.org/ns/prov#> 


  		




  
  206
  
    
				PREFIX ore: <http://www.openarchives.org/ore/terms/> 


  		




  
  207
  
    
				PREFIX dcterms: <http://purl.org/dc/terms/>


  		




  
  208
  
    

  		




  
  209
  
    
				SELECT (str(?pidValue) as ?pid) (str(?usedValue) as ?used)


  		




  
  210
  
    
				FROM <$GRAPH_NAME>


  		




  
  211
  
    
				WHERE { 


  		




  
  212
  
    
						


  		




  
  213
  
    
					?activity		prov:used			?data .


  		




  
  214
  
    
					?activity		dcterms:identifier	?pidValue . 


  		




  
  215
  
    
					?data			dcterms:identifier	?usedValue .


  		




  
  216
  
    
						


  		




  
  217
  
    
				 	} 


  		




  
  218
  
    
				 ]]>


  		




  
  219
  
    
			</value>


  		




  
  220
  
    
		</constructor-arg>


  		




  
  221
  
    
	</bean>


  		




  
  222
  
    

  		




  143
  223
  
    
</beans>


  		












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