Metacat

                   // create the system metadata. During the creatation, the data file in the eml may need to be reindexed.

                   boolean reindexDataObject = true;

                   sysMeta = SystemMetadataFactory.createSystemMetadata(reindexDataObject, newdocid, true, false);

import edu.ucsb.nceas.metacat.index.MetacatSolrIndex;

	 * Create a system metadata object for insertion into metacat

	 * @param localId

	 * @param includeORE

	 * @param downloadData

	 * @return

	 * @throws McdbException

	 * @throws McdbDocNotFoundException

	 * @throws SQLException

	 * @throws IOException

	 * @throws AccessionNumberException

	 * @throws ClassNotFoundException

	 * @throws InsufficientKarmaException

	 * @throws ParseLSIDException

	 * @throws PropertyNotFoundException

	 * @throws BaseException

	 * @throws NoSuchAlgorithmException

	 * @throws JiBXException

	 * @throws AccessControlException

	 * @throws HandlerException

	 * @throws SAXException

	 * @throws AccessException

	 */

	public static SystemMetadata createSystemMetadata(String localId, boolean includeORE, boolean downloadData)

            throws McdbException, McdbDocNotFoundException, SQLException,

            IOException, AccessionNumberException, ClassNotFoundException,

            InsufficientKarmaException, ParseLSIDException,

            PropertyNotFoundException, BaseException, NoSuchAlgorithmException,

            JiBXException, AccessControlException, HandlerException, SAXException, AccessException {

	        boolean indexDataFile = false;

	        return createSystemMetadata(indexDataFile, localId, includeORE, downloadData);

	}

	/**

	 * @param indexDataFile

	 *            Indicate if we need to index data file.

	public static SystemMetadata createSystemMetadata(boolean indexDataFile, String localId, boolean includeORE, boolean downloadData)

							// reindex data file if need it.

							logMetacat.debug("do we need to reindex guid "+dataGuid.getValue()+"~~~~~~~~~~~~~~~~~~~~~~~~~~~~~?"+indexDataFile);

							if(indexDataFile) {

							    reindexDataFile(dataSysMeta.getIdentifier(), dataSysMeta);

							}

	/*

	 * Re-index the data file since the access rule was changed during the inserting of the eml document.

	 * (During first time to index the data file in Metacat API, the eml hasn't been inserted)

	 */

	private static void reindexDataFile(Identifier id, SystemMetadata sysmeta) {

	    try {

	        logMetacat.debug("@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ reindex"+id.getValue());

	        //set the archive to true to remove index.

	        sysmeta.setArchived(true);

            MetacatSolrIndex.getInstance().submit(id, sysmeta, null, true);

            //re-insert the index

            sysmeta.setArchived(false);

            MetacatSolrIndex.getInstance().submit(id, sysmeta, null, true);

        } catch (Exception e) {

            // TODO Auto-generated catch block

            logMetacat.warn("Can't reindex the data object "+id.getValue()+" since "+e.getMessage());

            //e.printStackTrace();

        }

	}