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From 10/21/2014 to 11/19/2014

11/20/2014

06:27 PM Feature #6627: Index geohash values to support MetacatUI 1.6.0
I tested both default and knb theme. It worked. Jing Tao
06:20 PM Bug #6626 (Closed): A public readable document can't be read if the document were insert by DataONE api (morpho trunk)
Still can't reproduce the bug. close it. Jing Tao
05:48 PM Task #6433 (Closed): Test Metacat on tomcat7
Document what need to be done in order to make morpho access metacat. Jing Tao
05:01 PM Bug #6596 (Closed): Data files were not indexed.
After the access rules were changed, the solr index will be called again. Jing Tao
04:59 PM Revision 8986 (metacat): Fixed a bug that the solr index of data files doesn't reflect the change of access control.
Jing Tao
04:02 PM Bug #6622 (Closed): MN.delete and CN.delete doesn't work
Jing Tao
04:02 PM Bug #6622: MN.delete and CN.delete doesn't work
I tested it and it worked. Jing Tao

11/19/2014

03:57 PM Feature #6627 (Closed): Index geohash values to support MetacatUI 1.6.0
Seem fine. ben leinfelder
12:58 PM Feature #6627 (In Progress): Index geohash values to support MetacatUI 1.6.0
Merged geohash fields from trunk to metacat 2.4 branch and pointed the build to metacat UI 1.6.0.
Note that the 2....
ben leinfelder
11:15 AM Feature #6627 (Closed): Index geohash values to support MetacatUI 1.6.0
ben leinfelder
03:56 PM Bug #6623 (Closed): Metacat compilation should target Java 1.6
I built metacat.war, index-war on java 7. Then i ran it on java 6. it works fine. Jing Tao
03:53 PM Bug #6621 (Closed): Replication of metadata objects should not change the content
tested it and it worked. Jing Tao
03:52 PM Bug #6624 (Closed): If an object was deleted, the deleted message should be shown in the NotFound exception
Tested and it worked. Jing Tao
03:52 PM Task #6625 (Closed): Update Hazelcast version to 2.6.9 for Dataone cci-1.5.0 release
updated to the new version and didn't see any issue so far. Jing Tao
03:51 PM Bug #6620 (Closed): MN.create, MN.update and CN.create metadata objects without altering content
tested it and it worked. Jing Tao
12:55 PM Revision 8984 (metacat): include schema.xml md5 checksum for 2.4.2 release.
ben leinfelder
12:52 PM Revision 8983 (metacat): [merge from 2.4 branch] use solr schema upgrader for 2.4.2 release -- need to replace the solr schema to include geohash fields
ben leinfelder
12:20 PM Revision 8979 (metacat): add 2.4.2 upgrade scripts so they are available in the 2.5.0 release as well
ben leinfelder
12:18 PM Revision 8978 (metacat): update documentation for trunk to use 2.5.0 release number
ben leinfelder
12:17 PM Revision 8977 (metacat): remove AnnotatorService completely - was moved to cn-index-processor
ben leinfelder
10:47 AM Bug #6626: A public readable document can't be read if the document were insert by DataONE api (morpho trunk)
Today, Skye and i tested on mn-sandbox-ucsb-1.test.dataone.org. It worked. We didn't change anything. It is weird. I ... Jing Tao
04:10 PM Bug #6626: A public readable document can't be read if the document were insert by DataONE api (morpho trunk)
I can't reproduce the bug on my local metacat which was built from the 2.4 branch as well. Jing Tao
10:29 AM Revision 8974 (metacat): add annotation, orcid and orgin_combined fields to the index schema
ben leinfelder
05:17 PM Bug #6596: Data files were not indexed.
The data file was indexed indeed. However, it can't be readable by a public user (actually it should be readable by a... Jing Tao

11/18/2014

02:39 PM Revision 8973 (metacat): use sparql field and triple store from cn-index_processor (refactor). include annotatorSubprocessor for testing in metacat-index
ben leinfelder
11:25 AM Bug #6626 (Closed): A public readable document can't be read if the document were insert by DataONE api (morpho trunk)
I used morpho trunk (using DataONE api) to insert a pubic readable eml document to mn-sandbox-ucsb-1 (which is instal... Jing Tao
09:29 PM Revision 8972 (metacat): let metacat-index lookup annotations for indexing rather than the metacat "reindex" action.
ben leinfelder
04:30 PM Revision 8971 (metacat): Add delete log for data objects on CNs.
Jing Tao

11/15/2014

05:03 PM Task #6625 (Closed): Update Hazelcast version to 2.6.9 for Dataone cci-1.5.0 release
Please see the bug: https://redmine.dataone.org/issues/6011 :
After the upgrade to Java7, I began seeing the fol...
Jing Tao

11/14/2014

12:03 PM Revision 8965 (metacat): remove dev-testing in favor of maven.dataone.org repo
ben leinfelder
11:20 AM Revision 8964 (metacat): only index non-empty comment text
ben leinfelder
11:13 AM Revision 8963 (metacat): index both tags and text from annotateit.org
ben leinfelder
05:59 PM Revision 8961 (metacat): query by consumerKey until the pid search facets are fully supported on annotateit.org
ben leinfelder
04:26 PM Bug #6624 (Closed): If an object was deleted, the deleted message should be shown in the NotFound exception
https://redmine.dataone.org/issues/3660 Jing Tao
04:25 PM Bug #6623 (Closed): Metacat compilation should target Java 1.6
see :https://redmine.dataone.org/issues/6529 Jing Tao
04:23 PM Bug #6622 (Closed): MN.delete and CN.delete doesn't work
see https://redmine.dataone.org/issues/6476 Jing Tao
04:21 PM Bug #6621 (Closed): Replication of metadata objects should not change the content
During the replication of metadata object, Metacat changed the InputStream object to String base on the encoding dec... Jing Tao
04:19 PM Bug #6620 (Closed): MN.create, MN.update and CN.create metadata objects without altering content
MN.create, MN.update and CN.create changed the InputStream object to String base on the encoding declared in xml prol... Jing Tao

11/13/2014

03:27 PM Task #6433 (In Progress): Test Metacat on tomcat7
We need to document the change:
in /var/lib/tomcat7/conf/context.xml, we need an attribute - useHttpOnly and set i...
Jing Tao
03:24 PM Bug #6613 (Closed): Clicking a link on SAEON skin will log out the logged-in users
We use ajax util method to fix the issue. Jing Tao
11:50 AM Bug #6619 (Closed): Add support for ORNL Mercury metadata schema to the Metacat schema catalog
We cache a number of schemas in Metacat, and need to add support for the Oak Ridge National Lab Mercury schema. Add ... Chris Jones

11/10/2014

02:34 PM Revision 8960 (metacat): add JkOptions directive and encoded slash options for dataone and solr query support in the URLs that metacat can get (they were in the -ssl version of this file already)
ben leinfelder
02:22 PM Revision 8959 (metacat): During the replication, the remote content will be saved without alteration.
Jing Tao

11/07/2014

02:42 PM Revision 8957 (metacat): Merge change from 2.4 branch to trunk (removed some duplicated links)
Jing Tao
11:23 AM Revision 8955 (metacat): Fixed issues for login and logout on Saeon skin:
https://projects.ecoinformatics.org/ecoinfo/issues/6613'
M saeon/SaeonLogin.jspx
Jing Tao

11/06/2014

08:20 AM Bug #6617 (Closed): XML response from action=getprincipals can contain reserved characters
Alvin pointed this out in KNB help email.
http://support.nceas.ucsb.edu/rt/Ticket/Display.html?id=10534...
ben leinfelder

11/05/2014

01:42 PM Revision 8953 (metacat): allow per-document reindexing to be initiated by any user (to support third-party annotations)
ben leinfelder

11/04/2014

04:15 PM Revision 8952 (metacat): Add junit test method for saving a metadata document with unmatched xml encoding declaration.
Jing Tao
04:14 PM Revision 8951 (metacat): Add a test file for unmatched xml encoding declaration.
Jing Tao

11/01/2014

05:36 PM Revision 8948 (metacat): Write the input stream into the file system without alteration in dataone create and update methods.
Jing Tao
05:09 PM Revision 8946 (metacat): look up annotations when reindexing a given pid. still very much a prototype in that we are looking up annotations from an external annotator-store. TODO: add pid filtering to query when annotateit.org supports it (pending upgrade on their site).
ben leinfelder

10/31/2014

04:07 PM Revision 8945 (metacat): add the code to install xmlstarlet.
Jing Tao
07:58 PM Revision 8944 (metacat): Find files of which type is link.
Jing Tao

10/30/2014

02:01 PM Revision 8943 (metacat): Change the urls of dataone and geotools repositories.
Jing Tao
09:03 AM Bug #6613 (Closed): Clicking a link on SAEON skin will log out the logged-in users
After a user logged in on SAEON skin, however, the page will show the login form again if the user clicks a site link... Jing Tao

10/29/2014

08:23 PM Revision 8942 (metacat): Keep /var/lib/postgresql/8.4/main directory.
Jing Tao

10/28/2014

04:11 PM Revision 8941 (metacat): Add the code to stop tomcat and apache.
Jing Tao
04:03 PM Revision 8940 (metacat): Add the "-y" option to force removing the old postgresql without prompting a y/n question.
Jing Tao
02:07 PM Revision 8939 (metacat): Restore the database for a gzipped sql file.
Jing Tao
01:35 PM Revision 8938 (metacat): Added the code to gzip the output file in the dumpall command. This will save disk space.
Jing Tao

10/24/2014

03:46 PM Revision 8937 (metacat): Modified the redirect rules which didn't work.
Jing Tao
02:50 PM Revision 8936 (metacat): Add the code to add the attribute useHttpOnly='false' to the Context element in the context.xml file.
Jing Tao
01:02 PM Revision 8935 (metacat): Fixed a bug the code can get the argument from the command line.
Jing Tao
12:47 PM Revision 8934 (metacat): Added the code to change the permission of the backup file so the postgres user can read it.
Jing Tao
12:24 PM Revision 8933 (metacat): Added the code to check if the metacat backup file exists.
Added the code "exist 0" at the end of the scripts. Jing Tao
12:08 PM Revision 8932 (metacat): Added the .conf to those site files since the new apache server only loads the sites with the extension.
Jing Tao
09:45 AM Revision 8931 (metacat): Add the code to vacuum the db.
Jing Tao

10/23/2014

04:32 PM Revision 8930 (metacat): Add the code to enable the 8009 port for ajp connection in the server.xml of tomcat7.
Jing Tao

10/22/2014

12:29 PM Revision 8929 (metacat): Added the code to modify the geo data directory in the metacat.properties file.
Jing Tao
11:43 AM Revision 8928 (metacat): Fixed some bugs to restore postgresql data.
Jing Tao
09:30 PM Revision 8927 (metacat): Add the code install some components for installing tomcat7
Jing Tao
09:13 PM Revision 8926 (metacat): Use a variable to replace the hard code.
Jing Tao
07:30 PM Revision 8925 (metacat): Use the version directly.
Jing Tao
07:28 PM Revision 8924 (metacat): Fixed a typo.
Jing Tao
07:26 PM Revision 8923 (metacat): put the date to an output file.
Jing Tao
06:56 PM Revision 8922 (metacat): A script for vacuum the db.
Jing Tao
06:32 PM Revision 8921 (metacat): Add a script to move the db from 8.3 to 9.1 base on a dumped file.
Jing Tao

10/21/2014

10:58 AM Revision 8920 (metacat): Use the pg_dumpall command to back up all information of the database.
Jing Tao
 

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