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1929
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brooke
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#
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# '$RCSfile$'
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# Copyright: 2000 Regents of the University of California
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#
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# '$Author$'
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# '$Date$'
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# '$Revision$'
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License
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# along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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#
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package Metacat;
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require 5.005_62;
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use strict;
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use warnings;
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require Exporter;
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use AutoLoader qw(AUTOLOAD);
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use LWP::UserAgent;
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3421
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walbridge
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use HTTP::Request::Common qw(POST);
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1929
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brooke
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use HTTP::Cookies;
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our @ISA = qw(Exporter);
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# Items to export into callers namespace by default. Note: do not export
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# names by default without a very good reason. Use EXPORT_OK instead.
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# Do not simply export all your public functions/methods/constants.
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# This allows declaration use Metacat ':all';
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# If you do not need this, moving things directly into @EXPORT or @EXPORT_OK
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# will save memory.
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our %EXPORT_TAGS = ( 'all' => [ qw(
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) ] );
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our @EXPORT_OK = ( @{ $EXPORT_TAGS{'all'} } );
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our @EXPORT = qw(
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);
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our $VERSION = '0.01';
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# Preloaded methods go here.
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#############################################################
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# Constructor creates a new class instance and inits all
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# of the instance variables to their proper default values,
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# which can later be changed using "set_options"
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#############################################################
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sub new {
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3421
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walbridge
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my($type,$metacatUrl) = @_;
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1929
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brooke
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my $cookie_jar = HTTP::Cookies->new;
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3421
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walbridge
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my $self = {
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metacatUrl => $metacatUrl,
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brooke
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message => '',
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cookies => \$cookie_jar
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};
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3421
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walbridge
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bless $self, $type;
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return $self;
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1929
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brooke
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}
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#############################################################
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# subroutine to set options for the class, including the URL
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# for the Metacat database to which we would connect
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#############################################################
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sub set_options {
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my $self = shift;
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my %newargs = ( @_ );
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my $arg;
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foreach $arg (keys %newargs) {
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$self->{$arg} = $newargs{$arg};
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}
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}
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#############################################################
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# subroutine to send data to metacat and get the response
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# return response from metacat
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#############################################################
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sub sendData {
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my $self = shift;
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my %postData = ( @_ );
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1955
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jones
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$self->{'message'} = '';
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brooke
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my $userAgent = new LWP::UserAgent;
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$userAgent->agent("MetacatClient/1.0");
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3421
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walbridge
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# determine encoding type
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my $contentType = 'application/x-www-form-urlencoded';
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if ($postData{'enctype'}) {
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$contentType = $postData{'enctype'};
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delete $postData{'enctype'};
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}
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9529
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cjones
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my $request;
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if ( $self->{'auth_token_header'} ) {
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# if available, set the Authorization header from the auth_token_header instance variable
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$request = POST("$self->{'metacatUrl'}",
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Content_Type => $contentType,
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Authorization => $self->{'auth_token_header'},
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Content => \%postData
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);
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} else {
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$request = POST("$self->{'metacatUrl'}",
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Content_Type => $contentType,
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Content => \%postData
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);
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}
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3421
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walbridge
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# set cookies on UA object
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brooke
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my $cookie_jar = $self->{'cookies'};
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$$cookie_jar->add_cookie_header($request);
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5029
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daigle
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#print "Content_type:text/html\n\n";
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walbridge
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#print "request: " . $request->as_string();
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1929
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brooke
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my $response = $userAgent->request($request);
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3421
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walbridge
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#print "response: " . $response->as_string();
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1929
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brooke
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if ($response->is_success) {
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# save the cookies
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$$cookie_jar->extract_cookies($response);
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# save the metacat response message
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$self->{'message'} = $response->content;
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} else {
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#print "SendData content is: ", $response->content, "\n";
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return 0;
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}
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return $response;
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}
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#############################################################
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# subroutine to log into Metacat and save the cookie if the
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2684
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sgarg
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# login is valid. If not valid, return 0. If valid then send
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# following values to indicate user status
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# 1 - user
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# 2 - moderator
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# 3 - administrator
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# 4 - moderator and administrator
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1929
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brooke
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#############################################################
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sub login {
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my $self = shift;
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my $username = shift;
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my $password = shift;
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my $returnval = 0;
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my %postData = ( action => 'login',
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qformat => 'xml',
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username => $username,
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password => $password
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);
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my $response = $self->sendData(%postData);
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if (($response) && $response->content =~ /<login>/) {
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$returnval = 1;
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}
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2684
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sgarg
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if (($response) && $response->content =~ /<isAdministrator>/) {
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if (($response) && $response->content =~ /<isModerator>/) {
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$returnval = 4;
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} else {
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$returnval = 3;
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}
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} elsif (($response) && $response->content =~ /<isModerator>/){
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$returnval = 2;
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}
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brooke
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return $returnval;
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}
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#############################################################
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9228
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leinfelder
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# subroutine to logout of Metacat
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#############################################################
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sub logout {
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my $self = shift;
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my %postData = (action => 'logout');
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my $response = $self->sendData(%postData);
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9234
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leinfelder
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my $returnval = 1;
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if (($response) && $response->content =~ /<logout>/) {
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$returnval = 0;
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}
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9228
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leinfelder
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# clear the cookie
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my $cookie_jar = $self->{'cookies'};
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$$cookie_jar->clear();
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9234
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leinfelder
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return $returnval;
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9228
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leinfelder
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}
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#############################################################
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5311
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daigle
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# subroutine to log into Metacat and get usr info xml for
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# a logged in user
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#############################################################
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sub getUserInfo {
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my $self = shift;
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my %postData = (action => 'getloggedinuserinfo');
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my $response = $self->sendData(%postData);
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return $response->content;
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}
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#############################################################
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1929
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brooke
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# subroutine to insert an XML document into Metacat
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# If success, return 1, else return 0
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#############################################################
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sub insert {
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my $self = shift;
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my $docid = shift;
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my $xmldocument = shift;
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my $dtd = shift;
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my $returnval = 0;
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my %postData = ( action => 'insert',
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docid => $docid,
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doctext => $xmldocument
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);
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if ($dtd) {
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$postData{'dtdtext'} = $dtd;
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}
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my $response = $self->sendData(%postData);
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if (($response) && $response->content =~ /<success>/) {
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$returnval = 1;
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} elsif (($response)) {
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$returnval = 0;
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#print "Error response from sendData!\n";
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#print $response->content, "\n";
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} else {
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$returnval = 0;
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#print "Invalid response from sendData!\n";
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}
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return $returnval;
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}
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#############################################################
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# subroutine to update an XML document in Metacat
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# If success, return 1, else return 0
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#############################################################
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sub update {
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my $self = shift;
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my $docid = shift;
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my $xmldocument = shift;
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my $dtd = shift;
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my $returnval = 0;
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my %postData = ( action => 'update',
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docid => $docid,
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doctext => $xmldocument
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);
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if ($dtd) {
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$postData{'dtdtext'} = $dtd;
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}
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my $response = $self->sendData(%postData);
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if (($response) && $response->content =~ /<success>/) {
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$returnval = 1;
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}
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return $returnval;
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}
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288 |
3421
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walbridge
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############################################################
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# subroutine to upload an XML document in Metacat
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# If success, return 1, else return 0
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291 |
1929
|
brooke
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#############################################################
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292 |
3421
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walbridge
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sub upload {
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my $self = shift;
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my $docid = shift;
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my $datafile = shift;
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7820
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leinfelder
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my $filename = shift;
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297 |
3421
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walbridge
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my $returnval = 0;
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my %postData = ( action => 'upload',
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docid => $docid,
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7821
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leinfelder
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datafile => [$datafile, $filename],
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9535
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cjones
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enctype => 'multipart/form-data'
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3421
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walbridge
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);
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my $response = $self->sendData(%postData);
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#print "response is: $response";
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#
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if (($response) && $response->content =~ /<success>/) {
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$returnval = $response->content;
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}
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return $returnval;
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}
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#############################################################
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318 |
1929
|
brooke
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# subroutine to delete an XML document in Metacat
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# If success, return 1, else return 0
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#############################################################
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sub delete {
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my $self = shift;
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my $docid = shift;
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my $returnval = 0;
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my %postData = ( action => 'delete',
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docid => $docid
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);
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my $response = $self->sendData(%postData);
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if (($response) && $response->content =~ /<success>/) {
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$returnval = 1;
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}
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return $returnval;
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}
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338 |
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339 |
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#############################################################
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340 |
2846
|
sgarg
|
# subroutine to set access for an XML document in Metacat
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341 |
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# If success, return 1, else return 0
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342 |
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#############################################################
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343 |
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sub setaccess {
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344 |
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my $self = shift;
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345 |
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my $docid = shift;
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my $principal = shift;
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347 |
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my $permission = shift;
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348 |
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my $permType = shift;
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my $permOrder = shift;
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my $returnval = 0;
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my %postData = ( action => 'setaccess',
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docid => $docid,
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principal => $principal,
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permission => $permission,
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permType => $permType,
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permOrder => $permOrder
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);
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my $response = $self->sendData(%postData);
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362 |
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if (($response) && $response->content =~ /<success>/) {
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$returnval = 1;
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364 |
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}
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365 |
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366 |
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return $returnval;
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367 |
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}
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368 |
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369 |
|
|
|
370 |
|
|
#############################################################
|
371 |
1929
|
brooke
|
# subroutine to read an XML document from Metacat
|
372 |
|
|
# returns the XML from Metacat, which may be an error response
|
373 |
|
|
#############################################################
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374 |
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|
sub read {
|
375 |
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my $self = shift;
|
376 |
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|
my $docid = shift;
|
377 |
|
|
|
378 |
|
|
my %postData = ( action => 'read',
|
379 |
|
|
qformat => 'xml',
|
380 |
|
|
docid => $docid
|
381 |
|
|
);
|
382 |
|
|
|
383 |
|
|
my $response = $self->sendData(%postData);
|
384 |
|
|
|
385 |
|
|
my $returnval = 0;
|
386 |
|
|
if ($response) {
|
387 |
|
|
$returnval = $response;
|
388 |
|
|
}
|
389 |
|
|
|
390 |
|
|
return $returnval;
|
391 |
|
|
}
|
392 |
|
|
|
393 |
|
|
#############################################################
|
394 |
|
|
# subroutine to query metacat using a structured path query
|
395 |
|
|
# returns the XML from Metacat, which may be an error response
|
396 |
|
|
#############################################################
|
397 |
|
|
sub squery {
|
398 |
|
|
my $self = shift;
|
399 |
|
|
my $query = shift;
|
400 |
|
|
|
401 |
|
|
my %postData = ( action => 'squery',
|
402 |
|
|
qformat => 'xml',
|
403 |
|
|
query => $query
|
404 |
|
|
);
|
405 |
|
|
|
406 |
|
|
my $response = $self->sendData(%postData);
|
407 |
|
|
|
408 |
|
|
my $returnval = 0;
|
409 |
|
|
if ($response) {
|
410 |
|
|
$returnval = $response;
|
411 |
|
|
}
|
412 |
|
|
|
413 |
|
|
return $returnval;
|
414 |
|
|
}
|
415 |
|
|
|
416 |
|
|
#############################################################
|
417 |
1953
|
jones
|
# subroutine to get the maximimum id in a series
|
418 |
|
|
# If success, return max id, else return 0
|
419 |
|
|
#############################################################
|
420 |
|
|
sub getLastId {
|
421 |
|
|
my $self = shift;
|
422 |
|
|
my $scope = shift;
|
423 |
|
|
|
424 |
|
|
my $returnval = 0;
|
425 |
|
|
|
426 |
|
|
my %postData = ( action => 'getlastdocid',
|
427 |
|
|
scope => $scope
|
428 |
|
|
);
|
429 |
|
|
|
430 |
|
|
my $response = $self->sendData(%postData);
|
431 |
5201
|
daigle
|
if (($response) && $response->content =~ /<docid>(.*)<\/docid>/s) {
|
432 |
1953
|
jones
|
$returnval = "$1";
|
433 |
|
|
} elsif (($response)) {
|
434 |
|
|
$returnval = 0;
|
435 |
|
|
#print "Error response from sendData!\n";
|
436 |
|
|
#print $response->content, "\n";
|
437 |
|
|
} else {
|
438 |
|
|
$returnval = 0;
|
439 |
|
|
#print "Invalid response from sendData!\n";
|
440 |
|
|
}
|
441 |
|
|
|
442 |
|
|
return $returnval;
|
443 |
|
|
}
|
444 |
5201
|
daigle
|
|
445 |
1953
|
jones
|
#############################################################
|
446 |
5201
|
daigle
|
# subroutine to get the maximimum id in a series
|
447 |
|
|
# If success, return max id, else return 0
|
448 |
|
|
#############################################################
|
449 |
|
|
sub getLastRevision {
|
450 |
|
|
my $self = shift;
|
451 |
|
|
my $docid = shift;
|
452 |
|
|
|
453 |
|
|
my $returnval = 0;
|
454 |
|
|
|
455 |
|
|
my %postData = ( action => 'getrevisionanddoctype',
|
456 |
|
|
docid => $docid
|
457 |
|
|
);
|
458 |
|
|
|
459 |
|
|
my $response = $self->sendData(%postData);
|
460 |
|
|
if (($response) && $response->content =~ /(.*);(.*)/s) {
|
461 |
|
|
$returnval = "$1";
|
462 |
|
|
} elsif (($response)) {
|
463 |
|
|
$returnval = 0;
|
464 |
|
|
#print "Error response from sendData!\n";
|
465 |
|
|
#print $response->content, "\n";
|
466 |
|
|
} else {
|
467 |
|
|
$returnval = 0;
|
468 |
|
|
#print "Invalid response from sendData!\n";
|
469 |
|
|
}
|
470 |
|
|
|
471 |
|
|
return $returnval;
|
472 |
|
|
}
|
473 |
|
|
|
474 |
|
|
#############################################################
|
475 |
7695
|
leinfelder
|
# subroutine to get the docid for a given PID
|
476 |
|
|
# If success, return docid, else return -1
|
477 |
|
|
#############################################################
|
478 |
|
|
sub getDocid {
|
479 |
|
|
my $self = shift;
|
480 |
|
|
my $pid = shift;
|
481 |
|
|
|
482 |
|
|
my $returnval = 0;
|
483 |
|
|
|
484 |
|
|
my %postData = ( action => 'getdocid',
|
485 |
|
|
pid => $pid
|
486 |
|
|
);
|
487 |
|
|
|
488 |
|
|
my $response = $self->sendData(%postData);
|
489 |
|
|
if (($response) && $response->content =~ /<docid>(.*)<\/docid>/s) {
|
490 |
|
|
$returnval = "$1";
|
491 |
|
|
} elsif (($response)) {
|
492 |
|
|
$returnval = -1;
|
493 |
|
|
#print "Error response from sendData!\n";
|
494 |
|
|
#print $response->content, "\n";
|
495 |
|
|
} else {
|
496 |
|
|
$returnval = -1;
|
497 |
|
|
#print "Invalid response from sendData!\n";
|
498 |
|
|
}
|
499 |
|
|
|
500 |
|
|
return $returnval;
|
501 |
|
|
}
|
502 |
|
|
|
503 |
|
|
#############################################################
|
504 |
1929
|
brooke
|
# subroutine to get the message returned from the last executed
|
505 |
|
|
# metacat action. These are generally XML formatted messages.
|
506 |
|
|
#############################################################
|
507 |
|
|
sub getMessage {
|
508 |
|
|
my $self = shift;
|
509 |
|
|
|
510 |
|
|
return $self->{'message'};
|
511 |
|
|
}
|
512 |
|
|
|
513 |
|
|
#############################################################
|
514 |
|
|
# subroutine to get the cookies returned from the metacat
|
515 |
|
|
# server to establish (and pass on) session info (JSESSIONID).
|
516 |
|
|
#############################################################
|
517 |
|
|
sub getCookies {
|
518 |
|
|
my $self = shift;
|
519 |
|
|
|
520 |
|
|
return $self->{'cookies'};
|
521 |
|
|
}
|
522 |
|
|
|
523 |
|
|
# Autoload methods go after =cut, and are processed by the autosplit program.
|
524 |
|
|
|
525 |
|
|
1;
|
526 |
|
|
__END__
|
527 |
|
|
# Below is stub documentation for your module. You better edit it!
|
528 |
|
|
|
529 |
|
|
=head1 NAME
|
530 |
|
|
|
531 |
|
|
Metacat - Perl extension for communicating with the Metacat XML database
|
532 |
|
|
|
533 |
|
|
=head1 SYNOPSIS
|
534 |
|
|
|
535 |
|
|
use Metacat;
|
536 |
|
|
my $metacat = Metacat->new();
|
537 |
|
|
my $response = $metacat->login($username, $password);
|
538 |
|
|
print $metacat->getMessage();
|
539 |
|
|
$response = $metacat->insert($docid, $xmldoc);
|
540 |
|
|
print $metacat->getMessage();
|
541 |
|
|
$response = $metacat->insert($docid, $xmldoc, $dtd);
|
542 |
|
|
print $metacat->getMessage();
|
543 |
|
|
$response = $metacat->update($docid, $xmldoc);
|
544 |
|
|
print $metacat->getMessage();
|
545 |
3724
|
jones
|
$response = $metacat->upload($docid, $data);
|
546 |
|
|
print $metacat->getMessage();
|
547 |
1929
|
brooke
|
$htmlResponse = $metacat->read($docid);
|
548 |
|
|
$xmldoc = $htmlResponse->content();
|
549 |
|
|
print $xmldoc;
|
550 |
|
|
$resultset = $metacat->squery($pathquery);
|
551 |
|
|
print $resultset;
|
552 |
|
|
$response = $metacat->delete($docid);
|
553 |
2846
|
sgarg
|
$response = $metacat->setaccess($docid,$principal,$permission,$permType,$permOrder);
|
554 |
1953
|
jones
|
my $lastid = $metacat->getLastId("obfs");
|
555 |
1929
|
brooke
|
print $metacat->getMessage();
|
556 |
|
|
$response = $metacat->getCookies();
|
557 |
|
|
print $metacat->getMessage();
|
558 |
|
|
|
559 |
|
|
=head1 DESCRIPTION
|
560 |
|
|
|
561 |
|
|
This is a client library for accessing the Metacat XML database. Metacat
|
562 |
|
|
is a Java servlet that accepts commands over HTTP and returns XML and
|
563 |
|
|
HTML responses. See http://knb.ecoinformatics.org for details about
|
564 |
|
|
Metacat and its interface.
|
565 |
|
|
|
566 |
|
|
=head2 EXPORT
|
567 |
|
|
|
568 |
|
|
None by default.
|
569 |
|
|
|
570 |
|
|
|
571 |
|
|
=head1 AUTHOR
|
572 |
|
|
|
573 |
|
|
Matthew B. Jones, jones@nceas.ucsb.edu
|
574 |
|
|
|
575 |
|
|
=head1 SEE ALSO
|
576 |
|
|
|
577 |
|
|
perl(1).
|
578 |
|
|
|
579 |
|
|
=cut
|