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From 02/21/2010 to 03/22/2010

03/18/2010

11:25 AM Bug #4890: findMatchingAnnotations(...) needs Context
Reopening but as a Morpho plugin bug.
Now that the annotation manager can search on context, we need to include it in...
ben leinfelder
11:22 AM Bug #4890: findMatchingAnnotations(...) needs Context
now you can provide a list of Triples (Entity, Relationship, Entity) as part of the search criteria. ben leinfelder

03/17/2010

04:51 PM Bug #4891: Rank annotation search results
[4:42pm] bowers: i'm not super big on using "or" and "and" in search
[4:42pm] bowers: i think it should all be "or" w...
ben leinfelder
04:51 PM Bug #4891 (Resolved): Rank annotation search results
"just like google" ben leinfelder
04:48 PM Bug #4889: Compound Search UI
Another recommendation: do away with AND/OR confusion and use the search results ranking to indicate how closely the ... ben leinfelder
04:25 PM Bug #4889: Compound Search UI
Include Context relationship searching. This needs to be added to the SMS AnnotationManager ben leinfelder
04:00 PM Bug #4889 (Resolved): Compound Search UI
Place-holding bug for work done on the search interface.
Initially there was a single screen for specifying Entity/C...
ben leinfelder
04:45 PM Bug #4890: findMatchingAnnotations(...) needs Context
[4:31pm] bowers: i think the madlib stuff could be reused for this ... although you might want a way to say that two ... ben leinfelder
04:28 PM Bug #4890 (Resolved): findMatchingAnnotations(...) needs Context
Likely the first of many enhancements to the AnnotationManager API.
We need to allow searching based on Context.
...
ben leinfelder
11:36 AM Bug #4882: Use OBOE Measurement class to auto-fill other fields
cutting installers for folks to check out this feature.
enter bugs as needed for tweaking
ben leinfelder

03/16/2010

03:50 PM Bug #4882: Use OBOE Measurement class to auto-fill other fields
I've added a method to the SMS OntologyManager that can be used to look up the restrictions that are defined on the M... ben leinfelder

03/15/2010

04:55 PM Bug #4882: Use OBOE Measurement class to auto-fill other fields
i've casually been calling this a "Measurement template" ben leinfelder
11:14 AM Bug #4882 (Resolved): Use OBOE Measurement class to auto-fill other fields
By defining subclasses of OBOE's Measurement class (of Characteristic, uses Protocol, etc...) we can just have one wi... ben leinfelder

03/11/2010

06:03 PM Bug #4878: Ontology Browser - popup closes when clicked anywhere (Win XP)
Now checking that the focus shift is from one field to another (rather than to a popup). This prevents the popup from... ben leinfelder
05:31 PM Bug #4878 (Resolved): Ontology Browser - popup closes when clicked anywhere (Win XP)
From the madlib (column) view:
-click a class selection field
-pop up shows
-try to expand the root node
-popup c...
ben leinfelder

03/04/2010

03:26 PM Bug #4856: Ontology Browser as a non-modal palette
IRC conversation:
----
bowers: what if instead of or in addition to drag and drop, it worked more palette like
[12:27...
ben leinfelder
10:39 AM Bug #4854: Integrate Context Annotation tab with Column Annotation tab
Started by making the CustomList have a madlib string representation of the context entry. The template is such:
"The...
ben leinfelder
10:00 AM Bug #4853: Save as Duplicate... should copy the Annotation too
Or should it?
It could also be an option since I can see wanting to get rid of the annotation (starting fresh) like i...
ben leinfelder

03/01/2010

02:36 PM Bug #4856: Ontology Browser as a non-modal palette
Use Proposals:
------------
1. Drag and Drop
-class can be selected from the tree and dragged to a:
-madlib field ...
ben leinfelder
09:42 AM Bug #4856 (New): Ontology Browser as a non-modal palette
From Shawn:
---
5. I still think we should display the current drop-down term
selection as a panel in the right-ha...
ben leinfelder
09:39 AM Bug #4855 (New): Reorder the Full Annotation rows to match madlib order
From Shawn:
---
2. The full annotation should be more closely aligned to the terms
used in the madlib. So, e.g., I...
ben leinfelder
09:37 AM Bug #4854 (New): Integrate Context Annotation tab with Column Annotation tab
Make one compete madlib for the column annotation.
---
1. I'd like to see the context annotation tab be folded int...
ben leinfelder
09:11 AM Bug #4853 (Resolved): Save as Duplicate... should copy the Annotation too
If you duplicate an EML package, the Annotation should be duplicated as well ben leinfelder

02/25/2010

01:32 PM Bug #4844 (Resolved): Dynamically resize Ontology selection fields
This used to work when I was using a label to render the ontology selection widget, but the text field does not resiz... ben leinfelder
12:03 PM Bug #4824: Ontology Browser - double click does not always select and close the popup
while working on this, I noticed that if you tab between windows (cmd+tab on Mac) you'd trigger the pop up to be show... ben leinfelder
11:34 AM Bug #4824: Ontology Browser - double click does not always select and close the popup
...because the tree is recreated during the search (typing in the text field), the double click listener was lost.
It...
ben leinfelder
11:13 AM Bug #4824: Ontology Browser - double click does not always select and close the popup
This seems to be happening when I type in the text field to initiate a search ben leinfelder
11:09 AM Bug #4819: "Column Annotation" view duplicates mappings
I should have been editing this bug instead of the bug about overwriting annotations. They were caused by the same is... ben leinfelder
10:51 AM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
-added logging
-use member variable for annotation page reference (used in event handling methods)
-reset the annotat...
ben leinfelder
09:57 AM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
and it's back ben leinfelder
09:42 AM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
this is working now. I've restricted how you can use the AnnotationPage's methods so as to avoid duplicating mappings... ben leinfelder

02/24/2010

03:16 PM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
here's my thinking:
-there should be a [rather lightweight] class that holds the tabbed pane
-this AnnotationTabPane ...
ben leinfelder
02:08 PM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
Alternatively, create StateChangeEvents that reflect the change regardless of where it happens, so that updates to th... Matt Jones
02:02 PM Bug #4836 (Resolved): Column Annotation page overwrites changes made in Full Annotation
Because of how I've set up the listener on the madlib tab, if you make a change directly to the annotation table, the... ben leinfelder
01:38 PM Bug #4833: Direct Annotation (table) is adding incomplete mappings
I introduced this bug when consolidation the code that looks up the current annotation and attribute. simple as omitt... ben leinfelder
01:27 PM Bug #4833 (Resolved): Direct Annotation (table) is adding incomplete mappings
When I double click a cell in the annotation table to select a class I end up completely hosing the annotation and th... ben leinfelder
01:16 PM Bug #4823: Save Annotations... menu option improvements
these are committed. 'course we have to figure out a better "whole package" save eventually. ben leinfelder
11:15 AM Bug #4822: Include "Annotation Context" tab for editing the contexts
done ben leinfelder
10:54 AM Bug #4822: Include "Annotation Context" tab for editing the contexts
Now using the Context tab to add/edit/remove the entries.
Now I just need to remove the Add/Remove Context... menu it...
ben leinfelder

02/23/2010

03:28 PM Bug #4822: Include "Annotation Context" tab for editing the contexts
the sizing issue has been dealt with. ben leinfelder
02:23 PM Bug #4822: Include "Annotation Context" tab for editing the contexts
added a new page that uses one of Morpho's CustomList widgets to make the modifications.
so far:
-the page is a third...
ben leinfelder
08:21 AM Bug #4822 (Resolved): Include "Annotation Context" tab for editing the contexts
Currently you can only add a new context relationship or remove an existing one. There is no dedicated UI for display... ben leinfelder
10:30 AM Bug #4825: Add Context is not saving the Relationship
now getting the class from the widget, whereas previously the whole class URI was in the text field ben leinfelder
09:51 AM Bug #4825 (Resolved): Add Context is not saving the Relationship
When you add a Context to the currently selected Observation, the context is saved in the XML, but the Relationship i... ben leinfelder
08:27 AM Bug #4824 (Resolved): Ontology Browser - double click does not always select and close the popup
I've intermittently found that double clicking the tree does not actually close the popup - instead it behaves like t... ben leinfelder
08:22 AM Bug #4823 (Resolved): Save Annotations... menu option improvements
1. There should be no ellipsis since there is not additional UI after invoking the option. (There should be when we s... ben leinfelder

02/22/2010

05:23 PM Bug #4821: Changes in madlib view do not immediately show in table view
When the tab is changed, a column selection event is fired which triggers the annotation to be saved as it currently ... ben leinfelder
05:01 PM Bug #4821 (Resolved): Changes in madlib view do not immediately show in table view
If you enter an annotation in the "Column Annotation" tab then switch to the "Full Annotation" view you will not see ... ben leinfelder
04:45 PM Bug #4819: "Column Annotation" view duplicates mappings
I encountered another case where the values from one annotation were populating and saving in another column's.
I cha...
ben leinfelder
03:27 PM Bug #4819: "Column Annotation" view duplicates mappings
Now "resetting" the madlib annotation tab so that the old values are not saved as a new mapping for the next selected... ben leinfelder
11:57 AM Bug #4819 (Resolved): "Column Annotation" view duplicates mappings
If you enter an Annotation using the Column Annotation madlib view, then switch to the table view and select another ... ben leinfelder
 

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