Timothy McPhillips's activity
From 10/21/2008 to 11/19/2008
11/13/2008
- 11:04 AM Kepler Bug #3671 (New): Configurable workspace directory for holding workflows, data, and run products
- In bug 3558 I requested that a new directory be created on the user's system for each workflow run, and that outputs ...
- 10:30 AM Kepler Bug #3546: Automatically load trace for a completed run into the provenance browser
- I suggest the provenance browser integrated with the Kepler GUI itself, possibly as a tabbed pane in the same space a...
- 10:20 AM Kepler Bug #3669 (Resolved): Tabbed pane interface for holding workflow canvas and additional GUI elements
- A number of new user interface elements are being developed for Kepler. Some of these require considerable screen re...
11/12/2008
- 07:38 PM Kepler Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
- We have a terminology issue here. The term 'Provenance Browser' has been applied to the graphical user interface con...
10/31/2008
- 04:11 PM Kepler Bug #3576: support for accessing cascading metadata from within CompositeCoactor
- I just committed an alternative version of CompositeCoactor that supports binding to cascading metadata (or annotatio...
10/30/2008
- 01:41 PM Kepler Bug #3586 (Resolved): COMAD traces should be reproducible when there is limited concurrency
- The ComadTest actor is roughly the COMAD equivalent of Ptolemy's NonStrictTest. It records the stream of data it rec...
- 11:47 AM Kepler Bug #3585 (New): Provide API for creating output files during a workflow run
- I suggested in bug 3558 that Kepler should create a directory on the user's system for each workflow run and store th...
10/27/2008
- 03:04 PM Kepler Bug #3576 (New): support for accessing cascading metadata from within CompositeCoactor
- The CompositeCoactor class extends TypedCompositeActor (and implements Coactor) to provide a mechanism for implementi...
- 11:49 AM Kepler Bug #3574 (New): Support for importing directory contents using CollectionSource
- A common workflow pattern is to take as input all of the files (or those of a particular type) in a directory on a re...
- 11:32 AM Kepler Bug #3573 (New): Support for importing file contents automatically using CollectionSource
- The CollectionComposer and CollectionReader actors extend CollectionSource to read XML representations of the input t...
10/24/2008
- 04:48 PM Kepler Bug #3568 (New): support for writing COMAD-style trace files from the Provenance Recorder
- I have heard rumors that there are plans to enable the general-purpose Provenance Recorder in Kepler to (optionally) ...
- 01:18 PM Kepler Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
- I am encountering this problem as well (on OSX). The scrollbars disappear when I go to full screen mode. They do not...
- 01:09 PM Kepler Bug #3552: Annotation elements in trace file do not appear in details pane of provenance browser
- Cool! It also would be nice somehow to distinguish annotations and metadata applied directly to the element in quest...
- 01:04 PM Kepler Bug #3566 (New): order collection contents displayed in provenance browser?
- When the data elements inside COMAD collections are displayed in the provenance browser they seem to be arbitrarily o...
10/23/2008
- 05:53 PM Kepler Bug #3560 (New): Color-code contents of CollectionDisplay
- The CollectionDisplay actor provides a live, XML-formatted view of the data stream arriving at the actor in a COMAD w...
- 05:38 PM Kepler Bug #3559 (New): month field in trace file name is off by one
- The name of a new run trace file comprises the name of the workflow, a timestamp, and a number distinguishing the tra...
- 04:46 PM Kepler Bug #2252: Need to add actors for aligning mulitiple DNA or protein sequences
- Actors for running ClustalW and Gblocks are included in the ppod-actors module.
- 04:33 PM Kepler Bug #3558 (New): Store each workflow run trace in it's own directory
- The ppod-gui module includes enhancements to the Kepler GUI for browsing and viewing the traces of previously run wor...
- 11:21 AM Kepler Bug #3557 (New): Provide data dependency graph view in provenance browser
- The provenance browser currently provides four views of a workflow run: the raw trace file, the "Collection History"...
10/22/2008
- 05:25 PM Kepler Bug #3555 (New): enhancements to Trace File view in provenance browser
- The provenance browser allows one to view the raw trace file (in XML format) of the run currently loaded in the brows...
- 01:29 PM Kepler Bug #3547: CollectionReader actor throws exception when input file contains Metadata or Parameter elements
- The problem was that AnnotationSet was trying to record invocation dependencies implied by the addition of annotation...
- 10:59 AM Kepler Bug #3547 (Resolved): CollectionReader actor throws exception when input file contains Metadata or Parameter elements
- The CollectionReader actor reads in an XML representation of the input to a COMAD workflow and translates the Collect...
- 01:07 PM Kepler Bug #3552 (In Progress): Annotation elements in trace file do not appear in details pane of provenance browser
- The provenance browser shows the details for the selected data or collection element of a trace in the lower left-han...
- 10:40 AM Kepler Bug #3546 (New): Automatically load trace for a completed run into the provenance browser
- At present, viewing the trace of a workflow run via the provenance browser (the one in the provenance-apps module) re...
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