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bug.log

Peter Slaughter, 11/22/2016 03:19 PM

 
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[ ... lines deleted ... ]
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metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
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PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX  oa:   <http://www.w3.org/ns/oa#>
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PREFIX  oboe-core: <http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#>
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PREFIX  owl:  <http://www.w3.org/2002/07/owl#>
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PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX  dcterms: <http://purl.org/dc/terms/>
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SELECT  ?standard_sm ?pid
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FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
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WHERE
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  { ?measurement rdf:type oboe-core:Measurement .
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    ?measurement rdf:type ?restriction .
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    ?restriction owl:onProperty oboe-core:usesStandard .
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    ?restriction owl:allValuesFrom ?standard .
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    ?standard (rdfs:subClassOf)+ ?standard_sm .
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    ?standard_sm rdfs:subClassOf oboe-core:Standard .
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    ?annotation oa:hasBody ?measurement .
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    ?annotation oa:hasTarget ?target .
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    ?target oa:hasSource ?metadata .
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    ?metadata dcterms:identifier ?pid
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  }
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 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
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metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [DEBUG]: Segment: 0 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [DEBUG]: Segment: 0 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 25621 => [25, 172032] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [DEBUG]: Segment: 25 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 63499 => [62, 90112] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [DEBUG]: Segment: 62 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
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PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX  oa:   <http://www.w3.org/ns/oa#>
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PREFIX  oboe-core: <http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#>
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PREFIX  owl:  <http://www.w3.org/2002/07/owl#>
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PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX  dcterms: <http://purl.org/dc/terms/>
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SELECT  ?characteristic_sm ?pid
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FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
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WHERE
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  { ?measurement rdf:type oboe-core:Measurement .
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    ?measurement rdf:type ?restriction .
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    ?restriction owl:onProperty oboe-core:ofCharacteristic .
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    ?restriction owl:allValuesFrom ?characteristic .
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    ?characteristic (rdfs:subClassOf)+ ?characteristic_sm .
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    ?characteristic_sm rdfs:subClassOf oboe-core:Characteristic .
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    ?annotation oa:hasBody ?measurement .
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    ?annotation oa:hasTarget ?target .
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    ?target oa:hasSource ?metadata .
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    ?metadata dcterms:identifier ?pid
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  }
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 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
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metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 63499 => [62, 90112] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
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PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX  prov: <http://www.w3.org/ns/prov#>
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PREFIX  oa:   <http://www.w3.org/ns/oa#>
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PREFIX  foaf: <http://xmlns.com/foaf/0.1/>
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PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX  dcterms: <http://purl.org/dc/terms/>
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SELECT  ?creator_sm ?pid
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FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
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WHERE
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  { ?metadata dcterms:identifier ?pid .
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    ?metadata prov:wasAttributedTo ?person .
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    ?person dcterms:identifier ?creator_sm
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  }
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 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
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metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 68610 => [67, 16384] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [DEBUG]: Segment: 0 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [DEBUG]: Segment: 22 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 1764353 => [1723, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [DEBUG]: Segment: 1723 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [DEBUG]: Segment: 60 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
161
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
163
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
164
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
166
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
167
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
169
PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
170
PREFIX  prov: <http://www.w3.org/ns/prov#>
171
PREFIX  owl:  <http://www.w3.org/2002/07/owl#>
172
PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
173
PREFIX  ore:  <http://www.openarchives.org/ore/terms/>
174
PREFIX  dcterms: <http://purl.org/dc/terms/>
175

    
176
SELECT  (str(?pidValue) AS ?pid) (str(?wasDerivedFromValue) AS ?wasDerivedFrom)
177
FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
178
WHERE
179
  { ?derived_data prov:wasDerivedFrom ?primary_data .
180
    ?derived_data dcterms:identifier ?pidValue .
181
    ?primary_data dcterms:identifier ?wasDerivedFromValue
182
  }
183
 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
184
metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
185
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
187
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 64527 => [63, 122880] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [DEBUG]: Segment: 63 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
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metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
201
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
202
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
203
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
204
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
205
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
206
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) ( ?wasDerivedFrom = "urn:uuid:ee635a61-c930-444d-8214-db65178a1a47" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
207
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
208
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
209
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
210
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
211
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
212
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
213
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
214
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
215
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
216
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
217
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
218
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
219
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:2c20432e-116a-4085-b8d6-abfc4b2dada2" ) ( ?wasDerivedFrom = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
220
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
221
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
222
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
223
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
224
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
225
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
226
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
227
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
228
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
229
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
230
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
231
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
232
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) ( ?wasDerivedFrom = "urn:uuid:23495598-d50b-4317-b0e1-05a9d9e52632" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
233
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
234
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
235
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
236
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
237
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
238
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
239
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
240
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
241
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
242
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
243
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
244
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
245
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) ( ?wasDerivedFrom = "urn:uuid:672ba6c5-8812-4c05-a324-246af172c67a" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
246
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
247
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
248
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
249
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
250
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
251
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
252
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
253
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
254
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
255
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
256
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
257
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
258
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) ( ?wasDerivedFrom = "urn:uuid:e534b2ab-3a1b-44ed-8a99-ce54a0487aea" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
259
metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
260
PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
261
PREFIX  prov: <http://www.w3.org/ns/prov#>
262
PREFIX  owl:  <http://www.w3.org/2002/07/owl#>
263
PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
264
PREFIX  ore:  <http://www.openarchives.org/ore/terms/>
265
PREFIX  dcterms: <http://purl.org/dc/terms/>
266

    
267
SELECT  (str(?pidValue) AS ?pid) (str(?wasGeneratedByValue) AS ?wasGeneratedBy)
268
FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
269
WHERE
270
  { ?result prov:wasGeneratedBy ?activity .
271
    ?result dcterms:identifier ?pidValue .
272
    ?activity dcterms:identifier ?wasGeneratedByValue
273
  }
274
 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
275
metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
276
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
277
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
278
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
279
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
280
metacat-index 20161122-10:20:15: [TRACE]: 64535 => [63, 188416] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
281
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
282
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
283
metacat-index 20161122-10:20:15: [TRACE]: 1764353 => [1723, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
284
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
285
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
286
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
287
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
288
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
289
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
290
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
291
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
292
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
293
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
294
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
295
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
296
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) ( ?wasGeneratedBy = "urn:uuid:d8e46217-2650-42b2-896f-0f006b1a2d3b" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
297
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
298
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
299
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
300
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
301
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
302
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
303
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
304
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
305
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
306
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
307
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
308
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
309
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:2c20432e-116a-4085-b8d6-abfc4b2dada2" ) ( ?wasGeneratedBy = "urn:uuid:9ceeaeb3-6ef3-4b1e-bc4d-96e299fab3a4" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
310
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
311
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
312
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
313
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
314
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
315
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
316
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
317
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
318
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
319
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
320
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
321
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
322
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:a0e104da-c925-4765-af60-29310de1b99a" ) ( ?wasGeneratedBy = "urn:uuid:9ceeaeb3-6ef3-4b1e-bc4d-96e299fab3a4" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
323
metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
324
PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
325
PREFIX  prov: <http://www.w3.org/ns/prov#>
326
PREFIX  owl:  <http://www.w3.org/2002/07/owl#>
327
PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
328
PREFIX  ore:  <http://www.openarchives.org/ore/terms/>
329
PREFIX  dcterms: <http://purl.org/dc/terms/>
330

    
331
SELECT  (str(?pidValue) AS ?pid) (str(?wasInformedByValue) AS ?wasInformedBy)
332
FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
333
WHERE
334
  { ?activity prov:wasInformedBy ?previousActivity .
335
    ?activity dcterms:identifier ?pidValue .
336
    ?previousActivity dcterms:identifier ?wasInformedByValue
337
  }
338
 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
339
metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
340
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
341
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
342
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
343
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
344
metacat-index 20161122-10:20:15: [TRACE]: 25605 => [25, 40960] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
345
metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
346
PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
347
PREFIX  prov: <http://www.w3.org/ns/prov#>
348
PREFIX  owl:  <http://www.w3.org/2002/07/owl#>
349
PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
350
PREFIX  ore:  <http://www.openarchives.org/ore/terms/>
351
PREFIX  dcterms: <http://purl.org/dc/terms/>
352

    
353
SELECT  (str(?pidValue) AS ?pid) (str(?usedValue) AS ?used)
354
FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
355
WHERE
356
  { ?activity prov:used ?data .
357
    ?activity dcterms:identifier ?pidValue .
358
    ?data dcterms:identifier ?usedValue
359
  }
360
 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
361
metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
362
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
363
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
364
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
365
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
366
metacat-index 20161122-10:20:15: [TRACE]: 68619 => [67, 90112] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
367
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
368
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
369
metacat-index 20161122-10:20:15: [TRACE]: 1764353 => [1723, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
370
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
371
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
372
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
373
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
374
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
375
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
376
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
377
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
378
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
379
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
380
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
381
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
382
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:d8e46217-2650-42b2-896f-0f006b1a2d3b" ) ( ?used = "urn:uuid:ee635a61-c930-444d-8214-db65178a1a47" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
383
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
384
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
385
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
386
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
387
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
388
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
389
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
390
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
391
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
392
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
393
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
394
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
395
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:9ceeaeb3-6ef3-4b1e-bc4d-96e299fab3a4" ) ( ?used = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
396
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
397
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
398
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
399
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
400
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
401
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
402
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
403
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
404
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
405
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
406
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
407
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
408
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:d8e46217-2650-42b2-896f-0f006b1a2d3b" ) ( ?used = "urn:uuid:23495598-d50b-4317-b0e1-05a9d9e52632" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
409
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
410
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
411
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
412
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
413
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
414
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
415
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
416
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
417
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
418
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
419
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
420
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
421
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:d8e46217-2650-42b2-896f-0f006b1a2d3b" ) ( ?used = "urn:uuid:672ba6c5-8812-4c05-a324-246af172c67a" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
422
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
423
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
424
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
425
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
426
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
427
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
428
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
429
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
430
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
431
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
432
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
433
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
434
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:d8e46217-2650-42b2-896f-0f006b1a2d3b" ) ( ?used = "urn:uuid:e534b2ab-3a1b-44ed-8a99-ce54a0487aea" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
435
metacat-index 20161122-10:20:15: [DEBUG]: <No txn>: Start flush delayed commits [TDB]
436
metacat-index 20161122-10:20:15: [DEBUG]: <No txn>: End flush delayed commits [TDB]
437
java.lang.NullPointerException
438
	at org.dataone.cn.indexer.annotation.RdfXmlSubprocessor.getSolrDocs(RdfXmlSubprocessor.java:278)
439
	at org.dataone.cn.indexer.annotation.RdfXmlSubprocessor.process(RdfXmlSubprocessor.java:265)
440
	at org.dataone.cn.indexer.annotation.RdfXmlSubprocessor.processDocument(RdfXmlSubprocessor.java:119)
441
	at edu.ucsb.nceas.metacat.index.SolrIndex.process(SolrIndex.java:235)
442
	at edu.ucsb.nceas.metacat.index.SolrIndex.insert(SolrIndex.java:386)
443
	at edu.ucsb.nceas.metacat.index.SolrIndex.update(SolrIndex.java:597)
444
	at edu.ucsb.nceas.metacat.index.SolrIndex.update(SolrIndex.java:552)
445
	at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryUpdated(SystemMetadataEventListener.java:146)
446
	at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryAdded(SystemMetadataEventListener.java:119)
447
	at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:148)
448
	at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:130)
449
	at com.hazelcast.client.impl.ListenerManager.customRun(ListenerManager.java:88)
450
	at com.hazelcast.client.ClientRunnable.run(ClientRunnable.java:30)
451
	at java.lang.Thread.run(Thread.java:745)
452
metacat-index 20161122-10:20:15: [ERROR]: null [edu.ucsb.nceas.metacat.index.SolrIndex]
453
java.lang.NullPointerException
454
	at org.dataone.cn.indexer.annotation.RdfXmlSubprocessor.getSolrDocs(RdfXmlSubprocessor.java:278)
455
	at org.dataone.cn.indexer.annotation.RdfXmlSubprocessor.process(RdfXmlSubprocessor.java:265)
456
	at org.dataone.cn.indexer.annotation.RdfXmlSubprocessor.processDocument(RdfXmlSubprocessor.java:119)
457
	at edu.ucsb.nceas.metacat.index.SolrIndex.process(SolrIndex.java:235)
458
	at edu.ucsb.nceas.metacat.index.SolrIndex.insert(SolrIndex.java:386)
459
	at edu.ucsb.nceas.metacat.index.SolrIndex.update(SolrIndex.java:597)
460
	at edu.ucsb.nceas.metacat.index.SolrIndex.update(SolrIndex.java:552)
461
	at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryUpdated(SystemMetadataEventListener.java:146)
462
	at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryAdded(SystemMetadataEventListener.java:119)
463
	at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:148)
464
	at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:130)
465
	at com.hazelcast.client.impl.ListenerManager.customRun(ListenerManager.java:88)
466
	at com.hazelcast.client.ClientRunnable.run(ClientRunnable.java:30)
467
	at java.lang.Thread.run(Thread.java:745)
468
metacat-index 20161122-10:20:15: [ERROR]: SolrIndex.update - could not update the solr index since null [edu.ucsb.nceas.metacat.index.SolrIndex]
469
org.apache.solr.client.solrj.SolrServerException
470
	at edu.ucsb.nceas.metacat.index.SolrIndex.process(SolrIndex.java:241)
471
	at edu.ucsb.nceas.metacat.index.SolrIndex.insert(SolrIndex.java:386)
472
	at edu.ucsb.nceas.metacat.index.SolrIndex.update(SolrIndex.java:597)
473
	at edu.ucsb.nceas.metacat.index.SolrIndex.update(SolrIndex.java:552)
474
	at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryUpdated(SystemMetadataEventListener.java:146)
475
	at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryAdded(SystemMetadataEventListener.java:119)
476
	at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:148)
477
	at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:130)
478
	at com.hazelcast.client.impl.ListenerManager.customRun(ListenerManager.java:88)
479
	at com.hazelcast.client.ClientRunnable.run(ClientRunnable.java:30)
480
	at java.lang.Thread.run(Thread.java:745)
481
metacat-index 20161122-10:20:15: [INFO]: [] webapp=null path=/select params={q=id%3A%22urn%3Auuid%3Ae029b6e4-be07-442b-a54e-2d0aca657294%22} hits=1 status=0 QTime=0  [org.apache.solr.core.SolrCore]
482
metacat-index 20161122-10:20:15: [DEBUG]: Adding field: create_count_i [edu.ucsb.nceas.metacat.index.SolrIndex]
483
metacat-index 20161122-10:20:15: [DEBUG]: Adding field: id [edu.ucsb.nceas.metacat.index.SolrIndex]
484
metacat-index 20161122-10:20:15: [DEBUG]: Adding field: isService [edu.ucsb.nceas.metacat.index.SolrIndex]
485
metacat-index 20161122-10:20:15: [DEBUG]: Adding field: serviceCoupling [edu.ucsb.nceas.metacat.index.SolrIndex]
486
metacat-index 20161122-10:20:15: [DEBUG]: Adding field: read_count_i [edu.ucsb.nceas.metacat.index.SolrIndex]
487

    
488
[ ... lines deleted ...]