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Bug #5184

closed

sanity check(s) when attempting to open owl file

Added by Derik Barseghian over 13 years ago. Updated over 13 years ago.

Status:
Resolved
Priority:
Normal
Assignee:
Sean Riddle
Category:
tagging
Target version:
2.1.0
Start date:
09/16/2010
Due date:
% Done:

0%

Estimated time:
Bugzilla-Id:
5184

Description

Intermittently on startup I get an error dialog, where tagging (or something) attempts to open an ontology file from a path that doesn't make sense -- it's basically two paths stuck together.

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 #1

Updated by Derik Barseghian over 13 years ago

As requested, stack trace:

[run] Ran additional initialization for module reporting from class org.kepler.module.reporting.Initialize
      [run] Kepler Initializing...
      [run] getAllRspnsElement  is null
      [run] org.semanticweb.owl.io.OWLOntologyCreationIOException: /Users/derik/dev2/kepler.modules.2.1/common-2.1/configs/ptolemy/configs/kepler/ontologies/Users/derik/KeplerData/modules/core/onto7934053400911427464.owl (No such file or directory)
      [run]     at uk.ac.manchester.cs.owl.ParsableOWLOntologyFactory.loadOWLOntology(ParsableOWLOntologyFactory.java:166)
      [run]     at uk.ac.manchester.cs.owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:380)
      [run]     at uk.ac.manchester.cs.owl.OWLOntologyManagerImpl.loadOntologyFromPhysicalURI(OWLOntologyManagerImpl.java:349)
      [run]     at org.kepler.sms.NamedOntModel.initialize(NamedOntModel.java:190)
      [run]     at org.kepler.sms.OntologyCatalog.initialize(OntologyCatalog.java:475)
      [run]     at org.kepler.sms.OntologyCatalog.initialize(OntologyCatalog.java:450)
      [run]     at org.kepler.sms.OntologyCatalog.<init>(OntologyCatalog.java:101)
      [run]     at org.kepler.sms.OntologyCatalog.instance(OntologyCatalog.java:119)
      [run]     at org.kepler.objectmanager.library.LibIndex.assureOntologyComponent(LibIndex.java:627)
      [run]     at org.kepler.objectmanager.library.LibIndex.rebuild(LibIndex.java:261)
      [run]     at org.kepler.objectmanager.library.LibraryManager.buildLibrary(LibraryManager.java:343)
      [run]     at org.kepler.moml.KARLibraryBuilder.buildLibrary(KARLibraryBuilder.java:78)
      [run]     at ptolemy.actor.gui.UserActorLibrary.openLibrary(UserActorLibrary.java:202)
      [run]     at ptolemy.actor.gui.UserActorLibrary.openUserLibrary(UserActorLibrary.java:140)
      [run]     at ptolemy.vergil.VergilApplication._createDefaultConfiguration(VergilApplication.java:330)
      [run]     at ptolemy.vergil.VergilApplication._createEmptyConfiguration(VergilApplication.java:347)
      [run]     at ptolemy.actor.gui.ConfigurationApplication._parseArgs(ConfigurationApplication.java:1128)
      [run]     at ptolemy.vergil.VergilApplication._parseArgs(VergilApplication.java:477)
      [run]     at ptolemy.actor.gui.ConfigurationApplication.<init>(ConfigurationApplication.java:226)
      [run]     at ptolemy.actor.gui.MoMLApplication.<init>(MoMLApplication.java:81)
      [run]     at ptolemy.vergil.VergilApplication.<init>(VergilApplication.java:110)
      [run]     at ptolemy.vergil.VergilApplication$1.run(VergilApplication.java:219)
      [run]     at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
      [run]     at java.awt.EventQueue.dispatchEvent(EventQueue.java:461)
      [run]     at java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:269)
      [run]     at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
      [run]     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:184)
      [run]     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:176)
      [run]     at java.awt.EventDispatchThread.run(EventDispatchThread.java:110)
      [run] Caused by: java.io.FileNotFoundException: /Users/derik/dev2/kepler.modules.2.1/common-2.1/configs/ptolemy/configs/kepler/ontologies/Users/derik/KeplerData/modules/core/onto7934053400911427464.owl (No such file or directory)
      [run]     at java.io.FileInputStream.open(Native Method)
      [run]     at java.io.FileInputStream.<init>(FileInputStream.java:106)
      [run]     at java.io.FileInputStream.<init>(FileInputStream.java:66)
      [run]     at sun.net.www.protocol.file.FileURLConnection.connect(FileURLConnection.java:70)
      [run]     at sun.net.www.protocol.file.FileURLConnection.getInputStream(FileURLConnection.java:161)
      [run]     at org.semanticweb.owl.io.AbstractOWLParser.getInputStream(AbstractOWLParser.java:105)
      [run]     at org.semanticweb.owl.io.AbstractOWLParser.getInputSource(AbstractOWLParser.java:128)
      [run]     at org.coode.owl.rdfxml.parser.RDFXMLParser.parse(RDFXMLParser.java:85)
      [run]     at uk.ac.manchester.cs.owl.ParsableOWLOntologyFactory.loadOWLOntology(ParsableOWLOntologyFactory.java:154)
      [run]     ... 28 more
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 #2

Updated by Sean Riddle over 13 years ago

This is fixed in r25854-8. Sanity checks are present now when saving and loading the ontology_catalog.xml file to ensure that it consists of valid data.

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 #3

Updated by Redmine Admin about 11 years ago

Original Bugzilla ID was 5184

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