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From 08/31/2010 to 09/29/2010

09/30/2010

10:41 PM Bug #5193: Open menu items should be merged into one
Giving this bug a new title and retargeting to 2.2. Derik Barseghian
10:37 PM Bug #5153: Save As... closes all windows associated with a workflow
Save Archive is now called Save As... , and this is still an issue.
The new Save (for kars) doesn't have this problem...
Derik Barseghian
10:28 PM Bug #5196: uploading to remote server error.
Yeah, it should be fixed now. There were actually two problems, the one you reported which I believe only affected th... Derik Barseghian
08:59 PM Bug #5196: uploading to remote server error.
I can upload to kepler-dev without updating my Kepler local copy. Does it mean it works now? I didn't try kepler-dev ... jianwu jianwu
05:48 PM Bug #5196: uploading to remote server error.
Should be fixed now in trunk and 2.1 w/ ben's check-ins at r25928 and r25929.
Jianwu can you try again and close this...
Derik Barseghian

09/29/2010

03:25 PM Bug #5196: uploading to remote server error.
More background info: I did it at Workflow Run Manager Tab. jianwu jianwu
03:23 PM Bug #5196 (Resolved): uploading to remote server error.
First of all, I think the popup dialog for workflow run uploading is not quite clear. It is 'To upload to a remote re... jianwu jianwu
02:36 PM Bug #5191: GUI improvements to Save As
I made ExtensionFileFilter public and updated the rel-8-0-beta-2 tree.
This indicates that you would need to update y...
Christopher Brooks
10:57 AM Bug #5191: GUI improvements to Save As
Yes, if making ExtensionsFileFilter public doesn't cause problems, I could use it.
Can you make this change if you'r...
Derik Barseghian
08:12 AM Bug #5191: GUI improvements to Save As
I agree that the issue is not critical. However, you are introducing new
functionality and it is not yet complete.
...
Christopher Brooks
06:26 PM Bug #5191: GUI improvements to Save As
I've fixed the title part.
'Save Archive (KAR)' in 2.0 is now 'Save As...' in 2.1, so these are issues in 2.0 as wel...
Derik Barseghian
01:21 PM Bug #5184: sanity check(s) when attempting to open owl file
This is fixed in r25854-8. Sanity checks are present now when saving and loading the ontology_catalog.xml file to ens... Sean Riddle
01:20 PM Bug #5185: common ontology_catalog.xml get modified
Fixed in r25854-8. This adds checks tomake sure that the original ontology_catalog.xml file from the common module is... Sean Riddle
01:13 PM Bug #5181: welcome window shows wrong version number
fixed. Derik Barseghian
11:42 AM Bug #5193: Open menu items should be merged into one
I agree having to understand the different open options is an annoyance, but this was a problem in 2.0 as well, it's ... Derik Barseghian
11:13 AM Bug #5193: Open menu items should be merged into one
Every first time user will try File | Open and not understand why
they cannot choose the .xml demos.
This sort of fa...
Christopher Brooks
10:59 AM Bug #5193: Open menu items should be merged into one
Sounds like you're using File=>Open... when you want to be using File=>Open MoML... Derik Barseghian
08:35 AM Bug #5193 (Resolved): Open menu items should be merged into one
Help | Kepler Documentation
says:
"All listed demos are in the KeplerData/workflows/module/outreach-2.X.Y/demos/...
Christopher Brooks
09:40 AM Bug #5195 (New): Help | Module Documentation is empty
In the 2.0.0developer trunk and the 2.1 tree,
Help | Module Documentation is empty.
The window says "Active Mod...
Christopher Brooks
08:40 AM Bug #5194 (Resolved): demos are difficult to find
Help | Kepler Documentation says:
"All listed demos are in the KeplerData/workflows/module/outreach-2.X.Y/demos/ge...
Christopher Brooks
08:16 AM Bug #5192 (New): Module Manager reacts badly to dot files in resources/configuration directory
I was trying to follow the 2.1 instructions at
https://kepler-project.org/developers/teams/build/kepler-2.1-release-...
Christopher Brooks

09/28/2010

03:21 PM Bug #5179: determine if ptolemy 8.0.0 is the desired version for kepler 2.1.0 release
If I was making this decision, I would ship 2.1 with the updated Ptolemy 8.0.beta-2 branch. That branch has changes ... Christopher Brooks
03:19 PM Bug #5191: GUI improvements to Save As
My opinion is that this should be fixed before 2.1 goes out.
2.1 introduces new functionality. This is a bug in that...
Christopher Brooks
03:09 PM Bug #5191 (Resolved): GUI improvements to Save As
Jing reports that the File > Save As... file filter should be KAR, instead of all files.
I also notice the title ...
Derik Barseghian
03:13 PM Bug #5165: implement a GUI Save action for KARs
done. Derik Barseghian
03:13 PM Bug #5178: Documentation links are broken in help doc-index.html
fixed Derik Barseghian
03:13 PM Bug #5182: documentation needs updating for 2.1
done. Derik Barseghian

09/25/2010

07:07 PM Bug #5190 (Resolved): 6.0WorkingWithDatasets describes OPeNDAP but not DataTurbine actor
Chapter 6 describes the OPeNDAP actor, but not the DataTurbine actor. Since both are included modules in the kepler s... Derik Barseghian

09/24/2010

04:04 PM Bug #5172: Exceptions are sometimes thrown during sensor workflow run
I've also seen this exception occasionally when using the Sensor actors. It's possible that the Sensor actor is doing... Daniel Crawl
03:53 PM Bug #5077: add real inputs and outputs to sensor actor
I created a demo workflow where the data values determine the sampling rate of a sensor.
It's in sensor-view/workflow...
Daniel Crawl
03:25 PM Bug #4742: create engineering view model type
When I start Kepler with the sensor-view at the top of modules.txt, the UI looks the same. It's not until I open a wo... Daniel Crawl
01:54 PM Bug #5179: determine if ptolemy 8.0.0 is the desired version for kepler 2.1.0 release
Hey Christopher, thanks very much for compiling this list.
I'm going to recommend we ship 2.1 using the same ptolemy ...
Derik Barseghian

09/23/2010

05:33 PM Bug #5183: Fix 6-WebServicesAndDataTransformation.xml
update: thanks to derik's suggestion, the changes are moved to outreach-2.1 and the outreach-2.0 is reverted back. So... jianwu jianwu

09/22/2010

03:09 PM Bug #5095: test kepler and wrp for memory leaks
as discussed with derik, one leak exists in org.kepler.workflowrunmanager.WorkflowRunManagerManager class and the cla... jianwu jianwu
05:59 PM Bug #5095: test kepler and wrp for memory leaks
To verify the changes, you can look for the instance number of ptolemy.gui.Top after opening and closing workflows. T... jianwu jianwu
05:54 PM Bug #5095: test kepler and wrp for memory leaks
Which changes in kepler trunk r25888 and ptolemy trunk r59134, mainly switching to Weak References in singleton class... jianwu jianwu
08:56 AM Bug #5189: When File -> Exit is choosen Kepler closes all workflows without warning
Personally, I prefer applications that actually exit when I select exit. :-)
However, I see the point here.
The enh...
Christopher Brooks
02:21 AM Bug #5189 (New): When File -> Exit is choosen Kepler closes all workflows without warning
This issue is related to multiple workflows execution. In order to reproduce it do as follows:
1. Open Kepler
2. ...
Michal Owsiak

09/21/2010

03:41 PM Bug #5183: Fix 6-WebServicesAndDataTransformation.xml
It is fixed at r25791 at 2.1 branch and r25792 at trunk. The solution is changing Webservice operation to another one... jianwu jianwu
03:34 PM Bug #5188: closing workflow does not save the location change of popup display windows.
In the newest Kepler menu setting http://mercury.nceas.ucsb.edu/kepler/pipermail/kepler-dev/2010-September/018920.htm... jianwu jianwu
03:16 PM Bug #5188 (Resolved): closing workflow does not save the location change of popup display windows.
To find the differences:
1) create a test workflow with display actors
2a) save the workflow as a kar
2b) save the...
jianwu jianwu
08:14 AM Bug #5179: determine if ptolemy 8.0.0 is the desired version for kepler 2.1.0 release
These changes are present in the 8.0 beta release branch, but
not present in r58234, which is what is in the Kepler p...
Christopher Brooks
10:04 PM Bug #5179: determine if ptolemy 8.0.0 is the desired version for kepler 2.1.0 release
There are quite a few other memory leaks in Kepler and reporting suite (not in Ptolemy). My target is to fix them in ... jianwu jianwu
06:47 PM Bug #5179: determine if ptolemy 8.0.0 is the desired version for kepler 2.1.0 release
Jianwu's made a few memory fixes already, but I believe he said he only wants to include them in 2.1 once he's done w... Derik Barseghian
06:17 PM Bug #5179: determine if ptolemy 8.0.0 is the desired version for kepler 2.1.0 release
Here's one change that should possibly go in to Kepler 2.1:
Jianwu's memory leak fix to
ptolemy.vergil.tree.EntityTr...
Christopher Brooks
11:18 PM Bug #5084: Allow test releases in the same location as actual releases.
I have added new functionality to the module manager and the build to allow test release to be hidden by default, but... David Welker
07:02 PM Bug #5165: implement a GUI Save action for KARs
Should be done in r25783, just needs more testing. Derik Barseghian

09/18/2010

06:14 PM Bug #5187 (New): GUI should make apparent unsaved changes
When you modify a document in most applications, on Mac, the red close button changes to have a dot in its center, de... Derik Barseghian

09/17/2010

05:29 PM Bug #5180: Add a new Export File menu option that does a Save As (model xml)
Done. You need to delete KeplerData/modules/gui/configuration/uiMenuMappings_en_US.xml if you have one. I believe tag... Derik Barseghian
05:10 PM Bug #5186: Publish example KARs to repository
Removed the 2 kars.
Changing title, we just need to publish example kars now.
Derik Barseghian

09/16/2010

04:53 PM Bug #5185: common ontology_catalog.xml get modified
Here's an example of a modified common-2.1/configs/ptolemy/configs/kepler/ontologies/ontology_catalog.xml
<?xml vers...
Derik Barseghian
02:01 PM Bug #5185 (Resolved): common ontology_catalog.xml get modified
Sometimes kepler modifies ontology_catalog.xml file in the common module. This shouldn't happen. Derik Barseghian
04:39 PM Bug #5184: sanity check(s) when attempting to open owl file
As requested, stack trace:
[run] Ran additional initialization for module reporting from class org.kepler.module.re...
Derik Barseghian
01:59 PM Bug #5184 (Resolved): sanity check(s) when attempting to open owl file
Intermittently on startup I get an error dialog, where tagging (or something) attempts to open an ontology file from ... Derik Barseghian
02:55 PM Bug #5158: remaining provenance issues for 2.1 release
Retargeting, Dan did what needed doing for 2.1. Derik Barseghian
02:10 PM Bug #5186 (Resolved): Publish example KARs to repository
The two KARs on the kepler library were published inadvertently, and may and should be removed, because they are not ... Derik Barseghian
01:52 PM Bug #5183 (Resolved): Fix 6-WebServicesAndDataTransformation.xml
This work isn't working. Jianwu reports it's because a web service is down. We should fix or remove this getting-star... Derik Barseghian
01:46 PM Bug #5182 (Resolved): documentation needs updating for 2.1
All the docs need reading and updating for 2.1.
Screenshots showing the old File menu will have to be updated when i...
Derik Barseghian
01:42 PM Bug #5181 (Resolved): welcome window shows wrong version number
Christopher reports the welcome window shows the wrong version number in 2.1. Derik Barseghian
01:35 PM Bug #5180 (Resolved): Add a new Export File menu option that does a Save As (model xml)
After discussion with Christopher: add a File menu Export option that does what the old Save As used to do, a save as... Derik Barseghian
01:31 PM Bug #5179 (Resolved): determine if ptolemy 8.0.0 is the desired version for kepler 2.1.0 release
Christopher wants to check if there have been any critical fixes in ptolemy since kepler 2.0.0 was released, to see i... Derik Barseghian
01:27 PM Bug #5178 (Resolved): Documentation links are broken in help doc-index.html
Beneath Help=> Kepler Documentation
the documentation links in the Local Copy column are broken in the 2.1 release.
Derik Barseghian
01:20 PM Bug #5165: implement a GUI Save action for KARs
Retargeting to 2.1 after discussion w/ Christopher. Derik Barseghian
11:57 PM Bug #5161: can't always use Module Manager to change to an older patch of a suite
I have actually decided to address this problem with a new feature. Now the user, in addition to selecting a particul... David Welker
05:46 PM Bug #5145: kepler library skin is mostly broken
The new kepler library server is up and the bug was closed. We also open a new bug 5177 for the enhancement of workfo... Jing Tao
05:43 PM Bug #5177 (New): Enhance displaying workflow in kepler server library skin
This bug is the secondary stag of bug 5145.
Here are from matt:
If you are in the process of revamping this sty...
Jing Tao

09/15/2010

11:15 AM Bug #5146: modifying and saving the composite sinewave actor fails
I played with Sinewave actor and noticed exactly same behavior as described. When I tried to change annotation, chang... Madhusudan Gujral

09/13/2010

12:14 PM Bug #5175 (New): Fix remaining issues with exporting multiple runs into one KAR
In 2.1, opening a KAR that contains two workflows and report layouts won't necessarily open the report layouts.
T...
Derik Barseghian

09/10/2010

09:47 PM Bug #5074: Fix the release process so modules can be released from Windows machines.
Fixed by detecting when the OS is Windows and reporting to the user the location to import to manually. The problem w... David Welker

09/09/2010

02:02 AM Bug #5125: Add feature to do a one-step revert of a botched update from outside of Kepler
Rollback functionality has now been implemented. David Welker

09/08/2010

04:34 PM Bug #5174: Reduce the number of modules in Kepler CORE.
My theory about the number of modules is that tool developers want
to have many modules because they see all the comb...
Christopher Brooks
04:26 PM Bug #5174 (Resolved): Reduce the number of modules in Kepler CORE.
The number of modules in Kepler is a little bit overwhelming. If the user was required to specify modules.txt manuall... David Welker
04:24 PM Bug #5173 (New): Develop clear criteria for when code in Kepler CORE should be in its own module.
As of now, we have broken up Kepler into a number of modules. But this breaking up of Kepler has been ad hoc and not ... David Welker
04:15 PM Bug #5172 (Resolved): Exceptions are sometimes thrown during sensor workflow run
When running a sensor workflow (importing the localhost sensor simulator site), I will intermittently encounter one o... Sean Riddle
03:25 PM Bug #5157: Devise approach for when patching should occur when changes occur via the module-manager.
I think our current approach is adequate. The assumption is that when a user selects a patch, they are interested in ... David Welker

09/07/2010

09:35 AM Bug #5122: Develop an approval process for patches
What are we doing with respect to this item? Are we going to develop a more formal process? David Welker
09:18 AM Bug #5125: Add feature to do a one-step revert of a botched update from outside of Kepler
This sounds interesting. That there are two different bugs that might be solved by a "rollback" feature makes me wond... David Welker
09:10 AM Bug #5161: can't always use Module Manager to change to an older patch of a suite
This is an interesting point.
The issue is this. If you a suite references ^ at the end, it means, use the latest av...
David Welker

09/06/2010

10:15 PM Bug #5073: In module manager, display the current suite name as well as a fully resolved list of modules.
Done. David Welker

09/04/2010

06:42 PM Bug #5033: Workflow Run Manager - Allow multiple instances of WRM in one Kepler instance
Currently, in the WRMM a WRM may be shared among X windows (the identifier i'm using for a window is a tableauFrame).... Derik Barseghian

09/03/2010

04:39 PM Bug #5164: Don't show Workflow Run Manager and tag workflow drop-down list on Schedule tab of Workflow Scheduler view
We also don't want to show the "Tag workflow" drop-down list on Schedule tab. We do want it to show on the Server Rep... Jing Tao
12:54 PM Bug #5171 (New): link workflow in components tree to workflow in scheduler view
Once a workflow has been uploaded to a repository, a user might want to schedule it for execution. To make this proce... Daniel Crawl
12:48 PM Bug #5170 (New): uploading a workflow requires a refresh
When a workflow is uploaded to a remote repository, the component tree must be searched again before the workflow app... Daniel Crawl
12:46 PM Bug #5169 (Resolved): select more than one remote repository
The Component Preferences tab only allows a single remote repository to be selected at a time. By selecting more than... Daniel Crawl
12:40 PM Bug #5045: Add a menu to add and configure new remote kepler servers
The workflow scheduler servers in Figs 6 & 7 are the same as the "remote repositories" that can be selected in the ex... Daniel Crawl

09/01/2010

03:15 PM Bug #5168: 'ant change-to' fails at r25610
Fixed. David Welker
09:49 AM Bug #5168 (Resolved): 'ant change-to' fails at r25610
# ant change-to -Dsuite=kepler
Buildfile: build.xml
change-to:
[change-to] Retrieving modules....
[change-to]
...
Daniel Crawl
01:18 AM Bug #5167 (Resolved): Fix bug so that the correct modules.txt is always used.
Now that there are two modules.txt, there are situations where the incorrect modules.txt is sometimes used. David Welker
01:16 AM Bug #5166 (Resolved): Patch Kepler 2.0.0 so that the module manager can switch from Kepler-2.2.0 to Kepler-2.0.0 or Kepler-2.0.1
The issue here are that the significant changes to the build system have changed the way the module manager works. Th... David Welker
01:02 AM Bug #5065: In shared or administrative installations, the ability to store modules.txt and extra modules locally. This way, the module manager will work smoothly on Windows without having to run as an administrator.
I have finally implemented a variation on solution (5). Basically, when a flag is present (.utilize.user.kepler.modul... David Welker
05:55 PM Bug #4801: out of memory
I changed several hashmap/hashtable/vector variables in some static classes, one static hashmap variable in a normal ... jianwu jianwu

08/31/2010

01:16 PM Bug #5045: Add a menu to add and configure new remote kepler servers
I'm going to start working on this, under the assumption we still want a new tab in Preferences where a user can add,... Derik Barseghian
 

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