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From 02/16/2011 to 03/17/2011

03/17/2011

09:02 AM Revision 6013 (metacat): use newer ecogrid tag to allow omission of the ecogrid query title (as is allowed in the query.xsd schema)
ben leinfelder
10:56 PM Revision 6012 (metacat): add support for temporal element query in pathquery
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2084 ben leinfelder
10:55 PM Bug #2084: Pathquery support for temporal search on date fields
Added nodedatadate column to the following tables: xml_nodes, xml_nodes_revisions, xml_path_index.
Included DB update...
ben leinfelder

03/12/2011

07:21 AM Revision 6011 (metacat): add otherEntity physical elements to indexPaths (ndp)
ben leinfelder

03/04/2011

03:23 PM Revision 6010 (metacat): replace derik's settings with previous version
ben leinfelder
03:14 PM Revision 6009 (metacat): add paths to indexPaths, and kar namespaces to indexNamespaces for Kepler Workflow Run Manager run-kar queries
barseghian
02:52 PM Revision 6008 (metacat): include simple union data for search results if they are present in the resultset document
ben leinfelder
09:56 AM Revision 6007 (metacat): include temporal coverage dates in the path index - (for opendap metadata queries)
ben leinfelder

03/03/2011

08:15 AM Revision 6006 (metacat): Fixed the testNCEASLogin() password that I mistakenly changed.
Chris Jones
07:47 AM Revision 6005 (metacat): Now that MetacatHandler creates GUID identifier mappings and system metadata, many of the tests in IdentifierManagerTest were failing that were manually creating id mappings and system metadata.
Modified testCreateMapping() and testCreateSystemMetadataMapping() to use docids that haven't been inserted to just e... Chris Jones
04:44 PM Revision 6004 (metacat): Added a new test method testDeleteDocumentByGUID() to ensure MetacatHandler can delete based on GUID, but fall back to docid if the GUID isn't present. Modified CrudServiceTest and made some private methods public to leverage the D1 REST calls in that library (i.e. create() a doc with a GUID).
Chris Jones

03/02/2011

02:47 PM Revision 6003 (metacat): The DataONE service API jar has been renamed to d1_common_java-0.5.0.jar, updated the build file accordingly. Added debug echo of the test classpath.
Chris Jones
02:14 PM Revision 6002 (metacat): hide the data section unless there is actually data to display
ben leinfelder
02:12 PM Revision 6001 (metacat): DocumentImpl.delete() now throws finer grained exceptions (not a general exception). Consequently, the classes that call it have been updated to handle the thrown exceptions, including CrudService, ReplicationHandler, and ReplicationService.
Chris Jones
10:39 AM Revision 6000 (metacat): refactor the names of these Data Manager implementation classes so that it's easier to use them with the default/local versions of similar. These classes utilize Metacat-specific configuration values rather than relying soley on the bundles that are used in the stand-alone DM lib.
ben leinfelder

03/01/2011

02:00 PM Revision 5999 (metacat): render the <data/> CDATA section in <pre/> - it's a csv string
ben leinfelder
09:13 AM Revision 5998 (metacat): To support GUIDs in MetacatHandler.handleDeleteAction(), I've added in a new method:
deleteFromMetacat() - deletes a document based on the docid
This factors the deletion code out of handleDeleteAction(...
Chris Jones

02/28/2011

02:42 PM Revision 5997 (metacat): only include data value/operator when present in the form
ben leinfelder
02:42 PM Revision 5996 (metacat): refresh search when the data operator changes (changing the value is less clear...keyup event seems too eager)
ben leinfelder
11:57 AM Revision 5995 (metacat): use correct operators
ben leinfelder

02/25/2011

12:01 PM Revision 5993 (metacat): include data search - new form fields and semQuery schema to allow searching for Characteristics data
ben leinfelder

02/22/2011

09:46 AM Bug #5316: Interactive map doesn't work with firefox
This is a known issue with the old MapBuilder interface used to render the spatial layers in Metacat 1.9.x.
The forth...
ben leinfelder

02/19/2011

06:57 AM Bug #5316 (Resolved): Interactive map doesn't work with firefox
The interactive map, for example
http://knb.ecoinformatics.org/knb/style/skins/nceas/map.jsp
doesn't work with ...
Eva-Maria Gerstner

02/18/2011

12:28 PM Revision 5992 (metacat): turn off the databounds layer by default
ben leinfelder
12:09 PM Revision 5991 (metacat): new lines were showing up in the html source becuase of whitespace in this - removed the white space and the new lines are gone...
ben leinfelder
11:54 AM Revision 5990 (metacat): restyle the eml display and resultset after applying new eml css to the KNB L+F
ben leinfelder
11:16 AM Revision 5989 (metacat): new jar files from common and client
berkley
10:59 AM Revision 5988 (metacat): fixed width issue with default header
berkley
10:59 AM Revision 5987 (metacat): new files for mets style
berkley
10:10 AM Revision 5986 (metacat): [untested] loop through each origin[ator] to make a row for them
ben leinfelder
05:16 PM Revision 5985 (metacat): restyle the resultset after applying new eml css
use more robust form-submission js for the datapackage links ben leinfelder
04:30 PM Revision 5984 (metacat): check for 'null' as well as 'public' user when rendering the header Login/Logout option
ben leinfelder

02/17/2011

03:44 PM Revision 5983 (metacat): restyle default eml rendering using ESA look + feel
ben leinfelder
12:11 PM Revision 5982 (metacat): include eml css and then adjust lter skin to accommodate the new xsls
ben leinfelder
11:50 AM Revision 5981 (metacat): adjust stylesheets to accommodate new default eml rendering
ben leinfelder
11:28 AM Revision 5980 (metacat): use latest eml style tag
ben leinfelder
11:24 AM Revision 5979 (metacat): adjust stylesheets to accommodate new default eml rendering
ben leinfelder
09:45 AM Revision 5978 (metacat): use square edges for the borders around table groups and subgroups
ben leinfelder
02:57 AM Revision 5977 (metacat): These are fairly significant changes to MetacatHandler.handleInsertOrUpdateAction() that add in support for creation or update of GUIDs and SystemMetadata. Upon insertion or update of DataPackages from non-DataONE aware clients (such as Morpho), the identifier table is updated by creating a GUID, and the systemmetadata table is updated with fields after the EML document is parsed for distribution information and entity typing. System Metadata documents are also generated and inserted into Metacat. The list of data entities is iterated over and System Metadata is generated for each data file as well.
Chris Jones
02:39 AM Revision 5976 (metacat): In MetacatHandler I've removed updateSystemMetadata() in favor of additions to insertOrUpdateSystemMetadata(). Modified createSystemMetadata() to reflect the changes as well.
Chris Jones
06:23 PM Revision 5975 (metacat): Modified MetacatHandler.createSystemMetadata() to take a localId, not a guid as an argument since there are times when the guid has yet to have been created, and it is created in this method if so.
Also, put the read() call to get the InputStream of the data/metadata document into it's own try/catch statement. Chris Jones
04:36 PM Revision 5974 (metacat): adjust to fit new EML look and feel
ben leinfelder

02/16/2011

03:58 PM Revision 5973 (metacat): additional overrides for color
ben leinfelder
03:58 PM Revision 5972 (metacat): added mets to default skin
berkley
03:25 PM Revision 5971 (metacat): use white links override only in header menu
ben leinfelder
03:11 PM Revision 5970 (metacat): force the leftnav section to wrap their links
ben leinfelder
02:40 PM Revision 5969 (metacat): override problematic CSS properties that were introduced as part of the new look and feel for default EML display
ben leinfelder
01:56 PM Revision 5968 (metacat): Somehow missed adding in javadoc for read(). Here it is.
Chris Jones
01:52 PM Revision 5967 (metacat): For now, getSystemMetadata() will be private like the other *SystemMetadata() methods.
Chris Jones
01:47 PM Revision 5966 (metacat): Modified MetacatHandler, updated the getSystemMetadata() method to now use read() and deserializeSystemMetadata() to produce the SystemMetadata object. Exceptions are pushed up the stack, and so accordingly, modified createSystemMetadata() to reflect the changes.
Chris Jones
01:44 PM Revision 5965 (metacat): stylesheet/skins for mets data
berkley
11:38 AM Revision 5964 (metacat): use newer EML stylesheet tag
ben leinfelder
11:18 AM Revision 5963 (metacat): correctly include table cells for xsl
ben leinfelder
09:25 AM Revision 5962 (metacat): Modified MetacatHandler, added createSystemMetadata() - generates SystemMetadata objects for newly inserted data or documents. This is intended to be used from handleInsertOrUpdateAction(), and only for documents being inserted from clients that don't support the DataONE interface. The method parses EML documents to discover data entities, and updates the system metadata for those entries, with support for describes and describedBy metadata. Currently doesn't handle FGDC, etc. documents.
Added sizeOfStream() - Find the size (in bytes) of a stream. Note: This needs to refactored out of MetacatHandler and... Chris Jones
09:14 AM Revision 5961 (metacat): Modified MetacatHandler, added three methods:
getSystemMetadata() - returns a SystemMetadata object from the systemmetadata table using the given GUID. Stub only.
...
Chris Jones
09:10 AM Revision 5960 (metacat): Modified MetacatHandler and added two methods:
serializeSystemMetadata() - Serialize a SystemMetadata object to XML string
deserializeSystemMetadata() - Deserialize...
Chris Jones
09:07 AM Revision 5959 (metacat): Modified MetacatHandler, added read() - Read a document from metacat and return an InputStream. The XML or data document should be on disk, but if not, read from the metacat database. This method should be optimized, along with others, to not write stream data to disk for performance reasons.
Chris Jones
09:06 AM Revision 5958 (metacat): To support generation of SystemMetadata and GUIDs, added a number of methods to MetacatHandler that are also in CrudService(). CrudService should eventually be refactored to use the handler methods. Added:
readFromFilesystem() - Read a file from Metacat's configured file system data directory, and return a FileInputStream... Chris Jones
 

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