Activity
From 11/26/2011 to 12/25/2011
12/21/2011
- 02:08 PM Bug #5569: The sanparks skin doesn't show welcome message when user login again (after doing logout)
- It turns out, the html page showing after logout used a wrong js function for login.
After modifying the sanparksLog... - 01:41 PM Bug #5569 (Resolved): The sanparks skin doesn't show welcome message when user login again (after doing logout)
- When user first time logins, the sanpark skin will show a welcome message, upload data link and search form.
Howev... - 01:53 PM Bug #5523: setting authoritative MN and rightsHolder for KNB data on conversion
- We decided to generate system metadata for every object housed in the KNB and use the KNB nodeId as the authoritative...
12/20/2011
- 11:57 AM Bug #5567: Click the schedule button on sankparks skin got an blank page
- In scheduleWorkflowRun.jsp file, it has code like:
String karId = LSIDUtil.getDocId(karLsid, false);
PermissionContro... - 11:52 AM Bug #5568 (Resolved): Get an exception during startup metacat
- I got an exception when i started metacat. However, it seems that metacat still can work.
SEVERE: /127.0.0.1:570...
12/16/2011
- 02:48 PM Bug #5560: Upgrade access control rules in Metacat DB
- I'm now also forcing the shared System Metadata map to reload into memory all the system metadata for data objects th...
- 10:03 AM Bug #5522: download linked KNB data and convert links in EML to ORE packages
- From discussion yesterday:
Converting a node from KNB to D1
--------------------------------------------------
0. Ge...
12/15/2011
- 12:22 PM Bug #5536: Restore replicated data files that are 0 bytes
- Current proposal for upgrade script solution:
-find all data files in the configured data directory for Metacat
-dele... - 10:40 AM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- Jing says it's fixed!
- 10:31 AM Bug #5567 (Resolved): Click the schedule button on sankparks skin got an blank page
- Click TPC worklfow link on the sanparks skin, user will get a list of workflows. Every workflow has three associated ...
12/13/2011
- 04:43 PM Bug #5563: Kepler can't get search result from metacat 2.0.0
- It turned out that the ecogrid tag (1.2.2.rc4) which the trunk used has wrong version of ecogridToPathquery.xsl. The ...
- 03:49 PM Bug #5534: Replication log somehow doesn't work.
- As configured, all INFO level (and above) messages for ReplicationLogging will go to the replication log file and not...
- 03:09 PM Bug #5532: Use strict build tag strategy for 2.0.0 release
- there is an Ecogrid change needed
- 02:58 PM Bug #5516: continue updating user documentation
- Also add in the OAI-PMH documentation contributed by Duane Costa.
- 11:07 AM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
- Now the cache key is using populated string with parameter values rather than just "?". It is working.
- 10:19 AM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
- Yeah.
this is the way i am doing :) - 10:18 AM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
- Good catch!
We can use the query string _after_ the parameter values are bound to the prepared statement.
Would look... - 10:21 AM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
- I played around with that, but it basically means the Perl code would have to act as a proxy for the browser session ...
12/12/2011
- 04:48 PM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
- I like main page still keeping to use Java login. So user can do uploading data, schedule workflow et al without inst...
- 12:22 PM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
- I've fixed the first issue where after logging in from the "Register Data" you are now redirected to the registry for...
- 11:00 AM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
- And the login/logout action on the home page seems not affect the login status on the "Register Data" at all.
- 01:51 PM Bug #5560: Upgrade access control rules in Metacat DB
- Access control JUnit tests are all passing. I would like to test this from a 1.9.5 Metacat installation being upgrade...
- 01:49 PM Bug #5532: Use strict build tag strategy for 2.0.0 release
- okay, that's simple enough to have agreed on!
- 01:49 PM Bug #5523: setting authoritative MN and rightsHolder for KNB data on conversion
- More musing on the authoritative MN/replica policy for upgrading Metacat deployments:
-If we only generate SystemMeta...
12/09/2011
- 04:40 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
- in the cache system, we use the combination of the selection and extended query as the key to store the cache result....
- 04:05 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
- After restarting tomcat, i ran the two queries on the dev skin. The second one is from cache. This is wrong since the...
- 04:29 PM Bug #5534: Replication log somehow doesn't work.
- Ben: after you change the debug level, the replication log will go to catalina.out or the metacatreplication.log file...
- 04:25 PM Bug #5534: Replication log somehow doesn't work.
- had to add the log level when defining the replication logger:
log4j.logger.ReplicationLogging=INFO, replication - 02:56 PM Bug #5560: Upgrade access control rules in Metacat DB
- Metacat now tracks permissions for each revision of a document/data object.
The upgrade goes like this:
1. Generate ... - 10:21 AM Bug #5114: ESA registry: Bad link in 'register dataset' instructions
- Added "esa" context to the URL so now it points to the correct page.
http://data.esa.org/esa/cgi-bin/register-dataset...
12/08/2011
- 04:15 PM Bug #5523: setting authoritative MN and rightsHolder for KNB data on conversion
- On further reflection, I think we might only want to be generating SystemMetadata for objects that were added directl...
- 03:13 PM Bug #5523: setting authoritative MN and rightsHolder for KNB data on conversion
- We can certainly find out our local KNB MN Id since it will be configured, but I'm not sure how we would go about def...
- 04:10 PM Bug #5244: ldapweb.cgi shouldn't report ou=Account accounts since they're unusable
- Used Jing's test server to verify that ou=Account entries were not shown.
http://chico1.dyndns.org/knb/cgi-bin/ldapwe... - 03:52 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
- Items I am suspicious about:
2(c)(i) -- Generating new objects from external data (URLs) that metadata points to. The... - 02:44 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
- No, it is not. I haven't update your code yet.
I figured it out somehow the search result was cached even the querie... - 02:17 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
- Do you think this is because of the new permission handling in Metacat?
The change I just made to trunk means that e...
12/07/2011
- 02:42 PM Bug #5566 (Resolved): Click View Run link get 0 result if user doesn't login on the sanparks skin
- On the sanparks skin, if you click the TPC workflows link, you will get a list of workflows. There are three actions ...
- 01:12 PM Bug #5544: the footer of the output page after clicking TPC status/workflow can't be read on Sanparks skin
- It turns out that the TPC workflow/status use another set of css and jsp files. I use the the way of home page to rep...
12/06/2011
- 03:48 PM Bug #5563 (Resolved): Kepler can't get search result from metacat 2.0.0
- I used kepler 2.3 to do a % query against a metacat which was built from the trunk. It didn't show any result. Actual...
12/05/2011
- 09:02 AM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- Hi, Ben:
I just tried and the sql error has gone. Thanks!
However, it seems that all worklfow and run kar files are...
12/02/2011
- 05:36 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- One problem was that the predicate expression was incorrectly escaping the predicate quotes -- now that they are prep...
- 04:23 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- The parameterValues is:
[karEntry/karEntryAttributes/tpcStatus, mainAttributes/lsid, karEntry/karEntryAttributes/Name... - 04:22 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- The sql statement is:
select xml_nodes.docid, xml_index.path, xml_nodes.nodedata, xml_nodes.parentnodeid, xml_nodes.... - 04:21 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- The pathquery doesn't work:
<pathquery version='1.2'><returndoctype>http://www.kepler-project.org/kar-2.0.0</returndo... - 04:19 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- Okay. It turned out the query on comment 2 does work.
- 03:39 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- i added a printStatckTrace statement and it gave me this:
at org.postgresql.core.v3.SimpleParameterList.bind(SimplePa... - 03:36 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- actually, it is not only for the sanpark skin. This query will cause same issue:
<?xml version="1.0"?>
<pathquery ver... - 10:31 AM Bug #5561 (Resolved): Got a SQL error when click TPC workflows or TPC link on sanparks skin
- Clicked TPC status, I saw:
knb 20111202-10:30:51: [ERROR]: DBQuery.createResultDocument - SQL Error: The column in... - 11:28 AM Bug #5562: Got an NPE when upgrade db from 1.9.5 to 2.0.0
- it was possible to have a null prepared statement if there were no data values to convert to dates -- now checking fo...
- 11:23 AM Bug #5562 (Resolved): Got an NPE when upgrade db from 1.9.5 to 2.0.0
- knb 20111202-11:20:14: [ERROR]: SkinsAdmin.configureSkins - Could not find properties for skin: semtools [edu.ucsb.nc...
- 11:25 AM Bug #5560: Upgrade access control rules in Metacat DB
- By removing the 'docid' column from the 'xml_access' table, we introduce a huge amount of refactoring -- the custom E...
- 09:02 AM Bug #5560 (Resolved): Upgrade access control rules in Metacat DB
- Metacat handles a single access control policy for ALL revisions of an object whereas DataONE allows different access...
12/01/2011
- 04:34 PM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
- If you login on the sanparks home page, you will get the login form when you click Register Data link. It seems that ...
- 03:43 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
- Use accessBlock parameter on setaccess action to replace the original access rules by the new access rules. The new a...
- 12:29 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
- Disregard the Xerces panic -- I had an old XercesImpl.jar hanging out in my classpath.
11/30/2011
- 01:06 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
- Using the Foresite library in Metacat to build the ORE maps fails because of jar dependencies. The dependencies are a...
11/29/2011
- 09:46 AM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
- reopen this bug since ben added a comment on bug 5553:
There is currently a method in Metacat's access API that allo... - 09:38 AM Bug #5553: setaccess action may have deleting access rule functionality
- Sounds like we can use it. However, we have to parse the returned result of action=getaccesscontrol in order to prese...
- 09:16 AM Bug #5553: setaccess action may have deleting access rule functionality
- There is currently a method in Metacat's access API that allows you to set the entire access block for a given docume...
11/28/2011
- 04:53 PM Bug #5553: setaccess action may have deleting access rule functionality
- When this bug is fixed, we should reopen the bug 5551:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5551 - 04:53 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
- Now we had temporary solution for set/revoke public readable access:
user can grant public access to a document, then... - 02:36 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
- For the issue on comment 4, I found the clientViewBean object wasn't set sesssion id in ClientViewHelper.java. After ...
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