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From 12/07/2011 to 01/05/2012

01/05/2012

02:15 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
I'm now downloading remote data that is referenced by EM documents, saving it on the MN with an "autogen" ID and incl... ben leinfelder
11:07 AM Bug #5520: Create replication integration test suite
These tests also cover access control updates. ben leinfelder

01/04/2012

02:02 PM Bug #5520: Create replication integration test suite
current tests:
-certificates are valid and configured correctly between A and B
-data from A to B
-EML from A to B
ben leinfelder
11:28 AM Bug #5568: Get an exception during startup metacat
wasn't able to replicate this, but will keep an eye out. There's been quite a lot of churn around the DB tables, so i... ben leinfelder

01/03/2012

11:26 AM Bug #5568: Get an exception during startup metacat
It looks like this is due to a null SystemMetadata.size entry in the underlying table. I'm not sure how a null could ... ben leinfelder
11:11 AM Bug #5517: mark EcoGrid and Servlet APIs as deprecated
added notes to the user documentation indicating that these APIs are deprecated ben leinfelder
10:59 AM Bug #5536: Restore replicated data files that are 0 bytes
I created another "upgrader" that will remove the empty replicated data files so that they can be re-replicated using... ben leinfelder

12/21/2011

02:08 PM Bug #5569: The sanparks skin doesn't show welcome message when user login again (after doing logout)
It turns out, the html page showing after logout used a wrong js function for login.
After modifying the sanparksLog...
Jing Tao
01:41 PM Bug #5569 (Resolved): The sanparks skin doesn't show welcome message when user login again (after doing logout)
When user first time logins, the sanpark skin will show a welcome message, upload data link and search form.
Howev...
Jing Tao
01:53 PM Bug #5523: setting authoritative MN and rightsHolder for KNB data on conversion
We decided to generate system metadata for every object housed in the KNB and use the KNB nodeId as the authoritative... ben leinfelder

12/20/2011

11:57 AM Bug #5567: Click the schedule button on sankparks skin got an blank page
In scheduleWorkflowRun.jsp file, it has code like:
String karId = LSIDUtil.getDocId(karLsid, false);
PermissionContro...
Jing Tao
11:52 AM Bug #5568 (Resolved): Get an exception during startup metacat
I got an exception when i started metacat. However, it seems that metacat still can work.
SEVERE: /127.0.0.1:570...
Jing Tao

12/16/2011

02:48 PM Bug #5560: Upgrade access control rules in Metacat DB
I'm now also forcing the shared System Metadata map to reload into memory all the system metadata for data objects th... ben leinfelder
10:03 AM Bug #5522: download linked KNB data and convert links in EML to ORE packages
From discussion yesterday:
Converting a node from KNB to D1
--------------------------------------------------
0. Ge...
ben leinfelder

12/15/2011

12:22 PM Bug #5536: Restore replicated data files that are 0 bytes
Current proposal for upgrade script solution:
-find all data files in the configured data directory for Metacat
-dele...
ben leinfelder
10:40 AM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
Jing says it's fixed! ben leinfelder
10:31 AM Bug #5567 (Resolved): Click the schedule button on sankparks skin got an blank page
Click TPC worklfow link on the sanparks skin, user will get a list of workflows. Every workflow has three associated ... Jing Tao

12/14/2011

04:43 PM Bug #5563: Kepler can't get search result from metacat 2.0.0
It turned out that the ecogrid tag (1.2.2.rc4) which the trunk used has wrong version of ecogridToPathquery.xsl. The ... Jing Tao

12/13/2011

03:49 PM Bug #5534: Replication log somehow doesn't work.
As configured, all INFO level (and above) messages for ReplicationLogging will go to the replication log file and not... ben leinfelder
03:09 PM Bug #5532: Use strict build tag strategy for 2.0.0 release
there is an Ecogrid change needed ben leinfelder
02:58 PM Bug #5516: continue updating user documentation
Also add in the OAI-PMH documentation contributed by Duane Costa. Matt Jones
11:07 AM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
Now the cache key is using populated string with parameter values rather than just "?". It is working. Jing Tao
10:19 AM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
Yeah.
this is the way i am doing :)
Jing Tao
10:18 AM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
Good catch!
We can use the query string _after_ the parameter values are bound to the prepared statement.
Would look...
ben leinfelder
10:21 AM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
I played around with that, but it basically means the Perl code would have to act as a proxy for the browser session ... ben leinfelder
04:48 PM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
I like main page still keeping to use Java login. So user can do uploading data, schedule workflow et al without inst... Jing Tao

12/12/2011

01:51 PM Bug #5560: Upgrade access control rules in Metacat DB
Access control JUnit tests are all passing. I would like to test this from a 1.9.5 Metacat installation being upgrade... ben leinfelder
01:49 PM Bug #5532: Use strict build tag strategy for 2.0.0 release
okay, that's simple enough to have agreed on! ben leinfelder
01:49 PM Bug #5523: setting authoritative MN and rightsHolder for KNB data on conversion
More musing on the authoritative MN/replica policy for upgrading Metacat deployments:
-If we only generate SystemMeta...
ben leinfelder
12:22 PM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
I've fixed the first issue where after logging in from the "Register Data" you are now redirected to the registry for... ben leinfelder
11:00 AM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
And the login/logout action on the home page seems not affect the login status on the "Register Data" at all. Jing Tao

12/10/2011

04:40 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
in the cache system, we use the combination of the selection and extended query as the key to store the cache result.... Jing Tao
04:05 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
After restarting tomcat, i ran the two queries on the dev skin. The second one is from cache. This is wrong since the... Jing Tao
04:29 PM Bug #5534: Replication log somehow doesn't work.
Ben: after you change the debug level, the replication log will go to catalina.out or the metacatreplication.log file... Jing Tao
04:25 PM Bug #5534: Replication log somehow doesn't work.
had to add the log level when defining the replication logger:
log4j.logger.ReplicationLogging=INFO, replication
ben leinfelder

12/09/2011

02:56 PM Bug #5560: Upgrade access control rules in Metacat DB
Metacat now tracks permissions for each revision of a document/data object.
The upgrade goes like this:
1. Generate ...
ben leinfelder
10:21 AM Bug #5114: ESA registry: Bad link in 'register dataset' instructions
Added "esa" context to the URL so now it points to the correct page.
http://data.esa.org/esa/cgi-bin/register-dataset...
ben leinfelder
04:15 PM Bug #5523: setting authoritative MN and rightsHolder for KNB data on conversion
On further reflection, I think we might only want to be generating SystemMetadata for objects that were added directl... ben leinfelder
04:10 PM Bug #5244: ldapweb.cgi shouldn't report ou=Account accounts since they're unusable
Used Jing's test server to verify that ou=Account entries were not shown.
http://chico1.dyndns.org/knb/cgi-bin/ldapwe...
ben leinfelder

12/08/2011

03:52 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
Items I am suspicious about:
2(c)(i) -- Generating new objects from external data (URLs) that metadata points to. The...
ben leinfelder
03:13 PM Bug #5523: setting authoritative MN and rightsHolder for KNB data on conversion
We can certainly find out our local KNB MN Id since it will be configured, but I'm not sure how we would go about def... ben leinfelder
02:44 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
No, it is not. I haven't update your code yet.
I figured it out somehow the search result was cached even the querie...
Jing Tao
02:17 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
Do you think this is because of the new permission handling in Metacat?
The change I just made to trunk means that e...
ben leinfelder

12/07/2011

02:42 PM Bug #5566 (Resolved): Click View Run link get 0 result if user doesn't login on the sanparks skin
On the sanparks skin, if you click the TPC workflows link, you will get a list of workflows. There are three actions ... Jing Tao
01:12 PM Bug #5544: the footer of the output page after clicking TPC status/workflow can't be read on Sanparks skin
It turns out that the TPC workflow/status use another set of css and jsp files. I use the the way of home page to rep... Jing Tao
 

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