Metacat

09/14/2016

10:03 PM Feature #7101 (Resolved): Metacat-index picks up the changes in log4j.properteis without restarting tomcat

In the initialize method of ApplicationControl class, the code like this was added:
PropertyConfigurator.configureAn... Jing Tao

09:21 PM Feature #7101 (Resolved): Metacat-index picks up the changes in log4j.properteis without restarting tomcat

Metacat can pick up the changes in log4j.properteis without restarting tomcat. However, Metacat-index can't. This is... Jing Tao

09/13/2016

02:40 PM Feature #7096 (Resolved): Disable the feature of downloading external schemas for unregistered namespaces

Disable the downloading for both dtd and schema files. Jing Tao

02:39 PM Feature #7097 (Resolved): Provide clear messages to clients if the namespaces/formatids of the schemas of xml objects are not registered in Metacat

Add the customized message rather than the general SAX message. Jing Tao

02:38 PM Feature #7098 (Resolved): Add the feature to support the noNamespaceSchemaLocation attribute in xml objects

Implemented above plan and wrote a junit test class for testing. Jing Tao

09/12/2016

04:27 PM Bug #7100 (Resolved): Metacat Replication doesn't happen if an object is created by MN.create or CN.create

The problem is:
We use the method MNodeService.getInstance(request).create(session, guid, object, sysmeta) to create... Jing Tao

03:47 PM Bug #7100 (Resolved): Metacat Replication doesn't happen if an object is created by MN.create or CN.create

I set up the replication between my local host and mn-demo.
In a test case, if an object is created by Metacat API... Jing Tao

09/06/2016

05:09 PM Feature #7098: Add the feature to support the noNamespaceSchemaLocation attribute in xml objects

The system metadata is:
<?xml version="1.0" encoding="UTF-8"?> ... Jing Tao

05:08 PM Feature #7098: Add the feature to support the noNamespaceSchemaLocation attribute in xml objects

An example of nonamespaceschema xml document.
The uri can be:
https://www.fgdc.gov/schemas/metadata/fgdc-std-001... Jing Tao

09/01/2016

04:10 PM Feature #7098: Add the feature to support the noNamespaceSchemaLocation attribute in xml objects

In case somebody can't read the google doc. Here is the content:... Jing Tao

02:53 PM Feature #7098: Add the feature to support the noNamespaceSchemaLocation attribute in xml objects

The workflow we will use:
https://docs.google.com/document/d/1tRb1-S_gKfkuCRvYFamfnB2_pBLSus8NuYZ1fADiQ0U/edit?ts=... Jing Tao

12:35 PM Feature #7098: Add the feature to support the noNamespaceSchemaLocation attribute in xml objects

All dents are missing in above comment. I have to upload the file. Jing Tao

12:31 PM Feature #7098: Add the feature to support the noNamespaceSchemaLocation attribute in xml objects

Current workflow:
formatId = systemMetadata.getObjectFormatId(); // from Metacat API, this is null.
dtdText = ht... Jing Tao

09:01 AM Feature #7096: Disable the feature of downloading external schemas for unregistered namespaces

Wow, that's quite a shift in behavior. I guess I missed the meeting when this was discussed, but sounds like there wa... ben leinfelder

08/31/2016

05:48 PM Bug #7094: Metacat is not expanding groups in the rightsHolder field during authorization

I wrote those docs, which do explicitly say that RightsHolder is of Type.Subject, which is defined as "An identifier ... Matt Jones

03:29 PM Bug #7094: Metacat is not expanding groups in the rightsHolder field during authorization

The docs aren't explicit about this, but I can see why you'd expect any Subject to work.
http://jenkins-1.dataone.or... ben leinfelder

08/30/2016

06:32 PM Feature #7098: Add the feature to support the noNamespaceSchemaLocation attribute in xml objects

Jing -- I think at one point (and maybe currently) there was a chunk of code that used the name of the root element o... Jing Tao

02:23 PM Feature #7098: Add the feature to support the noNamespaceSchemaLocation attribute in xml objects

Jing, for documents coming in from the DataONE API, Metacat should have access to the formatId from the system metada... Matt Jones

02:17 PM Feature #7098: Add the feature to support the noNamespaceSchemaLocation attribute in xml objects

Since there is no target namespaces in the schema, in order to identify the schema, we have to use the object format ... Jing Tao

01:57 PM Feature #7098 (Resolved): Add the feature to support the noNamespaceSchemaLocation attribute in xml objects

Currently, Metacat caches the schemas with the combination keys of namespaces plus format ids. It set the property o... Jing Tao

06:31 PM Bug #7091: Metacat installation (the war file) doesn't include the FGDC schemas even though the loaddtdschema file creates an entry in the xml_catalog table for it

I changed the title of this bug. It is different to the case we tried to figure out the xml schema location. The corr... Jing Tao

05:54 PM Bug #7091: Metacat installation (the war file) doesn't include the FGDC schemas even though the loaddtdschema file creates an entry in the xml_catalog table for it

Jing -- I think at one point (and maybe currently) there was a chunk of code that used the name of the root element o... Matt Jones

04:34 PM Bug #7091: Metacat installation (the war file) doesn't include the FGDC schemas even though the loaddtdschema file creates an entry in the xml_catalog table for it

Let's go back to the original issue. We have a record on xml_catalog table:
catalog_id | entry_type | source_doctyp... Jing Tao

03:34 PM Feature #7099: Create a new admin page for Metacat admins to register schemas

This is good idea - we can avoid to create two copies of registered schemas in the registry process and the scenario ... Jing Tao

03:16 PM Feature #7099: Create a new admin page for Metacat admins to register schemas

I think this is a good idea, but I think we should go the other way -- have the copy in wepapps/metacat/schema be the... Matt Jones

02:34 PM Feature #7099: Create a new admin page for Metacat admins to register schemas

The schema locations is /tomcat-home/webapps/metacat/schema (in order to be accessible by the http), so the new insta... Jing Tao

02:27 PM Feature #7099 (New): Create a new admin page for Metacat admins to register schemas

Currently we add new schemas base on Metacat release sand occasionally add it by sql commands.
We will disable Meta... Jing Tao

01:48 PM Feature #7097 (Resolved): Provide clear messages to clients if the namespaces/formatids of the schemas of xml objects are not registered in Metacat

I believe currently the message for schema not found depends on the sax parser exception. It is not clear, we need im... Jing Tao

01:41 PM Feature #7096 (Resolved): Disable the feature of downloading external schemas for unregistered namespaces

Currently, Metacat will download the schemas during the metadata object inserting if it finds the namespaces is not ... Jing Tao

08/26/2016

04:30 PM Task #7095: Improve error message for: User tried to update an access module when they dont have ‘ALL’ permission!"

Did a globe search and found the message is in the Eml200SAXHandler and Eml201SAXHandler classes. Jing Tao

04:14 PM Task #7095 (Closed): Improve error message for: User tried to update an access module when they dont have ‘ALL’ permission!"

We get this error all the time when doing various (apparently illegal) operations:
> User tried to update an acces... Bryce Mecum

11:19 AM Bug #7094: Metacat is not expanding groups in the rightsHolder field during authorization

I'm targeting this for 2.8.0 since we have an immediate workaround on arcticdata.io. Chris Jones

10:24 AM Bug #7094 (Closed): Metacat is not expanding groups in the rightsHolder field during authorization

With a @SystemMetadata@ document like:... Chris Jones

10:04 AM Bug #7093 (New): Metacat-index is not indexing all package members correctly

Shirley pointed out that for the @urn:uuid:09fd1d96-c6b0-442d-b1cb-e2c4a2e476b6@ package on arcticdata.io:
https:/... Chris Jones

08/25/2016

12:03 PM Bug #7091: Metacat installation (the war file) doesn't include the FGDC schemas even though the loaddtdschema file creates an entry in the xml_catalog table for it

The problem is that even though we have a cached copy, we still need to modify the noNamespaceSchemaLocation attribut... Jing Tao

11:49 AM Bug #7091: Metacat installation (the war file) doesn't include the FGDC schemas even though the loaddtdschema file creates an entry in the xml_catalog table for it

There are two common locations used for FGDC schemas, both appear to be functionally equivalent and yield identical s... Dave Vieglais

11:01 AM Bug #7092 (New): Upgrade xerces and xalan lib

Currently we are using xerces and xalan 2.7 version which came out in 2005. We need to upgraded it. Jing Tao

08/24/2016

05:21 PM Bug #7091: Metacat installation (the war file) doesn't include the FGDC schemas even though the loaddtdschema file creates an entry in the xml_catalog table for it

The lib/schema directory was historically populated by first use, rather than during the build. It was only later th... Matt Jones

04:59 PM Bug #7091: Metacat installation (the war file) doesn't include the FGDC schemas even though the loaddtdschema file creates an entry in the xml_catalog table for it

To register the entry on loaddtdschema-postgres.sql exists for a long time since we can see it on Metacat 1.9.0. Howe... Jing Tao

04:12 PM Bug #7091 (New): Metacat installation (the war file) doesn't include the FGDC schemas even though the loaddtdschema file creates an entry in the xml_catalog table for it

The FGDC namespace is registered in our xml_catalog table:
27 | Schema | | | metad... Jing Tao

10:01 AM Bug #7090 (Resolved): Change a Metacat member node's synchronization value on the admin page doesn't work

The problem was in Metacat. In the d1Admin page, those properties were modified by the Metacat way - throught the pro... Jing Tao

08/23/2016

05:06 PM Bug #7090 (Resolved): Change a Metacat member node's synchronization value on the admin page doesn't work

https://redmine.dataone.org/issues/7861 Jing Tao