Metacat

Simplified the importing of images and stylesheets so that both /admin and /docs pull from /docs

Made some CSS changes to the "Go" button in the docs because it was off by a few pixels in three different browsers. Also changed the admin config landing page links to look like buttons

add documentation entries for fields that appear on the main metacat admin page.

Imported FontAwesome after Bootstrap for the FontAwesome icons. Also added a white version of the metacat logo.

prep for 2.2.0 release. include configuration value for metacatui deployment context.

Matched the admin config pages to the default metacatUI theme. Changed the background image of the docs and config pages to a big cat for some metacat branding.

bring the "Go" button down one more pixel to align with the search field.

A few style changes to the docs

Added an ID and div wrapper to the docs html for more precise CSS selectors in the metacatui ExternalView.

Added a Sphinx theme for the documentation that mirrors the new default theme for MetacatUI.

https://projects.ecoinformatics.org/ecoinfo/issues/6075

[merge from branch to keep trunk up to date with upgrade history] prep for Metacat 2.1.1 release

clean-up and flesh-out the metacat-index docs. https://projects.ecoinformatics.org/ecoinfo/issues/5884

allow running the Harvester client without a source code checkout. (D. Blankman comments)

move harvest registration page to the default skin, not the KNB skin. update docs to indicate such. (based on comments by D. Blankman)

upgrade to Metacat 2.1.0 on the trunk. This includes a new index_event table for storing indexing events that need to be reprocessed. https://projects.ecoinformatics.org/ecoinfo/issues/5944

add note about metacat.properties backup. https://projects.ecoinformatics.org/ecoinfo/issues/3085

Use 2.0.7 version number in configuration/upgrade/docs (trunk, even though we will not be releasing 2.0.7 from trunk, we want to have the upgrade scripts included here)

Add a new class ApplicationController.

(generated image commit) add ObjectPathMap reference for an indication about how we might read the bytes of a science metadata file for generating the index events.

add ObjectPathMap reference for an indication about how we might read the bytes of a science metadata file for generating the index events.

add new Stand-alone indexer component that can utilize more of the cn-index-processor code (Spring configuration) as is. Include Hazelcast reference to illustrate listener mechanism for responding to events that affect the index.

Change the name of the class SolrFieldParser to IDocumentSubprocessorFactory.

Add SolrDoc and SolrElementField class.

Add a new class SolrFieldParser and remove some classes like GenericIndex.

include class diagram for components in the cn-index-processor packaage (dataone), metacat, and solr library.

added more classes to the index diagram to reflect current state of the code - needs to be updated to include plan for implementation (e.g., DocType object is not what we want). http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5884

enable plantuml generation when building the sphinx documentation. note that you do need to have graphviz installed, but hopefully that is all.

reference the correct metacat.properties entry for "guid.ezid.enabled"

add section about behavior for deprecated Metacat API. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513

add DOI development page. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513

add solr index documentation outline. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5884

ready Metacat for 2.0.6 release (docs, db version, build files etc).

update release date to December

correct the metacat.properties help anchors.

use version 2.0.5

use correct release date (September 2012)

include qformat parameter in docs for squery
remove mention of 'username' for getLastDocid -- should only use scope param

prep for 2.0.4 release

prep for 2.0.3 release

add note about DataONE CA chain file when configuring MNs at Tier 2+

prep for 2.0.2 release by updating the version numbers.

update for 2.0.1 upgrade -- scripts, docs, readme

correct block formatting for tomcat config changes

add tomcat config options for DataONE identifiers with slashes

update MN registration screen shot and amend instructions that say a nodeId will be assigned during registration.
add section about generating SM for a new Member Node that has existing Metacat data.

include gastil's changes re: pathquery and 'delete'
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516

Add details for configuring Apache to use client certificate authentication.

correct Javadoc link http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516

apply Gastil's edits. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516

add section about configuring the metacat.properties with the paths to the server certificate and key

Fixed formatting problem in a documentation file.

add section about importing self-signed certificates into the Java keystore (now that we use strict verification on the java client side when calling replication endpoints).

a few additional notes about Metacat replication configuration.

It looks like jk.conf and workers.properties were moved in the scripts dir: update the install docs accordingly.

Fixed a minor typo in the tomcat config section.

add note about https://redmine.dataone.org/issues/2451 to the documentation

update docs to match node registration behavior: we do not assign them nodeIds at registration

Set mime type on images.

Set mime type.

Use 'a2dissite' to disable the default site (not 'a2ensite').

Updated configuration documentation in admin guide for Metacat DataONE section. Changed links in configuration utility to point at the Admin guide.

edited the configuration docs, swapped in new fully-configured screen shot
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516

marked the properties that are only editable manually in metacat.properties
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516

format xml/eml table -- added missing row delimiter
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516

some minimal editing on replication configuration -- bulk of it had been done in the Word doc before rst conversion
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516

add note to enable ssl mod

-include instructions about enabling AJP connector in Tomcat config
-use postgres 8.4
-include hint to disable default Apache site (otherwise the knb config never gets used!)

include instructions for installing Sun's Java6 JDK since it is no longer in apt-get repos

make it clear that the Apache config files are samples and may need to be modified for different servers
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516

update system requirements to be more reasonable

Fixed formatting to make fixed-width line much shorter so boxes fit on the page.

Removing obsoleted Admin Guide -- this guide is now maintained using Sphinx in docs/user/metacat -- the word document and PDF file are now obsolete.

Removed link to obsolete PDF file.

Modifications to make the build more readily find locally installed versions of
sphinx-build, and to remove the unneccary 'html' directory; output of
admindoc is now written directly into build/docs.

Added links to Javadoc. Tuned the layout a bit.

Completed first draft of Admin guide chapter on DataONE.

Continued authoring the description of DataONE in Metacat. More to come.

Initial outline for DataONE chapter.

Added OAI-PMH chapter that was contributed by Duane Costa from LTER.

Fixed formatting.

Moving Metacat Sphinx RST documentation from docs/dev to docs/user directory.

mark client/servlet API and EarthGrid API as deprecated
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5517

update documentation to reflect changes to replication (client certificate)
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516

added note about PermGen space + Geoserver

remove reference to the "custom" /etc/init.d/tomcat6 script -- this should not be used since there are now better ways to customize the tomcat start up

-use 2.0.0 version
-use tomcat6
-use /var/lib/tomcat6 as the example tomcat home directory

explicitly require java 1.6

add commons-io-2.0.jar dependency to Metacat Client API section

Update to v1.10.0 and include new GeoServer configuration instructions

merge documentation from 1.9.3 branch before adding 1.10.0 changes

add a note about not shipping with Oracle JDBC jar.
remove "8i" from the Oracle references throughout the doc so as not to indicate it is a requirement that precludes more recent versions.

Fixed some minor documentation errors regarding the Harvester.

Move all user images into the dev image directory. Remove all but the MetacatAdministratorsGuide from the user dir.

PDF version of doc

Update java version references to java 6

Fixed typo in docs.

Updated index page to hide obsolete documentation and provide a simpler
description of Metacati, as well as links to where Metacat is in use.

add ssl to yum install

fixed TOC page numbers.

removed old files.