removing old service api jar
new dataone jars
include MetacatHandlerPlugin interface so that other projects [semtools] can extend the actions handled by Metcat without editing the codebase directly. The SemtoolsPlugin is the prototype for this and can be registered using the Metacat admin interface. Note that the plugin implementation class and supporting jars must be included in the webapp in order for the request to be handled correctly (the semtools build is injecting these as part of it's build process).
include 1.9.3 upgrade script in trunk
use localhost as defaults for the properties
include bioportal widgets, at least for an example.oboe-sbc and oboe are both registered as tests.
map the eml 2.1.0 documents to be rendered by the correct (existing) stylesheet.
Merge 1.9.3 branch to the trunk.
merge 1.9.3 change to include karxml 2.1 documents in search/rendering
remove "indus" urls
adding dataone to the login org choice for the dev skin
reverting accidental cahgnes
fixing another null auth token bug
reverting accidentally committed changes
trying another build../cicore/cn-buildout/dataone-cn-metacat/usr/share/metacat/knb.war
MetacatPopulator is now working. It allows you to do a query from one metacat instance, then insert any returned docs into another metacat instance
d1client jar
tracked down streaming bug. now need to figure out a better way to fix it.
added a DataOneLogger for event notifications on the CN. The logger is called DataOneLogger and can be managed in the log4j.properties file
finished getLogRecords. Fixed some date bugs in metacat.
changed getLogRecords to use new classes for log events
new service layer jar
starting point for semtools skin. augmenting default skin with Annotation documents.not yet semantically enhanced search capabilities, but you can see a listing of both EML and Annotations on the server.
mostly done with generating systemmetadata from legacy knb docs. need to write a better test and enable this through the ResourceHandler then it will be done.
Commit the change for Madhusudan Gujral from java.net.URL url = new java.net.URL;to java.net.URL url = new java.net.URL;
Fixed bug the download link didn't work.
Add a mapping between kar xml namespace and karxml.xsl.
Add a style sheet to transform kar xml document.
added the renamed Java classes for ObjectList
Change the search query according to the karxml change.
changed the detailCode for DataOne exceptions to a string
added getSystemMetadata to ResourceHandler and changed the url format to be meta/guid. added a new servlet reponse handler in the web.xml file to handle the new urls and send them to the RestServlet.
Change the return type from kar to the namespace.
adding stax jar. if this is somewhere else, i'll remove it, but i'm unable to find it anywhere in dataone
Refactored metacat to use dataone-service-api-0.3.0 jar file, with the new JIBX generated types and serialization. Included JIBX runtime jar in metacat to handle serialization and deserialization of SystemMetadata objects. Removed the old API jar file.
Modifications to support the DataONE service API version 0.1.0. For DataONE, the get() andcreate() services are partially complete. Several more functions and checks need to be added tocreate() before it is viable. This DataONE support is not complete, and the current support breaks the MetacatRestClientTest for the time being (this client will eventually be removed).
Merge 1.9.2 changes back into the trunk
Adding commons-io jar for the IOUtils utilities for stream manipulation.
Modified readFromMetacat() to pass most exceptions up the call stack, which allows creation of new entry points for calling reads. Still need tocontinue factoring out the HTTPServletResponse that is passed in in order tomake entrypoints that are not servlet based possible. Problem now is in...
Excluding the Maven ant tasks jar from the metacat war distribution becauseit is not needed (its only used to build dataone-service at build time, andis unused at runtime), and it conflicts with jar files checked in for Springas part of the geoserver install. Also updated dataone interface...
Modified the build.xml to include a new task for building the dataoneservice api package, which generates a jar file that is put into lib. Thistask depends on maven being installed in maven.home, and depends on theDataONE service_api being checed out in a sibling directory to the build....
Adding a new property to be used as an identifier prefix by default.
Modified table structure to change identifiers table (previously unused) to represent a mapping between arbitrary string identifiers and metacat docids.More information in https://trac.dataone.org/ticket/361. Modifications toOracle schemas were made but not tested.
Modified ResourceHandler to change the GET url from /objects to /object tomatch the DataONE method name.
Merging in REST interface implementation that was created by Serhan Akin. Main change isa refactored MetaCatServlet.java class, in which all of the handle* methods were movedinto a separate MetacatHandler.java class. This allows both the standard MetaCatServlet...
Populate esa home links with skin property value
change dropdown select event to work on IE.
Fix main cross browser gui compatibility issues in sanparks tpc skin.
Remove commas from the end of lists because they break IE
remove the "optional" tip since it is not currently optional
add properties expected by the DB property service
use @class attribute for path queries rather than @name
add method name to log messages and create configured thresholds for warning messages
add parc-moderators to config.username
I've added the PARC and PISCO organizations to the delete and confirm form templates for the data registry application.
remove registry.config.username value
added a commented out line for auth.moderators for the parc system. This will get uncommented on the parc system and the existing auth.moderators will be commented out.
I've removed the value for the PARC registry.config.site property since it isn't appropriate to this skin, and causes the registry CGI to produce two organization creator elements with the same value.
hard code parc home url
Redirect data.palmyraresearch.org to parc skin
I've added the PARC organization to the login form template.
I've replaced hard-coded URL strings in the PARC skin files with their appropriate variables in JSP, TT2, and XSL.
This updates the Registry login form to handle PARC logins. I've changed the template to load the PARC header and footer if the cfg = parc.
added parc to list of available skins.
I'm adding two PARC-specific templates to the CGI templates directory. This is a temporary addition, since these templates should reside in the PARC skin. However, the NCEAS skin has templates in this location as well, and all four files will be relocated once bug #4573 has been resolved where the register and ldapweb CGIs change.
I'm adding the spatial support files for the PARC skin. At the moment, the spatial option in the skin is not being used, but these files have been modified slightly from the NCEAS skin version in branding only.
I've added in the XSL stylesheets for the PARC skin. The parc, parc-eml, parc-common and login stylesheets have been changed slightly for PARC branding.
I'm adding the settings and map JSPs. These are placeholder files since the map is not used in the PARC skin, and the settings file merely import common settings for the skin, but doesn't modify any of the interface settings.
These are the minimal images used in the PARC skin layout. The research banner comes from the research section of the PARC website.
I've added the PARC CSS file, which uses colors and images found at the PARC website.
These are the index files for the PARC skin. The html file provides the standard redirect to the JSP. The JSP has been PARC branded, and the layout has changed slightly to work with the http://www.palmyraresearch.org website layout (e.g. some navigation links have been removed).
Here are the three javascript libraries associated with the PARC skin. The only real changes are in the search.js file, where metacat searches have absolute XPaths in the search criteria. The return fields remain as relative XPaths to be consistent with the rendering code for the skin.
I'm adding the parc.cfg configuration file, which is effectively a copy of the nceas.cfg file.
This is the PARC XML configuration file. I've removed the EML beta 4-6 doctype identifiers since this skin will only deal with EML 2.1.0 documents.
I'm adding the Metacat metadata properties file for the PARC installation.
I'm adding the properties file configured for the Palmyra Atoll Research Consortium's installation.
I'm adding in the parc directory, which will contain the skin for the Palmyra Atoll Research Consortium.
special handling for RDF namespace documents (semtools project)
Start to fix I.E. gui issues
check for IE6 and show warning if they are using it
Remove seconds and minutes values from workflow scheduler and add weeks and months.
Include kar id in delete url parameters so resultset will render after delete
add id attributes for form elements (in case IE6 needed them) but it appears they are not required
add the "value" attribute for metadata tag downloads
add code block (commented out) to use in case "?column?" headers become an issue.
handle repeating "?column?" headers - somewhat naively, but consistent
Change access section in getaccesscontrol and getdocumentinfo apis to be more eml 2.1.0 compliant. Add a block access option to setaccess api.
Create workflow access pages
correct the metadata matrix for "transposed" data downloadhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=4452
order the unions by widthaddresses this bug:http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376
include at least one metadata field and then include any that are additional (_2, _3....etc)bug #4452
Add ability for doc owner to add user access to workflows.
allow user to specify the data columns included for the transpose data set (score, response, response file).decided in today's CC
Only allow workflows with kars that have user write permissions to be scheduled.
Add authorization check before scheduling a job in the workflow scheduler
submit a form into a div via ajax using either form id or form object
move worflow page sections from common into the sanparks skin files