use relative path for oa4mp_client.xml (within servlet context). https://projects.ecoinformatics.org/ecoinfo/issues/5936
use in-memory storage for myproxy. at least for now.
Add a property containing the list of the resource map namespaces.
used pk8 format private key file name
first pass at integrating CILogon/MyProxy certificates in Metacat. Configuration is specific to mn-demo-4.test.dataone.org for the time being (this will cause localhost deployments to fail webapp deployment). https://projects.ecoinformatics.org/ecoinfo/issues/5936
Add some new properties for the http solr server.
use pid, not docid as the parameter to the registry when editing/deleting objects since the vlaue is really the pid. https://projects.ecoinformatics.org/ecoinfo/issues/5932
initialize the SOLR home directory if it does not already exist.
escape reserved XML characters when constructing a pathquery from user input (&). https://projects.ecoinformatics.org/ecoinfo/issues/3017
remove xslt sort for solr search results in case someone actually specifies a sort field in the query. https://projects.ecoinformatics.org/ecoinfo/issues/3397
A property file to describe the index fields.
Use solr query instead of path query in the NCEAS skin. https://projects.ecoinformatics.org/ecoinfo/issues/5917
enable solr results rendering on the server side for the NCEAS skin (does not include UI for generating the query yet). https://projects.ecoinformatics.org/ecoinfo/issues/5917
clean-up the solr results XSLT to display more pertinent fields (many paths have been collapsed into single fields, etc). Added an abstract snippet in the search results (140 chars). https://projects.ecoinformatics.org/ecoinfo/issues/5916
rename resultset template to include "solr" so that it can co-exist with the original pathquery-based resultset template (NCEAS skin approach that has one style sheet for multiple document types)
use charset=UTF-8 for the meta tag (especially important if other international sites want to use default skin with translations)
Allow use of server-side XSLT for SOLR queries that include "wt=<qformat>". https://projects.ecoinformatics.org/ecoinfo/issues/5812
Use 2.0.7 version number in configuration/upgrade/docs (trunk, even though we will not be releasing 2.0.7 from trunk, we want to have the upgrade scripts included here)
use maven to manage most jar dependencies in Metacat.Exceptions include: LSID, Datamamager (EML),
Remove the jar file.
Add the jar file which will be used by solr.
Add 3.4 jar files.
Remove the 4.1 jar files.
Add the 3.4 jar.
Remove the 4.1 jar and use the 3.4 jar.
change the solr end point to be the localhost.
Add some new properties for the solr.
Add a solr.homeDir property.
include the objectPathMap name in the metacat.properties (used by metacat-index component) https://projects.ecoinformatics.org/ecoinfo/issues/5909
use more modern approach for web.xml: schema instead of dtd for web-app declaration. https://projects.ecoinformatics.org/ecoinfo/issues/2237
remove explicit reference to KNB when Metacat may not be deployed as the KNB node. This has bothered my for a while, too. https://projects.ecoinformatics.org/ecoinfo/issues/3736
switch to non-snapshot EZID client jar.
use new, dedicated, LTER test account for LDAP referral test.
include size and format datcite elements (optional) and use more general resourceType without formatId in them (Dataset/metadata and Dataset/data). http://schema.datacite.org/meta/kernel-2.2/doc/DataCite-MetadataKernel_v2.2.pdf
lookup the title for EML files when registering DOIs.lookup the creator from DataONE CN (if available).add EML-based test. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513
refactor using ezid-client changes that split field names and values into separate enums. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513
Correctly mint and register DOIs in teh MN API implementation. Add tests to exercise minting and creating. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513
use correct default ezid service baseURL
register DOIs with minimal DataCite metadata. still need to determine which details to include and when, but the plumbing is in place as we refine those rules. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513
disable EZID/DOI minting by default since we do not yet have a means of tracking minted DOIs and augmenting metadata for them when we actually receive the object in a subsequent create() or update() call. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5753
wordsmith the identity mapping page. Not fundamentally different, but hopefully more concise. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5814
use d1_libclient v1.2.1 (temp file creation fix)
ready Metacat for 2.0.6 release (docs, db version, build files etc).
remove older lucene library and include ORE test to make sure that change does not prevent us from generating OREs. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5874
Search and indexing with Lucene/SOLRRequires a manually configured SOLR installationNot currently used by the rest of metacat
PARC, OBFS, NRS: use only the paths that are indexed by default in metacat.properties. If deployments want to cusotmize these, they are free to do so, but we should ship skins that match the paths we index with a vanilla installation.
remove duplicate cgi-bin part in path to create account
Also add the 2.4.1 hazelcast jars to the trunk.
Add the non-snapshot jars for the D1 libraries.
include dataone.contactSubject in backup properties so it will be "remembered" during upgrades.
use jar generated from the git repo source (just in case it was different from svn). http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5755
use test doi shoulder as the default for local server, at least during testing phase. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5755
first pass at DOI minting using the EZID service in mn.generateIdentifier()http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5755
Add the latest SNAPSHOT build of the hazelcast jars built by robert at:
http://dev-testing.dataone.org/maven/com/hazelcast/hazelcast/2.4.1-SNAPSHOT/hazelcast-2.4.1-SNAPSHOT.jarhttp://dev-testing.dataone.org/maven/com/hazelcast/hazelcast-client/2.4.1-SNAPSHOT/hazelcast-client-2.4.1-SNAPSHOT.jar...
Update the hazelcast libraries based on the most recent build from the hazelcast trunk using patches that robert submitted via git pull requests.
Update the two hazelcast jars to 2.4.1-SNAPSHOT versions that Robert generated after fixing certain hazelcast build problems.
correct the metacat.properties help anchors.
use sleeker "?" icon for the admin help links
correct the "?" links in the admin pages to the docs pages that are deployed as part of metacat.
To attempt to address performance and stability WRT Hazelcast communication, we're upgrading to the 2.x series of Hazelcast. remove the 1.9.x jar files, and add the 2.4.1-SNAPSHOT jars. Modify HazelcastService to handle the minor change in the ItemListener interface (now passes ItemEvent<Identifier> as an argument)....
use ObjectFormatInfo libclient utility to look up mimeType and filename extension during get() calls. Configurable mapping file is deployed by default to /var/metacat/dataone where it can then be augmented as needed. This location is controlled in the metacat.properties file (which is injected into the DataONE Settings values during weapp intitialization)....
include log stats for total 'read' events when rendering a package.
rework simple log stats so that there is no saxon requirement (xslt 2)
remove morpho.jar -- moved needed classes into shared utilities project. (currently building form utilities trunk -- be sure to 'ant fullclean' to get the latest utilities.jar built)
Update d1_common_java and d1_libclient_java to the newest jar files. Add methods to CNodeService to throw NotImplemented exceptions for query(), listQueryEngines(), and getQueryEngineDescription() since these API calls are handled outside of metacat.
integrate ecoinformatics login with the CIlogon identity mapping flow so that a user is directed through the process with no manual navigation needed (at least in the url bar). https://redmine.dataone.org/issues/1480
shorten the systemmetadata* table names for Oracle's 30 character limit. move version to 2.0.5. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5717
ajax-ify the call to perform identity mapping (including errors)
look up CN url for portal servlet instead of hardcoding it.
prep for 2.0.4 release
remove unused "dataonelogger"
prep for 2.0.3 release
allow SM resynch to be executed any time, not just during start up.https://redmine.dataone.org/issues/3116
include JCS jar as it is a runtime dependency for d1_libclient's object caching.
remove semtools skin as a configured skin -- will need to add that if we ever get back to deploying a semtools instance.
configurable replication client timeouthttps://redmine.dataone.org/issues/3078
include new libclient jar that uses encoded pids in the resolve URLshttps://redmine.dataone.org/issues/3035
update D1 jars in preparation for 2.0.2 release. NOTE: still need libclient jar that includes ORE changes for encoding PIDs in resolve URLs
prep for 2.0.2 release by updating the version numbers.
include dataone.ore.downloaddata as a configurable property in case MNs (like LTER) want to have the process download externally-stored data files described in an EML data package.
updated foresite (snapshot) to include dateTime serialization fix.https://redmine.dataone.org/issues/3035
use 1.0.2 d1_libclient jar (built by hudson)
update for 2.0.1 upgrade -- scripts, docs, readme
remove saxon jar (XSLT 2.0 support) with plans to re-add when we understand how to make it more lenient WRT to invalid character content in source XML
move to 1.0.2 d1_libclient jar for ORE generation change (URI for aggregation)
use correct esa email list
use production CN url as the default (instead of cn-dev)
use iframe id for the login anchor since the anchor inside the iframe does not work.http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5619
remove unused replication properties (all certificate file based now)
use 1.0.1 DataONE jars
use non-snapshot D1 jars in prep for tagging/release. Still RCs
include test shoulder defaults for KNB, PISCO and LTER
use metacat.properties to specify the default checksum algorithm to use -- this way it will be easy for us to switch to whatever DataONE decrees. https://redmine.dataone.org/issues/2834
use LRU eviction policy and a small (1000) map size limit to avoid running out of memory because of a large number of system metadata objects
Set the default maximum number of database connections back to 200. After discussion, we've decided it will be better to increase the PostgreSQL limit to 300 and keep Metacat's pool size pretty big.
Change the database.maximumConnections property to 100. PostgreSQL's docs says it can handle "a few hundred", and would need to be increased from the default 100 max_connections. For DataONE optimization, we increase max_connections, however there are more processes making connections other than metacat, so I'll reduce metacat's default share.