Metacat

move DocInfo parsing into utilities project so that it can be used by Morpho as well as Metacat.
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5737

use docid, not the guid when returning the accesscontrol block

use docid (not guid) when instantiating the PermissionController. Was getting an error with DOI-ified identifier and the metacat getaccesscontrol action:
https://knb.ecoinformatics.org/knb/metacat?action=getaccesscontrol&docid=Collinge.3.28
<error>
AccessControlForSingleFile.getACL() - MCDB error when getting ACL: No guid registered for docid doi:10.5063/AA/Collinge.3.28...

remove xml_acccess.docid reference (oops)
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560

refactor Metacat access handling to be on a per-revision basis so that it more closely aligns with the DataONE approach
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560

Merged in the D1_0_6_2_BRANCH changes that include the transition from ObjectFormat calls to ObjectFormatCache calls.

include accessfileid and subtreeid when inserting xml_access values

use access control dao for setting access in EML parser. send additional xml_access info in replication request

fixed bug where permission would get set to -1 for no good reason

Format and add comments.

Handle the case of trying to insert a conflicting permission order for a document

Change access section in getaccesscontrol and getdocumentinfo apis to be more eml 2.1.0 compliant. Add a block access option to setaccess api.

change AccessControlForSingleFile to only be instantiated for one file. move ACL methods to AccessControlForSingleFile. Change format of access sections returned to EML 2.1.0.

Move access control source to it's own directory.

Move document specific utilities to DocumentUtil from MetacatUtil. This makes it easier to define a layer between the core metacat services and the rest of the code.

Create database and shared directories for database management code and shared code respectively.

Roll back replication user changes. Fix code that converts access levels to integer and to text.

Renamed MetaCatUtil to MetacatUtil

check for existing access control rows before inserting (we do not need duplicate rows specifying the same access control)

translate numeric permission to text permission when serializing.

replicate xml_access entries across servers.
see: http://bugzilla.ecoinformatics.org/show_bug.cgi?id=3464
note: still needs to be tested...but needed to be checked in for other metacat installations to be updated....

Merge 1.9 changes into Head

Fixed bug where the Permission Order was always being set to 'allowFirst'.
It was comparing against the constant AccessControlInterface.DENYFIRST with the variable name surrounded by quotes. Removed the quotes and updated comments.

Removed the release ant token from all files in 'src'.

Replacing MetaCatUtil.debugMessage or MetaCatUtil.logMetacat call with logMetacat (private Logger object) call

Replacing debugMessage with log4j methods for logging

Don't insert "acl" as accessfileid for single file. It will be null.

A class to handle assign a access rule to a single file.