move the DataONE 1.0.0-SNAPSHOT
use default fmtid if we can't find the user-supplied data mime type in our list
including newer d1 libclient that uses Foresite (and Jena) to construct/parse ORE resource maps for DataONE
cleaned up to use for populating a DataONE MN using the D1 api. Retrieves packages from a Metacat and generates system metadata for them before calling MN.create() for both data and metadata.NOTE: you need a client certificate that the target server accepts (either DataONE-generated for testing or a CILogon one for more official use). I was only able to get the former certificate type to work with our existing MN servers
changes for schema update (d1_common)
Update MetacatPopulator to use the DataONE 0.6.4 schema and types.
use new "v1" types from DataONE
-handle NotFound object format when generating system metadata-improve EML DML for null entity/attribute elements
placeholder for setting up certificate manager
remove AuthToken (use session). Remove login() call. Use AccessPolicu object to set public read permission
Updated MetacatPopulator to now use ObjectFormatCache.getInstance(). Note: problems remain with the authentication API changes - calls to mn.login(), etc. need to be addressed.
use Data Manager Library to parse EML when needed in DataONE classes.(augmented DML to parse data format elements in EML to estimate MIME type)https://redmine.dataone.org/issues/1634
Merged in the D1_0_6_2_BRANCH changes that include the transition from ObjectFormat calls to ObjectFormatCache calls.
Modified Metacat to build against the D1_SCHEMA_0_6_1 branch of the dataone schemas by incorporating the 0.6.1-SNAPSHOT version of d1_common and d1_libclient libraries, and refactoring Metacat code references to the d1 schema changed types.
In order to sync up with DataONE 0.6.1 changes, I'm backing out ObjectFormatService changes temporarily in Metacat. Most functionality will be rolled back in using the DataONE 0.6.2 tag, but some methods in ObjectFormatService (such as getListFromDisk()) will be moved into d1_libclient_java.
Changes in the DataONE ObjectFormat class deprecate the convert() method, and we're now using Metacat's ObjectFormatService to look up object format attributes. The following changes replace ObjectFormat.convert() with ObjectFormatService.getFormat() in several classes....
Add in correct node references in system metadata.
some new code for debugging mmp
updated the populator
Modified MetacatPopulator to deal with change in D1Client static methods.
use detected document encoding or Metacat's default encoding (UTF-8)
fixed bug 818
updated the metacatpopulator to use the d1 eml parser to create system metadata in a smarter fashion.
updated for new dataone jars
fixed identifier manager problem with getting guid for systememtadaa doc
added functionality to set access permissions to system metadata the same as the document that it describes
MetacatPopulator is now working. It allows you to do a query from one metacat instance, then insert any returned docs into another metacat instance
tracked down streaming bug. now need to figure out a better way to fix it.