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# Date Author Comment
9410 11/17/2015 03:41 PM ben leinfelder

merge from 2.5 branch: use subquery to do paging before joining to identifier table. https://redmine.dataone.org/issues/7491

9408 11/16/2015 04:51 PM Jing Tao

Add more statement to debug the query performance.

9391 11/03/2015 02:36 PM ben leinfelder

Use conditional method for retrieving server URL (http vs https). When metacat is configured to force SSL communication we get the https url, otherwise we get http. this allows us to use the DBTransform on localhosts that are not using SSL.

9389 11/03/2015 11:27 AM Jing Tao

Fixed a bug that the publish method should throw an io exception.

9387 11/02/2015 04:44 PM Lauren Walker

Move the editScienceMetadata method to the MNodeService class - only update packageId in EML on publish()

9385 10/29/2015 06:59 PM Jing Tao

Fixed a bug in the condition check for the archive field in the updateSystemMetadata method.

9384 10/29/2015 04:00 PM Jing Tao

The archived field can't be reset to false if it is true in the systemMetadataChanged method.

9383 10/29/2015 03:56 PM Jing Tao

Doesn't allow to reset the archived field to be false if the field is true in the updateSystemMetadata method.

9382 10/28/2015 11:14 AM Jing Tao

In the systemMetadataChanged method, we will update system metadata when the local serial version is less than or equals the comming one.

9380 10/27/2015 03:42 PM rnahf

refs #7453: modified the metacatLog message from mn.synchronizationFailed to include the syncFailed.message field. Also increased the log level to WARN.

9376 10/22/2015 12:15 PM Jing Tao

Remove the method editScienceMetadata from the update method. This method will add a packageId attribute into the eml document. Lauren will add the method to the publish method.

9375 10/21/2015 04:52 PM Jing Tao

In the systemMetadataChanged method, the object will be archived if the new archive value is true and old value is false.
The log event is recorded in the systemMetadataChanged method as well.

9374 10/21/2015 03:31 PM Jing Tao

Make the isAuthoritativeNode throw exception if some value is null.

9373 10/20/2015 04:11 PM Jing Tao

In the updateSystemMetadata method, we avoid to log the event twice for archive=true.

9371 10/20/2015 02:34 PM Jing Tao

In the setReplicationStatus method, it only notified the replicas when the status is completed. Now we added the status - failed and invalid.

9370 10/20/2015 11:16 AM ben leinfelder

use idFilter for v2 getLogRecords() to match v2 API definition.

9367 10/14/2015 01:15 PM rnahf

refs #7419: refactored CNodeService implementations to not throw IdentifierNotUnique for hasReservation.

9363 10/09/2015 12:26 PM Jing Tao

In the reindex method, the error message will be sent back.

9362 10/02/2015 04:36 PM Jing Tao

In the create method, the modification date is reset only on the objects whose authoritative member node is v1.

9361 10/02/2015 04:16 PM Jing Tao

In the deleteReplicationMetadata method, the modification date of the system metadata will not be reset.

9360 10/02/2015 04:09 PM Jing Tao

Modify the text of an exception.

9359 10/02/2015 03:53 PM Jing Tao

Add contrains for the v1/v2.registerSystemMetadata method. See https://redmine.dataone.org/issues/7380

9357 10/02/2015 10:20 AM Jing Tao

For the v1/v2 setObsoletedBy and setRightsHolder method, they only apply the objects whose authoriative member node is v1.

9356 10/02/2015 08:55 AM Jing Tao

Add the constrains that v1/v2.archive only applies the object whose authoritative node is a v1 node.

9354 10/01/2015 05:33 PM Jing Tao

Add the case the mn.updateSystemMetadata and cn.updateSystemMetadata will call the archive method internally.

9353 10/01/2015 03:01 PM Jing Tao

Refactory the mn.archive and cn.archive method so the mn.update and cn.update can reuse them.

9352 10/01/2015 02:23 PM Lauren Walker

Update the packageId attribute in EML documents on update. Never display the local docid in the rendered EML.

9350 10/01/2015 12:30 PM Jing Tao

In the archive method, add the lock.

9349 10/01/2015 10:39 AM ben leinfelder

check for auth before doing asynch call to MN dirtySysMeta implementation

9347 09/30/2015 05:01 PM Jing Tao

Only applies the setAccessPolicy method to objects whose authoritative mn is v1.

9345 09/30/2015 04:38 PM Jing Tao

Add a comment to specify that the setReplicationPolicy only applys to v1.

9343 09/30/2015 04:07 PM Jing Tao

The setReplicationPolicy method only apply to the pids whose authoritative member node has v2 MNStorage.

9342 09/30/2015 11:55 AM Jing Tao

Add the code to check if the serialVersion object is null before it is saved to the db.

9340 09/28/2015 01:47 PM Jing Tao

Add a flag on the systemMetadataChanged method. If it is true, the authoritative member node will only accepts the serial version and replica list; the replica node accepts everything. If it is false, it will accept everything.

9339 09/28/2015 10:01 AM Jing Tao

Add a note for the updateSystemMetadata method.

9337 09/25/2015 02:55 PM Jing Tao

CN.updateSystemMetadata will ignore the serial version and replica list in the comming system metadata from the mn.

9335 09/24/2015 04:58 PM Jing Tao

Add the code to check the date of system metadata modification match in MN.updateSystemMetadata only. CN.updateSystemMetadata doesn't check.

9333 09/24/2015 01:59 PM ben leinfelder

use request query string first when handling MN.query() method. https://redmine.dataone.org/issues/7384

9329 09/23/2015 03:35 PM Jing Tao

Commented out the code to check serial version on the updateSystemMetadata method.

9328 09/23/2015 12:00 PM Jing Tao

Add more debug messages for the isCNAdmin method.

9327 09/21/2015 04:37 PM Jing Tao

Put a the systemMetadataChanged method into a queue, so it will not hold the block.

9326 09/16/2015 12:57 PM Chris Jones

Change updateReplicationMetadata() and setReplicationStatus() to no longer set the dateSysmetaModified date per our discussion on 9/16/15.

9325 09/16/2015 10:04 AM Jing Tao

Add more debug statement for the updateSystemMetadata method.

9324 09/15/2015 04:16 PM Jing Tao

In the getLog method, if the event is null, we will set it unknown.

9323 09/15/2015 03:51 PM Jing Tao

If the event string is null, we will skip this log in the getLog method.

9322 09/15/2015 03:15 PM Jing Tao

Add the code to check if we can't get the current system metadata from the node in the mn.systemMetadataChanged method.
If we can't find it, an InvalidRequest will be thrown.

9321 09/10/2015 09:47 AM Jing Tao

Fixed a bug that a client can set the original member node to be null.

9320 09/09/2015 02:09 PM Jing Tao

Change some exceptions from the InvalidSystem to the InvalidRequest in the updateSystemMetadata method.

9319 09/09/2015 12:40 PM ben leinfelder

rollback: set session.subject so libclient can look up certificate. Seems like the default behavior may have changed?

9318 09/09/2015 12:01 PM ben leinfelder

set session.subject so libclient can look up certificate. Seems like the default behavior may have changed?

9317 09/08/2015 03:22 PM Jing Tao

use the TypeFactory to convert the Log and ObjectFormatList objects from the v2 to v1.

9315 09/04/2015 03:05 PM Jing Tao

In the setReplicaStatus method, if the coming status is the same one of the existing one, the system metadata will not be updated.

9314 09/02/2015 11:22 AM Jing Tao

Fixed some incorrect exceptions in the getReplica method.

9309 08/28/2015 09:30 AM Jing Tao

In the isAdminAuthorized method, the faiure of the isNodeAdmin method will not interrupt the next check - if it is a cn.

9308 08/26/2015 04:18 PM Jing Tao

Fixed a bug that when the count is 0, the total is incorrect in the querySystemMetadata method.

9307 08/25/2015 04:44 PM Jing Tao

Fixed a bug the total was not correct in the querySystemMetadata method.

9305 08/25/2015 03:25 PM Jing Tao

Use the application/bagit-097 to replace application/bagit.

9304 08/25/2015 02:50 PM Jing Tao

Use the TypeFactory to replace the TypeMarshaller according to the change in the d1_common_java.

9301 08/19/2015 11:41 AM Jing Tao

Use the key word "packages" to replace the "package".

9300 08/17/2015 04:52 PM Jing Tao

Decode the string of the uri after we break the uri into parts base on the "/".

9299 08/17/2015 04:25 PM Jing Tao

Decode the string of the uri after we break the uri into parts base on the "/".

9298 08/17/2015 03:40 PM Jing Tao

Decode the string of the uri after we break the uri into parts base on the "/".

9297 08/17/2015 02:52 PM Jing Tao

Decode the string of the uri after we break the uri into parts base on the "/".

9295 08/14/2015 04:06 PM Jing Tao

Use the D1NodeVersionChecker to determine the mn's version rather than using ping.

9294 08/14/2015 04:04 PM Jing Tao

When the cn.notifyReplicaNodes method, if the target MN source code is a v2 mn, we will use v2 api; if it is a v1 node, we will use v1 api.

9291 08/12/2015 04:27 PM Jing Tao

A new class is used to get the version of service for a given node.

9290 08/10/2015 04:57 PM Jing Tao

Only support the application/bagit format in the getPackage method.

9288 08/07/2015 08:02 AM Jing Tao

Use the status of mn.ping to guess the version of the source node in the replicate method.

9287 08/06/2015 05:23 PM Jing Tao

In the replicate method, it will use the v1.getReplica method if the source node only supports v1 replication service.

9284 08/06/2015 02:34 PM Jing Tao

The code was added to compare the serial version in the updateSystemMetadata method. If the serial version in the new system metadata is less than or equals previous version, an exception will be thrown.

9283 08/06/2015 01:57 PM Jing Tao

Increase the version number after updating the existing object's system metadata in the update method.

9280 08/05/2015 04:37 PM Jing Tao

Fixed a possible null exception in the updateSystemmetadata method.

9277 08/05/2015 04:19 PM Jing Tao

In the MN.updateSystemMetadata method, when we set the obsoletedBy and obsoletes method, we will check if those values already exist in other chains.

9275 08/04/2015 03:53 PM Jing Tao

Add the identifier in the message of the exception when a client tries to reset the obsoletes or obsoletedBy fields.

9274 08/04/2015 02:58 PM Jing Tao

Check the obosoletedBy and Obsoletes only can be set once.

9272 07/30/2015 05:32 PM Jing Tao

The method of setReplicationstatus can be called by CNs and MNs.

9271 07/30/2015 11:08 AM ben leinfelder

merge from V2 impl: check for optional "failure" param instead of throwing exception when it is missing (often is). https://redmine.dataone.org/issues/7283

9269 07/29/2015 02:42 PM ben leinfelder

check for optional "failure" param instead of throwing exception when it is missing (often is). https://redmine.dataone.org/issues/7283

9268 07/29/2015 02:13 PM Jing Tao

Fixed a possible null pointer exception bug. https://redmine.dataone.org/issues/7280

9265 07/27/2015 05:15 PM Jing Tao

Only CNs can call those methods:
CNCore.registerSystemMetadata()
CNCore,updateSystemMetadata()
CNReplication.setReplicationStatus()
CNReplication.updateReplicationMetadata()
CNReplication.deleteReplicationMetadata()

9263 07/27/2015 04:20 PM Jing Tao

On mn.update and mn.updateSystemMetadata, those clients are allowed:
1. CNs.
2. Clients with appropriate permission calling the method on the authoritative nodes.

9258 07/21/2015 04:22 PM Jing Tao

When compare the dateUploaded, now we use sysmetadata.getDateUploaded().getTime(). It used systemmetadata.getDateUploaded() (Date objects) to compare.

9257 07/21/2015 01:32 PM Jing Tao

Add code to catch the BaseException in the updateSystemMetadata method.

9256 07/20/2015 03:21 PM Jing Tao

Add the code to handle if the cn is null.

9253 07/16/2015 02:51 PM Jing Tao

Handle multiple versions (v1 and v2) of a service in getCapacity method.

9249 07/15/2015 11:07 AM Jing Tao

Use the NodeReference object to replace the replicaStatus to restrict the listObjects method.

9248 07/15/2015 10:44 AM ben leinfelder

[re]register DOI when system metadata is updated (typically access policy). https://projects.ecoinformatics.org/ecoinfo/issues/6796

9247 07/14/2015 04:56 PM Jing Tao

Change the signature of listObject method - remove replicaStatus and add nodeId.

9246 07/14/2015 04:42 PM Jing Tao

Add the code to call cn.synchroinize at the method of updateSystemMetadata.

9245 07/13/2015 04:35 PM Jing Tao

Throw an exception if the request doesn't specify the name of the theme in the view method.

9244 07/13/2015 03:28 PM ben leinfelder

use objectFormat.extension in cases where we need to construct a filename for download. https://redmine.dataone.org/issues/3312

9237 07/09/2015 02:09 PM ben leinfelder

use v1 and v2 xsl as appropriate for rendering d1 types (object format list, mostly)

9235 07/08/2015 05:03 PM ben leinfelder

use MediaType from v2.SystemMetadata and v2.ObjectFormat to better determine mime-type, charset and filename for the get() method. https://redmine.dataone.org/issues/3309

9231 07/08/2015 11:53 AM Jing Tao

Fixed a bug that two columns were missing in the sql command.

9230 07/07/2015 04:35 PM Jing Tao

Add the code to read/write the new system metadata fields - file name, media type and media type properties into the db tables.

9229 07/06/2015 04:22 PM Jing Tao

Add code to update smmediatypeproperties table.

9220 05/28/2015 03:11 PM Jing Tao

Throw an exception if the saving system metadata fails.

9219 05/28/2015 01:19 PM Jing Tao

Add the code to roll back the saved system metadata if the object can't be saved.

9206 05/11/2015 10:43 PM Jing Tao

Don't use ssClient as a class field. Now it is a local variable. This fixed an issue that two statements using the client caused the exception - java.net.SocketTimeoutException: Read timed out.

9204 05/11/2015 02:09 PM rnahf

refs: #7092. found another unclosed inputStream, this time in ReplicationService.handleForceReplicationDataFileRequest(...).