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# Date Author Comment
2067 03/26/2004 03:25 PM Matt Jones

Removed the "getdataguide" action as it was always experimental and is no longer used in metacat or morpho.

2066 03/26/2004 02:47 PM Matt Jones

removed the 3 versions of printPackageSQL which are no longer used by metacat. This eliminates some dependency on xml_index.

2063 03/26/2004 02:36 PM Duane Costa

Implement Harvester Registration Servlet

2062 03/26/2004 02:35 PM Duane Costa

Additional scheduling logic

2061 03/25/2004 12:57 PM Duane Costa

Changes to Harvester properties

2060 03/25/2004 12:56 PM Duane Costa

Changes to log entries

2058 03/23/2004 10:26 AM sgarg

Made changes in these three files so that getPrincipal returns back more details about users and groups. Users now contain userDN, user Name and user Email. Groups now contain Group name and Group description. So some function calls which returned single string array earlier now returns multiple string arrays. AuthSession.java called one of these functions - so accordingly changes were made to fix that part of the code.

2057 03/22/2004 10:37 AM sgarg

Fixed a bug which doesn't occur everytime. The bug occurs when lastid in (cfg).lastid is not unique. i.e. there is already a document in the server which has same docid. The earlier algorithm was:

while(not unique){
get accession number;
update accession number written in document; (BUG)...

2056 03/22/2004 08:43 AM sgarg

Added extra parameters (cfg & docid) to be passed on to generic response screen.

2049 03/16/2004 06:57 PM sgarg

made changes so that organization name for the site or project is entered before
any other creater.

2045 03/15/2004 02:08 PM Jing Tao

Fixed the bug for sessionid storing, revision couldn't be zero and Ldap DN is case sensitive.

2043 03/09/2004 06:18 PM sgarg

Replaced Hash table with Vector of Vector datastructure in getting <param> from Query. This was done so that the results are represented in same order as they appeared in the document.

2042 03/09/2004 03:59 PM sgarg

fixed a bug in reloading of kewords from an eml file for edit-datapackage form.

2039 03/08/2004 06:07 PM Jing Tao

Fixed bug that version could not be zero in replication.

2038 03/06/2004 11:51 PM Matt Jones

Minor changes to allow the registry to work in the knb skin, mainly in
how to treat the 'site' field. Now it is a free-text organization
field in the KNB skin. Need to test, install this on ecoinfo and link it
into the KNB web pages.

2037 02/27/2004 03:21 PM sgarg

Added subroutine for replacing characters that might create problem in HTML.
Specifically written for "being used in any text field. This create a
problem in confirmData template, when you specify input name value pair with value
having a " in it.

2036 02/27/2004 12:49 PM Duane Costa

Additional Harvester development

2032 02/20/2004 04:45 PM sgarg

Made changes so that & and other characters dont mess up the url that is passed to metacat.

2031 02/20/2004 02:42 PM Duane Costa

Additional development of Harvester implementation

2029 02/11/2004 01:08 PM sgarg

Mixed a bug reported by Rick and Dan. The form inserted a organizationName tag with no value. This happened only in NCEAS as the tag was included from the drop down site list which doesnot exsist in NCEAS version. Hence, a empty tag was inserted in the eml document.

2028 02/10/2004 06:13 PM sgarg

Bug 1301 - changes made for a repeatable add keyword button

2024 02/10/2004 09:37 AM sgarg

Made changes to fix bug# 1326. The templateVar are now passed on to the responseTemplate also in case of error - so that it can show a link which will send all the values back to register-dataset.

2022 02/09/2004 03:10 PM Duane Costa

Harvester source files

2015 02/05/2004 04:36 PM sgarg

Did editing to support changes mentioned in bug 1295

2005 01/12/2004 06:37 PM Matt Jones

Fixed hardcoded admin account so that it works with more than just OBFS
Registry.

2003 01/12/2004 05:44 PM Matt Jones

Fixed registry bug involving a string comparison (used numeric
equality instead of string equality).

2000 01/08/2004 06:57 PM Matt Jones

Removed unneeded Net::LDAP dependency. Now all authentication occurs
indirectly through Metacat.

1999 01/08/2004 06:48 PM Matt Jones

Added skin for the UCNRS data registry based on earlier work. Minor
modifications to the templates to accomodate this. Fixed a validation
bug in the register-dataset.cgi, and removed an unnecessary Net::LDAP
login as well because the authentication is handled by metacat.

1998 01/08/2004 09:21 AM Matt Jones

Restoring AuthLdap to previous search filter. Determined that the problem was
a missing o: attribute in the UCNRS LDAP directory. Adding it in makes the old
method work. The change I had made caused some confusion about authentication
because using just uid for a filter caused too many return dn's, and it was just...

1997 01/08/2004 08:31 AM Matt Jones

Fixed validation check for samplingDescription.

1993 01/07/2004 03:13 PM Matt Jones

Changes to re-enable the nceas admindb access for the production install.

1992 01/07/2004 11:07 AM Matt Jones

Removed some debugging test code that isn't needed.

1989 01/06/2004 06:41 PM Matt Jones

Added studyExtent and samplingDescription fields to the registry to accomodate
Sandy's request for a temporalDescription field. This is a little more than
she wanted, but it was needed to satisfy EML minimum requirements.

1988 01/06/2004 06:18 PM Matt Jones

Modified LDAP authentication to support a lookup for the NRS system. If
the auth on the provided string fails as a DN, try to look up a new
DN based on the UID. If we get a match, use that DN for auth and see
if that works. This allows us to use a referral within the...

1985 12/29/2003 01:57 PM Matt Jones

Added taxonomic coverage and authority fields, and fixed a bug in reentry
with the methods fields. Now we are collecting information on all of the
additional fields Sandy requested except for a general temporal description,
which doesn't fit neatly in EML. Will need to consider how to accomodate...

1984 12/23/2003 06:22 PM Matt Jones

Added the ability to describe taxonomicCoverage to the registry. This
allows an arbitrary number of species or other taxa to be listed, and the
editing form can dynamically grow through a simple javascript approach
(also used in Methods). Need to test thoroughly, and need to test on...

1983 12/23/2003 12:15 PM Matt Jones

Added geographic description to the fields of data collected, as it is
a required field and was being improperly defaulted to an empty string in the
XML document. This is a new field for all registries.

1982 12/23/2003 11:27 AM Matt Jones

Modifications to add "Methods" collection to the data registry, and to
make the forms HTML 4.0.1 valid (in an attempt to figure out some of
the rendering and layout oddities I'm seeing).

1980 12/19/2003 04:49 PM Matt Jones

New formatting and text for the NCEAS data registry.

1979 12/19/2003 04:12 PM Matt Jones

Further changes to the registry scripts to support the NCEAS registry
with access to the project list fromthe admindb. Also, fixed a bug with
the script where creators were getting duplicated in the editing process
accidentally.

1977 12/18/2003 05:08 PM Matt Jones

Modifications that allow working group entries to be put in as creators, and
a whole bunch of re-formatting for horribly formatted code that I need to
read to finish this thing up.

1975 12/18/2003 01:45 AM Matt Jones

Updated registry further for NCEAS-specific needs. Confirm data template
now handles new wg field. Still need to write WG metadata into EML document.

1974 12/17/2003 05:37 PM Matt Jones

Additional work on the NCEAS/AdminDB integration. Working Groups now
presented as a dropdown box for multiple selection. Need to write the
info to the XML file now and handle it in confirmation template.

1973 12/17/2003 02:58 PM Matt Jones

Preliminary changes to support the NCEAS data registry connection to the
AdminDB to retrieve project lists.

1956 12/10/2003 01:15 AM Matt Jones

Enabled stylesheet parameters to be passed through metacat even when the
'query' function is called. Previously, query would interpret all
parameters except a few hardcoded ones to be pathexpressions that should be
built into a squery. Now, metacat.properties contains a new configuration...

1955 12/09/2003 11:42 PM Matt Jones

Updates that allow registry script to update the lastid field more efficiently
by calling the metacat 'getlastdocid' function for a given scope. Also some
debugging support added, and a bug where the error message was inproperly
saved across calls to metacat, resulting in spurious error messages.

1953 12/05/2003 07:01 PM Matt Jones

Added new function "getLastId" to the Metacat.pm perl Metacat client. Returns
the hisghest docid in use in a given scope.

1951 12/05/2003 01:21 PM Matt Jones

Moved the metacat.properties file from the jar file to now be located in
the tomcat context directory in WEB-INF. Now the metacat configuration is
editable in place. This change depends on a new Options.java class in the
utilities module, so be sure you do a "clean" build in metacat so that you...

1949 12/04/2003 09:49 AM Duane Costa

Improvements to Harvester single file upload servlets

1936 11/24/2003 10:44 AM Matt Jones

Remove email notification from registry script.

1929 11/21/2003 03:05 PM brooke

This is the merge from the branch WEB_UI_REDESIGN_BRANCH back into the head.
The only files that have been removed are those in lib/style/eml2; other files
that have been cvs removed (only from lib/ and lib/style) have been re-added
elsewhere (i.e. moved from one directory to another)....

1925 11/21/2003 11:40 AM Duane Costa

Remove unneeded file Upload999.java

1906 11/18/2003 04:51 PM Jing Tao

If the sessionid is null and user will be treated as public.

1903 11/18/2003 11:08 AM Jing Tao

Get rid of doctype declare in transfer.

1896 11/17/2003 03:17 PM Jing Tao

Set system id for transforming.

1895 11/17/2003 03:17 PM Jing Tao

Modified a method and can be reused.

1849 11/07/2003 06:40 PM Jing Tao

If db pool size is maxium and no connection is free. The checkout will be wait.

1841 10/31/2003 06:02 PM Jing Tao

Add a checking for xml_nodes insert finished, then start build index table.

1839 10/21/2003 01:08 PM Jing Tao

Remove UPPER function for >, < operator.

1838 10/20/2003 04:05 PM Jing Tao

Add a new search mode not-contains.

1837 10/18/2003 04:36 PM Jing Tao

Modified a debug Message.

1834 10/08/2003 05:39 PM Jing Tao

Add a new method to find document from queryspecification.

1833 10/03/2003 06:08 PM Jing Tao

Revise code so it can be called directly.

1832 10/02/2003 05:17 PM Jing Tao

Revied the class.

1831 10/02/2003 05:16 PM Jing Tao

New class will be used in metacat ecogrid impl.

1830 09/29/2003 01:04 AM skrish
  • empty log message ***
1828 09/22/2003 01:14 PM Matt Jones

Updated more tests on session reuse. Made the http calls set the sessionid
explicitly rather than relying on cookies being passed around statically.
Still need to modify HttpMessage to get rid of the static cookie.

1827 09/19/2003 05:05 PM Matt Jones

Renamed the upgrade sql files to more understandable names, updated the
build file to include some new targets for running these files, and
updated the installation docs to clarify which upgrade scripts need to
be run and when.

1826 09/19/2003 05:01 PM Matt Jones

New versions of the Metacat client API that allow access to the sessionId
so that a session can be reused over several different instances.

1825 09/17/2003 06:32 PM Matt Jones

Fixed the sessionId handling code to now properly return the sessionId
in the login response message. Updated junit tests to test this issue.

1822 09/17/2003 12:42 PM Matt Jones

Modified metacat to now provide the session identifier in the response
xml message when a login is called. This has not been fully tested.
I removed the HttpMessage class from metacat in favor of using the version
of that class that is found in the utilities module. This may cause some...

1818 09/04/2003 05:57 PM Jing Tao

Fixed a bug for importing package

1816 09/04/2003 03:22 PM Jing Tao

Fixed the bug that if path query without xml declaration will cause a non well-formed result doc.

1813 09/04/2003 01:11 PM Jing Tao

A sample application program to call metacat string service.

1810 09/03/2003 05:18 PM Jing Tao

Fixed some bugs in this file.

1809 09/02/2003 05:01 PM Jing Tao

Implementation for the interface.

1808 09/02/2003 05:00 PM Jing Tao

Add a new client interface with string type for web service.

1806 08/20/2003 01:40 PM Jing Tao

Drop xml_accesssubtree table before the xml_document table.

1804 08/14/2003 04:41 PM Jing Tao

in toxml method, add new code to handle dtd.

1803 08/14/2003 04:41 PM Jing Tao

Add a new constructor to hanlde DTD node.

1802 08/14/2003 04:40 PM Jing Tao

Add code to handle public id and system id.

1798 08/12/2003 06:04 PM Jing Tao

Implement logout method.

1797 08/12/2003 06:04 PM Jing Tao

Add a logout method.

1795 08/12/2003 12:35 PM Matt Jones

Implemented the update and delete methods in the interface, along with tests.

1789 08/12/2003 12:24 AM Matt Jones

Implemented the "insert()" method and wrote a test to test it. The new test
depends on the property "newdocid" be set to something unique in the build.xml
file so that the insert will work properly. Probably need to fix this to be
some kind of autoincrement counter or random number so that it can be run...

1788 08/11/2003 11:28 PM Matt Jones

Refactored to use IOUtil routines. Reformatted for within-file consistency.

1786 08/11/2003 06:30 PM Jing Tao

Implement query method.

1785 08/11/2003 06:29 PM Jing Tao

Add metacatinaccessible exception for query.

1784 08/11/2003 03:24 PM Matt Jones

Implemented the 'read' API call. Some more to go...

1783 08/11/2003 12:19 PM Matt Jones

Wrote the login() function, the first of the series of API calls for
the metacat client to be implemented. Also wrote a test class to
test the API functionality.

1782 08/10/2003 02:26 PM Jing Tao

If uploading failed, the inline data will be deleted either.

1781 08/10/2003 02:26 PM Jing Tao

If xml document uploading failed, the inline data file will be deleted either.

1780 08/08/2003 04:16 PM Matt Jones

Added a new subpackage (edu.ucsb.nceas.metacat.client) which is a client
access library for the metacat. There is an interface (Metacat.java) that
provides simple access methods for the main metacat functions. This is to
support clients like Morpho and others that want to programatically access...

1773 07/31/2003 09:56 PM Jing Tao

JAVA 1.3 doesn't support this FileWriter(File fileName, boolean append). But 1.4 does.
Change to FileWriter(String fileName, boolean append). Both 1.3 and 1.4 support.

1768 07/30/2003 02:03 PM Jing Tao

Fixed bug in replication if doctype is null.

1767 07/30/2003 10:50 AM Jing Tao

Fixed a bug that replication didn't do inline data.

1766 07/30/2003 09:04 AM Jing Tao

Change a array size from 4*10(testing) to 4*1024.

1764 07/29/2003 09:08 AM Jing Tao

Using reader replacing string to read inline data.

1763 07/29/2003 09:07 AM Jing Tao

Using reader to replace string to read inline data.

1762 07/28/2003 05:51 PM Jing Tao

Change the way to handle inline data.