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# Date Author Comment
5023 08/12/2009 02:12 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem: * Remove import of deleted class

5022 08/12/2009 01:58 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem: * Add documentation files to the 'docs/dev/oaipmh' directory. * Delete two obsolete files. * Modify class description comment in MetacatRecordFactory.java

5021 08/10/2009 01:45 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair. * Terminate harvest if login failed. * Add runHarvester.sh shell script

5020 08/07/2009 02:34 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair.

5018 08/07/2009 10:35 AM daigle

Updated comments to more accurately reflect the API

5016 08/06/2009 10:59 AM daigle

Fix references to db classes that were moved and refactoring missed.

5015 08/04/2009 02:32 PM daigle

Create database and shared directories for database management code and shared code respectively.

5014 08/04/2009 02:30 PM daigle

Create replication directory. Move replication code there. Use log4j for replication logging (rollingfileappender). Beef up replication logging and error control.

5013 07/31/2009 04:47 PM daigle

Add the ability to delete a scheduled workflow (move status to deleted in database)

5012 07/30/2009 04:58 PM daigle

Added end time to workflow scheduler.

5011 07/30/2009 01:27 PM daigle

Propagate the kar id throughout the configuration screens.

5010 07/30/2009 01:26 PM daigle

Populate admin login user dropdown with configured admins

5005 07/30/2009 10:20 AM daigle

Input date formatting changes

5004 07/30/2009 10:19 AM daigle

Use context url instead of server IP. Server IP breaks if the server does not have an externally facing IP (behind a proxy server)

4999 07/27/2009 02:47 PM Duane Costa

Implement fix for Bug #4245: Harvester command line scripts don't execute.

4996 07/27/2009 12:50 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
Check to see whether metacat database has changed since last refresh date, and if it has, refresh catalog objects in memory.

4990 07/24/2009 11:49 AM Jing Tao

Add a new line for NameVirtualHost. Otherwise, the host will fail.

4986 07/20/2009 06:42 AM daigle

Fix issue where every scheduled job gets the same parameters.

4984 07/19/2009 11:18 PM daigle

Created new AuthStub class to always authenticate.

4981 07/11/2009 07:16 AM daigle

Implement stop method in services. Stop all services when shutting down metacat. This primarily keeps scheduler from hanging with open threads.

4979 07/09/2009 11:14 AM daigle

Catch exception that was leaving shape files open. Roll back transaction in this case.

4978 07/09/2009 11:13 AM daigle

Catch exception when schema exists in db but not on disk. Try to get the schema before throwing exception

4977 07/09/2009 11:12 AM daigle

remove this file. This is now handled in db update scripts.

4975 07/07/2009 10:20 AM daigle

Add upgrade scripts for 1.9.2 (scheduler tables)

4973 07/06/2009 04:55 PM daigle

Handle extracting a docid from a urn (lsid) during a read action

4971 07/06/2009 04:53 PM daigle

Beef up comments

4970 07/01/2009 10:38 AM daigle

kepler workflow execution engine client classes

4967 07/01/2009 10:29 AM daigle

Workflow scheduler and archiving fixes for TPC workflow engine

4959 06/18/2009 10:24 AM daigle

Added generic scheduler and workflow scheduling functionality.

4952 06/12/2009 04:47 PM daigle

Add scheduler and workflow schedule functionality

4951 06/12/2009 04:41 PM daigle

Add scheduler and workflow schedule functionality

4950 06/12/2009 04:39 PM daigle

Add archival read funtionality (jar/kar/war files)

4946 05/29/2009 02:13 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
1. Refactor the 'eml' metadataPrefix into a distinct metadataPrefix value (and corresponding crosswalk class) for each EML version:
eml-2.0.0, eml-2.0.1, eml-2.1.0. (In recent VTC discussion, we decided not to add support for the older 'beta' versions of EML 2.0.0.)...

4945 05/28/2009 11:13 AM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
1. When building the Metacat OAI-PMH catalog, modify the database query to search only for documents with public read access.
2. Change syntax used for identifiers in the repository to LSID format instead of using a URL to a specific repository....

4944 05/20/2009 09:29 AM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
Add support for request parameter "metadataPrefix=eml". This returns EML 2.1.0 records in an OAI-PMH format. EML 2.0.0 and 2.0.1 documents are first transformed to EML 2.1.0 using the eml201to210.xsl stylesheet that is packaged with the EML Utilities.

4943 05/11/2009 08:39 AM Duane Costa

Begin development for Bug 3835: Design and implement OAI-PMH compliant harvest subsystem

4936 04/29/2009 12:50 PM Chris Jones

In AuthSession, I've modified the formatOutput() method to include both the email and organization values found in the userInfo array. On successful login(), this changes the returned xml to include <email> and <organization> elements if they exist in the userInfo array. This information is useful to web client applications that need to show login status beyond just the users full name.

4926 04/15/2009 11:13 AM daigle

Add ssl virtualhost. Change non-ssl to work with ssl.

4916 04/13/2009 04:27 PM walbridge

Further fixes to handle mixed-file uploads:
- set the fileCount object based on upCount existing files
- use ucount only if it exists; remove debugging'
- the entry form javascript now correctly tracks the file numbers, and can be relied on instead of using upCount...

4905 04/06/2009 03:28 PM walbridge

Display helpful error message when user lacks permissions to edit a document, supress the 'use Morpho' message (closes Bug #3928)

4901 04/03/2009 02:47 PM walbridge

Three small fixes:
- 'salutation' was misspelled and wasn't picked up correctly in document modificiation
- keyword handling wasn't setting the thesaurus correctly
- check against the full list of moderators for the ACL validation

4891 04/01/2009 05:01 PM walbridge

Adding back fix for editing documents with multiple keywords, closing #3929

4873 03/26/2009 05:02 PM daigle

Update version to 1.9.1. Add nrs ldap properties to configuration.

4871 03/26/2009 04:02 PM ben leinfelder

remove DataTranspose from core metacat - only used in FIRST skin for this 1.9.1 release

4870 03/26/2009 02:04 PM walbridge

Include hack for UCNRS organization properties.

4868 03/26/2009 11:09 AM walbridge

- build up username using base if username isn't fully qualified (e.g. cn=Manager,dc=ecoinformatics,dc=org)
- additional debugging statements for changePassword

4866 03/25/2009 06:29 PM walbridge

- fix error reporting for failed password reset request
- automatically generate necessary LDAP parameters from our defaults,
included in auth.base and unaffiliated properties. This won't work for
skins such as UCNRS with a different base, which still need to be ...

4865 03/25/2009 04:38 PM walbridge

- reformat header
- add debugging for getLdapEntry searches
- add 'filter' parameter for organizations

4864 03/25/2009 03:42 PM walbridge

Provide improved contextUrl, provide proper URL in password reset message body

4863 03/25/2009 03:04 PM daigle

Accidentally removed ACCESS constant declaration. Restored.

4861 03/25/2009 02:41 PM daigle

Roll back replication user changes. Fix code that converts access levels to integer and to text.

4856 03/24/2009 10:17 AM daigle

Introduce replication user. Use the fileutil writer methods instead of writing directly.

4855 03/23/2009 05:02 PM ben leinfelder

new datamanager feature!
Pivot a result set (rows to columns).
Handles simplest case:
-single id column (observation)
-single pivot column (pivot)

4854 03/23/2009 02:56 PM daigle

Beef up exception handling from file utilities. Move UtilException to MetacatUtilException to eliminate conflict with similar exception in utility package.

4851 03/19/2009 10:25 AM daigle

Do not read or write zero length documents to/from disk

4849 03/17/2009 05:12 PM daigle

Handle all places where ldap may be null

4848 03/17/2009 04:54 PM daigle

enclose more references to ldap and mesg in the if (ldap) statement.

4847 03/17/2009 04:40 PM daigle

made mesg var global to function.

4846 03/17/2009 04:35 PM daigle

left off ;

4845 03/17/2009 04:28 PM daigle

Do not try to use non-existant ldap object if ldap server is down.

4841 03/13/2009 01:27 PM daigle

Use only one eml common stylesheet directory for all post 2.0.0 beta versions of eml. Point all eml versions to that directory in skin xml files.

4819 02/27/2009 10:42 AM daigle

distribute perl autosplit.ix file with metacat. change tomcat startup script output to echos.

4818 02/27/2009 10:40 AM daigle

Add db rollback scripts

4815 02/20/2009 01:28 PM daigle

update workers.properties with more standard ajp13 worker name (not used until apt-get install project)

4812 02/18/2009 04:30 PM daigle

Format indexPaths in metacat.properties. Remove from build.properties and build.xml. Move indexPath list getter from MetacatUtil to SystemUtil.

4811 02/17/2009 04:01 PM daigle

Replace System.out.println statements with logMetacat statements.

4810 02/17/2009 02:45 PM daigle

moved file from metacat/bin to metacat/src/scripts/bash since eclipse uses <project>/bin as a default build directory and these files will consistently get blown away locally by eclipse.

4809 02/17/2009 02:22 PM daigle

Replace System.out.println statements with logMetacat statements.

4808 02/17/2009 09:32 AM daigle

Update replication documentation and fix code so that replication log is available.

4805 02/17/2009 09:28 AM daigle

Separate the concept of a backup file location and a metacat external directory location. These can be totally different.

4803 02/11/2009 05:40 PM ben leinfelder

Fixes include:
-Overwriting existing DTDs on the filesystem if they exist and registration in the DB failed
-only registering a DTD once

4800 02/10/2009 05:25 PM ben leinfelder

do not include the column name when inserting into an auto-increment column

4799 02/10/2009 04:50 PM daigle

Make sure and write the shortcut to the backup directory to a directory in the users home.

4797 02/09/2009 03:01 PM daigle

Add the service registration xml schema to the database. The ecogrid build will add the schema files to the application (see seek)

4795 02/03/2009 04:01 PM daigle

Allow for backup properties to be written to context based subdirectory of the external configuration directory. This allow multiple instances of metacat to be run side by side.

4789 01/29/2009 10:15 AM daigle

Add a short sleep when moderator accepts document so system can update. This will make sure correct documents get returned to moderators list.

4785 01/27/2009 04:31 PM daigle

Change name of writeTempFile to writeTempUploadFile since this instance deals with the temporary upload dir specifically

4782 01/27/2009 10:28 AM daigle

Added exception to error xml to clarify error to api.

4781 01/27/2009 10:27 AM daigle

writeTempFile was trying to write the same file as the registry. Changed to write the file to an "upload" subdirectory. Also throws IOException so errors get reported back to api.

4780 01/26/2009 04:38 PM daigle

Handle sessions with null ids gracefully.

4779 01/26/2009 04:38 PM daigle

Do not throw exception when skin metadata file is missing. Instead, remove the skin from the available skins list, write an error message to the log and continue on. This was already done for the skins properties file.

4778 01/26/2009 01:46 PM daigle

Check for null session ID when touching session.

4776 01/26/2009 10:19 AM daigle

Get the organization list from org.name.<orgname>= property. Add these values back into metacat.properties.

4774 01/23/2009 03:40 PM daigle

Changing the ChangePassword method to fix password reset broke the password change functionality. Moved the fix (add dc to username) into the handleResetPassword function.

4773 01/23/2009 11:10 AM daigle

Fix typo after the error message

4772 01/23/2009 09:39 AM daigle

Include the dc in the user name when connecting to ldap to change password.

4771 01/22/2009 03:04 PM walbridge

Handle non-responsive LDAP referrals without killing the script, but still require the main LDAP to be up.

4770 01/22/2009 02:39 PM daigle

Add cgiPrefix to the template variables.

4769 01/21/2009 04:28 PM daigle

Don't worry about checking for user permissions when inserting a new document

4767 01/20/2009 12:26 PM walbridge

Add a few more debugging messages to LDAPweb to help find timeout issues

4766 01/20/2009 10:09 AM daigle

Do not back up password properties

4762 01/19/2009 11:53 AM daigle

Only configure skins that are correctly configured in the skins directory.

4761 01/19/2009 11:52 AM daigle

Check for existance of backup file location at startup time.

4760 01/16/2009 04:09 PM daigle

Only show the backup configuration screen if the system cannot discover a directory.

4758 01/15/2009 07:41 PM walbridge

A slew of fixes in the process of fixing bug #3679:
- omit port number from the contextUrl if running on 80, looks bad in exposed URLs
- explicitly pass the metacat object to newAccessionNumber, the global definition of the object had introduced a difficult to track bug...

4754 01/15/2009 11:38 AM walbridge

- move moderatorComments into //additionalMetadata/metadata/ as per EML 2.1 (Bug #3679)
- overlay skin-specific email properties on system-level properties (email hostname)

4751 01/14/2009 04:05 PM daigle

Process affiliated ldap info

4749 01/14/2009 03:32 PM walbridge

Fix problem with failing authentication for creating new accounts. (Bug #3725)

4748 01/13/2009 05:27 PM walbridge

minor change to help nick test irccat

4747 01/13/2009 05:20 PM walbridge

Enable debugging for LDAPweb.