Revisions to Harvester Class Diagram and Harvester Class Descriptions.
Resubmitted as binary. Modification of the Harvester database ER diagram. Includes foreign key added to the XML_DOCUMENTS table from the SITE_SCHEDULE table
Modification of the Harvester database ER diagram. Includes foreign key added to the XML_DOCUMENTS table from the SITE_SCHEDULE table
Fixed hardcoded admin account so that it works with more than just OBFSRegistry.
New site list for NRS reserves in the confgiruation file from K Browne.
Fixed registry bug involving a string comparison (used numericequality instead of string equality).
Adjusted the text on the NCEAS repository page. Changed the project listso that it now displays short title but uses the long title in theentry. This was doen because the long titles were far too long to displaydecently in the list (the box scrolled way off the right of the page).
Removed unneeded Net::LDAP dependency. Now all authentication occursindirectly through Metacat.
Added skin for the UCNRS data registry based on earlier work. Minormodifications to the templates to accomodate this. Fixed a validationbug in the register-dataset.cgi, and removed an unnecessary Net::LDAPlogin as well because the authentication is handled by metacat.
Restoring AuthLdap to previous search filter. Determined that the problem wasa missing o: attribute in the UCNRS LDAP directory. Adding it in makes the oldmethod work. The change I had made caused some confusion about authenticationbecause using just uid for a filter caused too many return dn's, and it was just...
Fixed validation check for samplingDescription.
Another eml.jar version with the appropriate config.xml in place.
New eml.jar that includes the parser bug fix against eml-2.0.0 schemas.
Changed label for NCEAS project group list on the web form.
Changes to re-enable the nceas admindb access for the production install.
Removed some debugging test code that isn't needed.
Revised the registry guide to include descriptions of the new fields, andmade some minor formatting changes.
Changing version in build in preparation for a release.
Added studyExtent and samplingDescription fields to the registry to accomodateSandy's request for a temporalDescription field. This is a little more thanshe wanted, but it was needed to satisfy EML minimum requirements.
Modified LDAP authentication to support a lookup for the NRS system. Ifthe auth on the provided string fails as a DN, try to look up a newDN based on the UID. If we get a match, use that DN for auth and seeif that works. This allows us to use a referral within the...
Update result set from relation to trip.
Removed obsolete SRB support files that are no longer used.
Added taxonomic coverage and authority fields, and fixed a bug in reentrywith the methods fields. Now we are collecting information on all of theadditional fields Sandy requested except for a general temporal description,which doesn't fit neatly in EML. Will need to consider how to accomodate...
Added geographic description to the fields of data collected, as it isa required field and was being improperly defaulted to an empty string in theXML document. This is a new field for all registries.
Modifications to add "Methods" collection to the data registry, and tomake the forms HTML 4.0.1 valid (in an attempt to figure out some ofthe rendering and layout oddities I'm seeing).
Changed "Document ID" to "ID" which is mroe appropriate for data packages.
New formatting and text for the NCEAS data registry.
Further changes to the registry scripts to support the NCEAS registrywith access to the project list fromthe admindb. Also, fixed a bug withthe script where creators were getting duplicated in the editing processaccidentally.
Configuration file for NCEAS registry.
Modifications that allow working group entries to be put in as creators, anda whole bunch of re-formatting for horribly formatted code that I need toread to finish this thing up.
Adding style files for the new NCEAS skin for metacat, which includesfiles needed for the NCEAS data repository.
Updated registry further for NCEAS-specific needs. Confirm data templatenow handles new wg field. Still need to write WG metadata into EML document.
Additional work on the NCEAS/AdminDB integration. Working Groups nowpresented as a dropdown box for multiple selection. Need to write theinfo to the XML file now and handle it in confirmation template.
Preliminary changes to support the NCEAS data registry connection to theAdminDB to retrieve project lists.
Harvester Class Diagram
Remove corrupted version
Revisions to the Harvester ERD diagram showing how I think the design canbe simplified to eliminate duplicate information. Needs further workbefore it is implementable.
Harvester Class Diagram, class descriptions, sequence of operations.
Improvements to the OBFS stylesheet, especially for EML display. Now weimport the eml_xsl.css stylesheet and override several of its templates.
Relocated to metacat/lib/harvester
Relocated to metacat/docs/dev/harvester
Relocate to metacat/docs/dev/harvester
took out h2 tags, added valign=top to TD containing logo, and added missing quotes on a link target=top
deleted harvesterConfiguration.xsd. This has been replaced by harvestDocument.xsd now found in metacat/lib/harvester and metacatHarvesterERD.vsd (/metacat/docs/dev/harvester) which models the database tables to be added to metacat.
This is the harvesterDocument.xsd. It will be used to validate harvestDocument.xml documents.
This is the metacat database schema with the additions for harvester.
moved document to metcat/test/harvest directory
This is a sample of a harvest document relocated from the metacat/lib directory
This is a sample of a harvest document.
This is an xml schema that describes the harvest document. The harvest document provides a metacat docid, a document type and a url for "get" ing the eml document.
Enabled stylesheet parameters to be passed through metacat even when the'query' function is called. Previously, query would interpret allparameters except a few hardcoded ones to be pathexpressions that should bebuilt into a squery. Now, metacat.properties contains a new configuration...
Updates that allow registry script to update the lastid field more efficientlyby calling the metacat 'getlastdocid' function for a given scope. Also somedebugging support added, and a bug where the error message was inproperlysaved across calls to metacat, resulting in spurious error messages.
Build changes that allow the registry install dependency on the beta6 stylesheet converters to be automatically satisfied. Now, if thewebmdentry module hasn't been checked out, it is, but otherwise thecheckout is skipped. A similar technique could be used for the EML...
Added new function "getLastId" to the Metacat.pm perl Metacat client. Returnsthe hisghest docid in use in a given scope.
New build system that creates a war file and deploys it to tomcat. Alsoupdated the web.xml files so that a better servlet path is used. Now, bydefault, the servlet path will be: /knb/metacat (as opposed to theprior servlet path which was /knb/servlet/metacat and depended on the...
Moved the metacat.properties file from the jar file to now be located inthe tomcat context directory in WEB-INF. Now the metacat configuration iseditable in place. This change depends on a new Options.java class in theutilities module, so be sure you do a "clean" build in metacat so that you...
Add harvester targets
Improvements to Harvester single file upload servlets
Harvester forms to support single file upload to metacat.
Fixed links to ldapweb to include the cfg param for proper styling.
removed search box from header
corrected image path
missed an edit when fixing the bug whereby form names aren't allowed to contain hyphens
build props for production metacat on ecoinfo
bug fix: added code to strip brackets and hyphens from form names in results page
added conditional setting of tomcat servlet.jar path, based on tomcat version in build properties
made results page table header into <th> so we can apply a different css style to eml stylesheet subheaders. added whitespace above& below section headers
overhaul of ant build file. removed duplicate code for getting dtds and schema. Renamed these targets, pulled all code for copying xsl into a single target (still need separate targets for getting beta6 eml files nad eml2+ files, since older version uses dtds instead of schema.) In future, as eml versions are added, the geteml2+ target shoudl be updated to use the ant iterator class found in the utilities module - this would enable the cvs tags to be defined as a comma-delimited list, and then a common target can be called multile times to do the checkouts, instead of duplicating code. Also added description= attributes to all the targets that looked as if they shoudl be public. These now appear (with their descriptions) when the user types ant -projecthelp
changed getdtdschema tarhet to copy eml css to cvs source tree metacat/lib/style/common directory, same as the copy for the XSL stylesheets. Created new ant parameter to hold value of path lib/style/common.
fixed iframe tag- had multiple closings. Also added text for browsers that can't display iframes
Remove email notification from registry script.
cleaned up css greatly by importing eml css and knb css
knb.css now impots common eml css file - still need to fix layout in eml display tho' - something is being overridden and messes up alignment
changed knb skin index page to forward to knb site and include any user params in url. changed resultset.xsl so qformat is handled properly in posts. changed build file to copy default.css from eml checkout to style/common so other skin-specific css can import it if reqd
added JS to maintain ?name=value url params thru' redirect
added search gif used in default homepage
added line to installCommon target that copies the metacat-client.jar to the WEB-INF/lib directory
This is the merge from the branch WEB_UI_REDESIGN_BRANCH back into the head.The only files that have been removed are those in lib/style/eml2; other filesthat have been cvs removed (only from lib/ and lib/style) have been re-addedelsewhere (i.e. moved from one directory to another)....
Remove unneeded file Upload999.java
If the sessionid is null and user will be treated as public.
Get rid of doctype declare in transfer.
Set system id for transforming.
Modified a method and can be reused.
A proposed configuration file format for the metacat harvester. This format is a simple XML document that details the schedule for harvesting, the user under which harvested documents should be owned, and the list of documents to be harvested,
If db pool size is maxium and no connection is free. The checkout will be wait.
superseded - now these elements are pulled in from the knb website
Harvester UML activity diagram in jpeg format. This is a preliminary look at some "value added" or quality control componenets. Created initially in Oracle's JDeveloper
Harvester UML activity diagram in svg format. This is a preliminary look at some "value added" or quality control componenets. Created initially in Oracle's JDeveloper
Harvester UML activity diagram in jpeg format. Created initially in Oracle's JDeveloper
Harvester UML activity diagram in svg format. Created initially in Oracle's JDeveloper
new include files for metacat web pages - header and search box. Still need to remove hard-coded context uris
Add a checking for xml_nodes insert finished, then start build index table.
Get rid of etral http:// in parties'url
Remove UPPER function for >, < operator.
Add a new search mode not-contains.
Modified a debug Message.
Added a browse stylesheet that indexes data sets by keyword, creator, andorganization, all on one page. Use style=browse to access.
Some minor formatting improvements to keyword index, and change stylesetting to style=keywords to access.
Added a new stylesheet and style-set that allows one to display all of thekeywords from a query on metacat in a sorted, unique list. Each keywordis a link to a metacat query that returns all of the data packages thatreference that keyword. Use style=browse to invoke this stylesheet on a...