Metacat

script to generate DOI registration spreadsheet
https://redmine.dataone.org/issues/2815

share the same dbConnection when inserting and then updating SystemMetadata objects in the backing store.
any errors encountered during the update will rollback the entire transaction and the SM record will not exist, even in part.

Do not loadAllKeys() for SystemMetadataMap when Metacat first starts up. hzIdentifiers will be populated with a simple SQL statement rather than the serial loading of every single SystemMetadata object. It will remain in synch using the usual entryXXX() methods as before....

use LRU eviction policy and a small (1000) map size limit to avoid running out of memory because of a large number of system metadata objects

Set the default maximum number of database connections back to 200. After discussion, we've decided it will be better to increase the PostgreSQL limit to 300 and keep Metacat's pool size pretty big.

include pidFilter handling - only matches the complete pid. Issues a warning in the Metacat logs when pidFilter cannot be applied but allows the call to getLogs() to return as though there was no pidFilter given.
https://redmine.dataone.org/issues/2798

use at least one thread on single-processor machines.
https://redmine.dataone.org/issues/2800

Change the database.maximumConnections property to 100. PostgreSQL's docs says it can handle "a few hundred", and would need to be increased from the default 100 max_connections. For DataONE optimization, we increase max_connections, however there are more processes making connections other than metacat, so I'll reduce metacat's default share.

script for re-applying missing FK constraints on KNB production DB.
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5608

include TRACE level debugging for specific classes we want to have performance metrics for.