Activity
From 02/19/2010 to 03/20/2010
03/18/2010
- 11:25 AM Bug #4890: findMatchingAnnotations(...) needs Context
- Reopening but as a Morpho plugin bug.
Now that the annotation manager can search on context, we need to include it in... - 11:22 AM Bug #4890: findMatchingAnnotations(...) needs Context
- now you can provide a list of Triples (Entity, Relationship, Entity) as part of the search criteria.
03/17/2010
- 04:51 PM Bug #4891: Rank annotation search results
- [4:42pm] bowers: i'm not super big on using "or" and "and" in search
[4:42pm] bowers: i think it should all be "or" w... - 04:51 PM Bug #4891 (Resolved): Rank annotation search results
- "just like google"
- 04:48 PM Bug #4889: Compound Search UI
- Another recommendation: do away with AND/OR confusion and use the search results ranking to indicate how closely the ...
- 04:25 PM Bug #4889: Compound Search UI
- Include Context relationship searching. This needs to be added to the SMS AnnotationManager
- 04:00 PM Bug #4889 (Resolved): Compound Search UI
- Place-holding bug for work done on the search interface.
Initially there was a single screen for specifying Entity/C... - 04:45 PM Bug #4890: findMatchingAnnotations(...) needs Context
- [4:31pm] bowers: i think the madlib stuff could be reused for this ... although you might want a way to say that two ...
- 04:28 PM Bug #4890 (Resolved): findMatchingAnnotations(...) needs Context
- Likely the first of many enhancements to the AnnotationManager API.
We need to allow searching based on Context.
... - 11:36 AM Bug #4882: Use OBOE Measurement class to auto-fill other fields
- cutting installers for folks to check out this feature.
enter bugs as needed for tweaking
03/16/2010
- 03:50 PM Bug #4882: Use OBOE Measurement class to auto-fill other fields
- I've added a method to the SMS OntologyManager that can be used to look up the restrictions that are defined on the M...
03/15/2010
- 04:55 PM Bug #4882: Use OBOE Measurement class to auto-fill other fields
- i've casually been calling this a "Measurement template"
- 11:14 AM Bug #4882 (Resolved): Use OBOE Measurement class to auto-fill other fields
- By defining subclasses of OBOE's Measurement class (of Characteristic, uses Protocol, etc...) we can just have one wi...
03/11/2010
- 06:03 PM Bug #4878: Ontology Browser - popup closes when clicked anywhere (Win XP)
- Now checking that the focus shift is from one field to another (rather than to a popup). This prevents the popup from...
- 05:31 PM Bug #4878 (Resolved): Ontology Browser - popup closes when clicked anywhere (Win XP)
- From the madlib (column) view:
-click a class selection field
-pop up shows
-try to expand the root node
-popup c...
03/04/2010
- 03:26 PM Bug #4856: Ontology Browser as a non-modal palette
- IRC conversation:
----
bowers: what if instead of or in addition to drag and drop, it worked more palette like
[12:27... - 10:39 AM Bug #4854: Integrate Context Annotation tab with Column Annotation tab
- Started by making the CustomList have a madlib string representation of the context entry. The template is such:
"The... - 10:00 AM Bug #4853: Save as Duplicate... should copy the Annotation too
- Or should it?
It could also be an option since I can see wanting to get rid of the annotation (starting fresh) like i...
03/01/2010
- 02:36 PM Bug #4856: Ontology Browser as a non-modal palette
- Use Proposals:
------------
1. Drag and Drop
-class can be selected from the tree and dragged to a:
-madlib field ... - 09:42 AM Bug #4856 (New): Ontology Browser as a non-modal palette
- From Shawn:
---
5. I still think we should display the current drop-down term
selection as a panel in the right-ha... - 09:39 AM Bug #4855 (New): Reorder the Full Annotation rows to match madlib order
- From Shawn:
---
2. The full annotation should be more closely aligned to the terms
used in the madlib. So, e.g., I... - 09:37 AM Bug #4854 (New): Integrate Context Annotation tab with Column Annotation tab
- Make one compete madlib for the column annotation.
---
1. I'd like to see the context annotation tab be folded int... - 09:11 AM Bug #4853 (Resolved): Save as Duplicate... should copy the Annotation too
- If you duplicate an EML package, the Annotation should be duplicated as well
02/25/2010
- 01:32 PM Bug #4844 (Resolved): Dynamically resize Ontology selection fields
- This used to work when I was using a label to render the ontology selection widget, but the text field does not resiz...
- 12:03 PM Bug #4824: Ontology Browser - double click does not always select and close the popup
- while working on this, I noticed that if you tab between windows (cmd+tab on Mac) you'd trigger the pop up to be show...
- 11:34 AM Bug #4824: Ontology Browser - double click does not always select and close the popup
- ...because the tree is recreated during the search (typing in the text field), the double click listener was lost.
It... - 11:13 AM Bug #4824: Ontology Browser - double click does not always select and close the popup
- This seems to be happening when I type in the text field to initiate a search
- 11:09 AM Bug #4819: "Column Annotation" view duplicates mappings
- I should have been editing this bug instead of the bug about overwriting annotations. They were caused by the same is...
- 10:51 AM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
- -added logging
-use member variable for annotation page reference (used in event handling methods)
-reset the annotat... - 09:57 AM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
- and it's back
- 09:42 AM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
- this is working now. I've restricted how you can use the AnnotationPage's methods so as to avoid duplicating mappings...
02/24/2010
- 03:16 PM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
- here's my thinking:
-there should be a [rather lightweight] class that holds the tabbed pane
-this AnnotationTabPane ... - 02:08 PM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
- Alternatively, create StateChangeEvents that reflect the change regardless of where it happens, so that updates to th...
- 02:02 PM Bug #4836 (Resolved): Column Annotation page overwrites changes made in Full Annotation
- Because of how I've set up the listener on the madlib tab, if you make a change directly to the annotation table, the...
- 01:38 PM Bug #4833: Direct Annotation (table) is adding incomplete mappings
- I introduced this bug when consolidation the code that looks up the current annotation and attribute. simple as omitt...
- 01:27 PM Bug #4833 (Resolved): Direct Annotation (table) is adding incomplete mappings
- When I double click a cell in the annotation table to select a class I end up completely hosing the annotation and th...
- 01:16 PM Bug #4823: Save Annotations... menu option improvements
- these are committed. 'course we have to figure out a better "whole package" save eventually.
- 11:15 AM Bug #4822: Include "Annotation Context" tab for editing the contexts
- done
- 10:54 AM Bug #4822: Include "Annotation Context" tab for editing the contexts
- Now using the Context tab to add/edit/remove the entries.
Now I just need to remove the Add/Remove Context... menu it...
02/23/2010
- 03:28 PM Bug #4822: Include "Annotation Context" tab for editing the contexts
- the sizing issue has been dealt with.
- 02:23 PM Bug #4822: Include "Annotation Context" tab for editing the contexts
- added a new page that uses one of Morpho's CustomList widgets to make the modifications.
so far:
-the page is a third... - 08:21 AM Bug #4822 (Resolved): Include "Annotation Context" tab for editing the contexts
- Currently you can only add a new context relationship or remove an existing one. There is no dedicated UI for display...
- 10:30 AM Bug #4825: Add Context is not saving the Relationship
- now getting the class from the widget, whereas previously the whole class URI was in the text field
- 09:51 AM Bug #4825 (Resolved): Add Context is not saving the Relationship
- When you add a Context to the currently selected Observation, the context is saved in the XML, but the Relationship i...
- 08:27 AM Bug #4824 (Resolved): Ontology Browser - double click does not always select and close the popup
- I've intermittently found that double clicking the tree does not actually close the popup - instead it behaves like t...
- 08:22 AM Bug #4823 (Resolved): Save Annotations... menu option improvements
- 1. There should be no ellipsis since there is not additional UI after invoking the option. (There should be when we s...
02/22/2010
- 05:23 PM Bug #4821: Changes in madlib view do not immediately show in table view
- When the tab is changed, a column selection event is fired which triggers the annotation to be saved as it currently ...
- 05:01 PM Bug #4821 (Resolved): Changes in madlib view do not immediately show in table view
- If you enter an annotation in the "Column Annotation" tab then switch to the "Full Annotation" view you will not see ...
- 04:45 PM Bug #4819: "Column Annotation" view duplicates mappings
- I encountered another case where the values from one annotation were populating and saving in another column's.
I cha... - 03:27 PM Bug #4819: "Column Annotation" view duplicates mappings
- Now "resetting" the madlib annotation tab so that the old values are not saved as a new mapping for the next selected...
- 11:57 AM Bug #4819 (Resolved): "Column Annotation" view duplicates mappings
- If you enter an Annotation using the Column Annotation madlib view, then switch to the table view and select another ...
02/19/2010
- 10:33 AM Bug #4813: Include class label/description when searching
- Now searching the labels that are included in the ontology.
- 09:25 AM Bug #4813 (Resolved): Include class label/description when searching
- Right now searches are fuzzy matching on the class name only. We should be looking into other text that is associated...
- 10:01 AM Bug #4780: "Mad lib" annotation screen
- closing for now - bound to be additional changes requested after review
- 10:01 AM Bug #4814: Highlight search result matches in ontology browser
- highlighting the first core match in the result tree
- 09:27 AM Bug #4814 (Resolved): Highlight search result matches in ontology browser
- Currently the tree expands and prunes to show only search matches, their ancestors, their children, and their sibling...
- 09:04 AM Bug #4788: Popup lightweight ontology browser
- closing this - i like how it's working at the moment. feels pretty natural to navigate and double click
Also available in: Atom