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From 11/10/2005 to 12/09/2005

12/09/2005

10:51 AM Revision 2827 (metacat): ESA img files for the ESA Header this incorporate the test changes and the additional submission button. The ESA Home button has been removed from the header but the ESA log will link to the ESA Home site.
There is some additional button code depending on the state of the login or the use
of the submissions button.
Logi...
bowdish
10:48 AM Revision 2826 (metacat): ESA img files for the ESA Header this incorporate the test changes and the additional submission button. The ESA Home button has been removed from the header but the ESA log will link to the ESA Home site.
bowdish
10:45 AM Revision 2825 (metacat): These swap image *.gif files are for the ESA Header changes that include the submission buttons as well as text changes to the buttons. We decided to remove the ESA Home button but the ESA logo still links to the ESA home site.
bowdish
10:17 AM Revision 2824 (metacat): Unix port of transform.bat
tyburczy
04:38 PM Revision 2823 (metacat): Simple DOS batch file to transform an XML document (eg an eml doc) into HTML (or whatever) using an XSLT stylesheet
brooke

12/08/2005

02:57 PM Revision 2822 (metacat): Eliminate hard-coding of the knb context from the advanced search code. Advanced search servlet determines the metacat context name by reading the metacat.properties file at servlet initialization.
Duane Costa
02:02 PM Revision 2821 (metacat): Simple bash script to query metacat (using wget) and transform the XML
resultset into a text file using an XSLT stylesheet. Matt Jones
10:50 AM Bug #2313 (New): Metacat Skins: Skins should not be installed by default
Not all skins should be installed when metacat is installed. Hence it should be
configurable in build.properties wh...
Saurabh Garg
10:43 AM Bug #2312 (Resolved): finalize header graphic for ESA registry
The header is almost complete except for final wording changes on buttons and
final detail on the moderation list bu...
Matt Jones
10:40 AM Bug #2311 (Resolved): modify stylesheets to display citation format
Wehn displaying EML documents in the ESA registry (and maybe others in the
future), we will want to display the 'cit...
Matt Jones
10:38 AM Bug #2310: Advanced search functionality has to be integrated into various skins.

Setting milestone to 1.7
Saurabh Garg
10:38 AM Bug #2310 (Resolved): Advanced search functionality has to be integrated into various skins.
The new advanced functionality needs to be integrated into all the skins. Right
now it is only part of the default ...
Saurabh Garg
10:24 AM Bug #2060: Documents not indexed because of error generated during indexing of documents
Closing for now. The code seems to be working for now. Saurabh Garg
10:22 AM Bug #2136: Replicate deleted documents in Replication
Now, we add documents in xml_revisions table to the reponse of getUpdate action.
I also modify the code for writing d...
Jing Tao
10:19 AM Bug #2091: Don't determine document namespace by "schemaLocation" attribute

Fixed. Seems to be working fine for now. All the documents replicated to knb1
seems to have doctype set correctly.
Saurabh Garg
10:14 AM Bug #2084: Pathquery support for temporal search on date fields

Moving to 1.7 as not enough time to get this done for 1.6 deadline.
Saurabh Garg
10:13 AM Bug #2222: Bug in squery when using not-contains

Fixed. Closing the bug as it seems to be working fine.
Saurabh Garg
10:13 AM Bug #2158: Metacat Performance on KNB: Bring the logging level down on ecoinfo.

Fixed. Metacat uses log4j and the level is set to WARN by default.
Saurabh Garg
10:11 AM Bug #2154: Metacat Performace: Configurable path condition indices

Done. Closing the bug as it is working fine.
Saurabh Garg
10:10 AM Bug #2153: Metacat Performace: Add/drop indices on key columns

Not enough time to do this for 1.6 release. The performance is fine for now. We
can take this up again in 1.7 relea...
Saurabh Garg

12/07/2005

02:14 PM Revision 2820 (metacat): This is a basic commandline client for resolving LSIDs. It is meant as
a quick and dirty testing utility. It requires the SOAP::Lite,
SOAP::MIME, and MIME::Entity CPAN modules. Run witho...
Matt Jones
10:59 AM Revision 2819 (metacat): Reformatted LSID code for consistency.
Matt Jones

12/06/2005

03:09 PM Revision 2818 (metacat): Added apache commons logging to the LSID servlet using log4j. Remove println statements.
Matt Jones

12/05/2005

02:50 PM Revision 2817 (metacat): copy log properties to the deployment for LSID.
Matt Jones
02:41 PM Revision 2816 (metacat): Properties for logging in LSID resolver.
Matt Jones

12/02/2005

02:13 PM Revision 2815 (metacat): Changed search option checkboxes to radio buttons. Restored ant headers. Removed dialog box warnings when changing search options.
tyburczy
02:10 PM Revision 2814 (metacat): changed paragrah style to "intro" for text not in the boxes
bowdish
02:04 PM Revision 2813 (metacat): unbolded text in boxes and took out the background color for most of the box.
bowdish
10:48 AM Revision 2812 (metacat): cleaned up formatting - need to test spacing around the table "boxes" , and the boxes alignment
bowdish
10:46 AM Revision 2811 (metacat): ESA update to Search Feature and cleaning up some formatting - search feature needs testing. Changed <menu> to <ul>
------------------------------------
Error C:\Documents and Settings\Callie\Desktop\metacat\lib\style\skins\esa\in...
bowdish
10:25 AM Revision 2810 (metacat): bugfix so that getlastdocid works for postgres
sgarg

12/01/2005

03:35 PM Revision 2809 (metacat): few adjustments added discription of the Morpho software that Margret Conners suggested. trying to fix spacing and alignment problem with "boxes"
bowdish
02:08 PM Revision 2808 (metacat): modified mod_revise so that Revision Requested is added to the document in additionalMetadata/moderatorComment which can be used by the skin in searching for documents which havnt been requested for revision
sgarg
02:03 PM Revision 2807 (metacat): Modified the search queries so that moderator doesnt see the documents for which revision is requested
sgarg
10:56 AM Revision 2806 (metacat): Updated NCEAS Data Repoitory changes - replaced text "auspices" with "as part of" got ride of the text about the data set being reviewed and implemented suggestion from Margret Conners.
bowdish
10:53 AM Revision 2805 (metacat): added for Morpho Information on NCEAS Data Repository page
bowdish
10:32 AM Revision 2804 (metacat): New template for displaying results from the accept, reject and revise actions
sgarg
10:25 AM Revision 2803 (metacat): new variables specifying the esa specific templates
sgarg
10:24 AM Revision 2802 (metacat): Modified the resultpage to display the message sent in the post request
sgarg
10:19 AM Revision 2801 (metacat): Following changes:
1. Fixed a bug in checking of contact email address field
2. Added functions to display the result of accept, reject ...
sgarg
10:11 AM Revision 2800 (metacat): Added new variables to the script which creates templates for new skins
sgarg
04:28 PM Revision 2799 (metacat): Add some servlet mapping for axis.
Jing Tao

11/30/2005

03:18 PM Revision 2798 (metacat): iNew jar files for LSID soap support.
Matt Jones
02:19 PM Revision 2797 (metacat): added 70px left margin to body elements. specified 0px left margins for bodies of header html files
tyburczy
11:50 AM Revision 2796 (metacat): Updates for Moderator header changes - center text and remove double green line
bowdish
11:34 AM Revision 2795 (metacat): updated the ESA Header with View Documents Pending Moderation changes - centered and placed gray rectange over the top ofthe ViewDocPend gif
bowdish
11:31 AM Revision 2794 (metacat): Updated changes to Moderation link on header - centered, space under the "underline" removed double green line by adding a gray vector to cover the top of
the ViewDocPend.gif bowdish
11:02 AM Revision 2793 (metacat): fix for the access control check - earlier only permission 4 and 7 were checked for read. Now the query checks for permissions 5 and 6 also
sgarg
09:35 AM Revision 2792 (metacat): Added a new variable to control if admin is made the owner of the document
sgarg
08:52 AM Revision 2791 (metacat): update for moderator header
bowdish
08:44 AM Revision 2790 (metacat): Fireworks files for updateing graphics and header code (*.png)
bowdish
08:37 AM Revision 2789 (metacat): updated to work with the moderator
bowdish
08:37 AM Revision 2788 (metacat): Modified the xsl so that regular user sees View and Edit button
sgarg
08:34 AM Revision 2787 (metacat): Modified code to that isModerator param is passed to the xsl which will render the results.
sgarg

11/29/2005

02:46 PM Revision 2786 (metacat): Fixed a bug in the way taxon rank and taxon value were assigned.
sgarg
02:45 PM Revision 2785 (metacat): Changing the links in the esa header.
sgarg
08:49 AM Bug #2207: Advanced Search integration
On 11/22/2005, Duane Costa wrote
Hi Matt,
I've checked in all my code to enhance the default skin with Advanced Sea...
Duane Costa
04:50 PM Revision 2784 (metacat): Some small bug fixes...
sgarg

11/28/2005

02:47 PM Revision 2783 (metacat): New functions in the dataset registry to support moderation feature needed for ESA
sgarg
02:38 PM Revision 2782 (metacat): Fixed the bug in the link to view documents pending moderation. The links works now.
sgarg
01:11 PM Revision 2781 (metacat): add a token to specify the login form template
sgarg
01:09 PM Revision 2780 (metacat): Changing the table name back to xml_index
sgarg
01:04 PM Revision 2779 (metacat): a new variable for the moderation email template and change in value of some other variables
sgarg

11/23/2005

01:32 PM Revision 2778 (metacat): Fixes to enable SOAP support for the LSID resolver. Axis now is
installed as a component of the authority context and the services list
is properly displayed. Added the happyaxis.j...
Matt Jones
12:03 PM Revision 2777 (metacat): Minor change to diagnostic output.
Duane Costa
05:44 PM Revision 2776 (metacat): Fixed a log bug.
Jing Tao

11/22/2005

03:09 PM Revision 2775 (metacat): New templates for ESA skin.
loginForm.tmpl is useful in displaying a login form
and esaModNotification is useful in sending notifications to the ...
sgarg
02:53 PM Revision 2774 (metacat): Add a client-side check: if user does not enter any search values, prompt the user with a dialog box to confirm that the user wishes to go ahead with a search for all documents. This is equivalent to the behavior in the simple search box.
Added a hidden input field for siteValue with a value of "ALLSITES". This is a substitute for the siteValue drop-down... Duane Costa
02:45 PM Revision 2773 (metacat): Modify the bean's get() methods that return String values to trim white space off the string prior to returning it. This is so that input fields that contain only white space will not be treated as valid search values.
Duane Costa
10:28 AM Revision 2772 (metacat): Updated names of jar files in build.xml for LSID support.
Matt Jones
06:09 PM Revision 2771 (metacat): Added axis servlet defs in web.xml
Matt Jones
05:42 PM Revision 2770 (metacat): New libraries for axis 1.3.
Matt Jones

11/19/2005

05:10 PM Revision 2769 (metacat): New SQL tables and db upgrade scripts that define a new table stucture for identifiers and delete the previously unused accession_number table. This is in anticipation of supporting LSID identifiers. Currently these tables are unused by the servlet but are in place for discussion.
Matt Jones
04:44 PM Revision 2768 (metacat): Cleaned up AccessionNumber class to get rid of unused methods. It seems the entire accession_number table is no longer used but has not been deleted from the build. Will do in subsequent commit.
Matt Jones

11/18/2005

01:25 PM Revision 2767 (metacat): 1. Modified buildIndex() so that only one connection is used for both indexing nodes and indexing paths.
2. Modified the indexing algo so that indexing of paths is done while nodes are being indexed. Results in a much fast... sgarg
01:24 PM Revision 2766 (metacat): Change the code level of the MetacatHasDoc harvester operation from "Warning" to "Info". This is to reduce the amount of diagnostic output generated in the email reports to the site contact.
Duane Costa
01:18 PM Revision 2765 (metacat): Change the maximum code level reported to the site contact from "info" to "notice". This is to reduce the amount of diagnostic output generated in the email reports to the site contact. Diagnositcs of type "error", "warning", and "notice" will be sent to the site contact, while messages of type "info" and "debug" will not (but they will still be sent to the Harvester Administrator).
Duane Costa
01:17 PM Revision 2764 (metacat): Modified the way checkDocumentTable is accessed. Also removed the while loop from the checkDocumentTable. Now if the document is not found, the thread goes to sleep - instead of checking again. (In hope of a more bugfree code)
sgarg
01:11 PM Revision 2763 (metacat): Replaced access to NodeRecord.<variable> with NodeRecord.<getVariable>
sgarg
01:10 PM Revision 2762 (metacat): 1. Changed teh access modifier from public to private for variables
2. Added a new variable for nodedatanumerical
3. added a new constructor
sgarg
01:08 PM Revision 2761 (metacat): Moved printMessage statements to inside the if loop so that they are not printed each time getInstance is called
sgarg

11/17/2005

03:21 PM Revision 2760 (metacat): Bug #2207. Metacat Advanced Search interface.
Improvements to Advanced Search form:
(1) Delete keywordSearch() function. Not used in advanced search form.
(2) Re-i...
Duane Costa
01:27 PM Revision 2759 (metacat): Using xml_path_index instead of xml_index to find documents which havnt been indexed.
sgarg
12:37 PM Revision 2758 (metacat): Replaced hardcoded namespaces with variable defined in metacat.properties
sgarg
12:35 PM Revision 2757 (metacat): Replaced hardcoded link with ant token
sgarg
12:32 PM Revision 2756 (metacat): Modified links for the Accept, Delete and Review buttons
sgarg
12:30 PM Revision 2755 (metacat): Replaced hyperion.nceas.ucsb.edu with @mailhost@
sgarg
12:29 PM Revision 2754 (metacat): a new variable for the namepsaces to be indexed
sgarg
11:38 AM Revision 2753 (metacat): Changed logMetacat to be a local variable in MetaCatServlet to avoid any potential threading issues.
Matt Jones
05:27 PM Revision 2752 (metacat): Metacat has had problems with threading issues when accessed from ecogrid. These problems may stem from the use of shared global variables within the servlet that are not protected against threading problems. We used a lot of these, which I am eliminating in this commit. Besides final variables used as constants (which are not a problem), now there are only three unprotected variables (sessionHash, logMetacat, and conn) which are harder to eliminate. I will be discussiong this with Sid tomorrow to see how to eliminate them.
Matt Jones

11/16/2005

01:07 PM Revision 2751 (metacat): Fixed the bug that replicate data file failed that the documents records wouldn't be deleted.
Jing Tao
01:07 PM Revision 2750 (metacat): the parameter of method getRevisionTableReList is docidWithoutRev.
Jing Tao
12:38 PM Revision 2749 (metacat): Fixed bug that data file upload failed, record couldn't be deleted.
Jing Tao
10:43 AM Revision 2748 (metacat): Bug #2207. Add new build target, advancedsearchjar. This allows the Advanced Search engine to be built as a library for use in other web applications. This is important because LTER is currently using a separate web application for its interface to the Metacat data catalog, so the library allows the search engine to be used both inside and outside Metacat. Eventually LTER would like to fully re-integrate its Metacat interface with the lter skin, so eventually the need for this build target may go away.
Duane Costa
10:37 AM Revision 2747 (metacat): Bug #2207. Enable hyperlink to the Advanced Search form.
Duane Costa
10:35 AM Revision 2746 (metacat): Bug #2207. New JSPs added to the default skin to support Metacat Advanced Search interface.
Duane Costa
10:34 AM Revision 2745 (metacat): Bug #2207. Add new CSS class to set the correct iframe sizes for the Advanced Search box.
Duane Costa
10:32 AM Revision 2744 (metacat): Bug #2207. Add two new JavaScript variables to support Metacat Advanced Search interface.
Duane Costa
10:31 AM Revision 2743 (metacat): Bug #2207. Add new JavaScript function to support Metacat Advanced Search interface.
Duane Costa
10:22 AM Revision 2742 (metacat): Bug #2207. Add AdvancedSearchServlet to support Metacat Advanced Search interface.
Duane Costa
09:57 AM Revision 2741 (metacat): Bug #2207: Implementation of the Metacat Advanced Search engine.
Duane Costa
04:59 PM Revision 2740 (metacat): Fixed a bug in log
Jing Tao

11/13/2005

06:15 PM Revision 2739 (metacat): Fixed log bug when xml_revision updated failed.
Jing Tao

11/11/2005

12:15 PM Revision 2738 (metacat): Removed extra package declaration in LSID java file.
Matt Jones
12:09 PM Revision 2737 (metacat): Initial checkin of LSID support code for metacat. The LSID support here
provides access to metacat documents through an LSID identifier. The
identifier takes the form:
urn:lsid:ecoinform...
Matt Jones
10:12 AM Revision 2736 (metacat): Add new index value for distribution url.
Jing Tao
10:03 AM Revision 2735 (metacat): Added parameter to specify how long the indexing Thread should wait for the docid to show up in xml_documents
sgarg
10:01 AM Revision 2734 (metacat): Changes in calls made to IndexingQueue class
sgarg
10:00 AM Revision 2733 (metacat): A version with less number of bugs.
sgarg

11/10/2005

02:13 PM Revision 2732 (metacat): New code for run an indexing queue and indexing thread which runs every 24 hours
sgarg
01:40 PM Revision 2731 (metacat): Removed the call to indexing function in DBSAXHandler and added a call to indexing function IndexingQueue
sgarg
01:38 PM Revision 2730 (metacat): removed the indexing code from DBSAXHandler
sgarg
01:34 PM Revision 2729 (metacat): 1. Added code to start the indexing thread.
2. Fixed a bug in the query on xml_nodes and xml_index
3. Added more debug statements
4. Fixed a bug in code which de...
sgarg
01:22 PM Revision 2728 (metacat): New function which returns the formatted left join query. This is required as Oracle and postgres have different left join syntax
sgarg
01:19 PM Revision 2727 (metacat): new variables defined for the indexing threads.
sgarg
 

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