Activity
From 03/26/2014 to 04/24/2014
04/24/2014
- 04:20 PM Bug #6517 (Closed): Sanparks FGDC upload does not accept data files
- Switched to use Apache's FileUpload library and can now handle the chunked streaming uploads. Added a test for this s...
- 01:28 PM Revision 8748 (metacat): switch to use FIleUpload instead of O'Reilly COS library for handling chunked file uploads. https://projects.ecoinformatics.org/ecoinfo/issues/6517
- 01:26 PM Revision 8747 (metacat): forgot to check in the actual class: first pass at allowing admins to update DOI registration. This only acts on EML objects at the moment and is meant to illustrate one mechanism for updating the DOIs. https://projects.ecoinformatics.org/ecoinfo/issues/6530
- 11:50 AM Feature #6512: Add brief explanation to Metacat docs for using custom map markers in a custom theme
- Technically this is a part of the metacat project
- 11:49 AM Task #6532 (Closed): Explain different metacat and CN endpoints in the MetacatUI docs
- Add a section to the Metacat documentation that explains how to create a new AppModel for pointing to a custom endpoi...
- 11:22 AM Bug #6531 (Resolved): Make sure that the MN node description wouldn't be overwritten by the default value during a Metacat upgrading
- When a Metacat was configured as a DataONE member node, the node description and et al would be stored in the metacat...
04/23/2014
- 12:35 PM Revision 8746 (metacat): first pass at allowing admins to update DOI registration. This only acts on EML objects at the moment and is meant to illustrate one mechanism for updating the DOIs. https://projects.ecoinformatics.org/ecoinfo/issues/6530
- 12:18 PM Feature #6530 (Resolved): Create a new service to update DOI pointers
- Add to the admin interface a way to specify a list of pids or a formatId and update the URLs associated with those DO...
- 10:45 AM Bug #6520 (Closed): Metacat indexing the resource map prior to metadata document
- Tested package upload from Morpho and the resourceMap was successfully indexed.
- 10:20 AM Bug #6529 (Closed): Solr query used for ORE lookup in Metacat has a syntax issue
- Corrected the syntax in trunk and added an additional JUnit assertion to the ORE package test that already existed.
- 10:19 AM Revision 8745 (metacat): correct the ORE lookup query syntax and add junit assertion to check that it continues to function as expected. https://projects.ecoinformatics.org/ecoinfo/issues/6529
04/22/2014
- 03:39 PM Bug #6520 (In Progress): Metacat indexing the resource map prior to metadata document
- Now we will submit the ORE for indexing after we are sure the metadata document has been indexed.
- 01:31 PM Bug #6520: Metacat indexing the resource map prior to metadata document
- I also saw the error when i used morpho 1.10 to insert a package with data:
[ERROR]: org.apache.solr.common.SolrExce... - 01:30 PM Bug #6520: Metacat indexing the resource map prior to metadata document
- Actually, the localhost has the same error:
[ERROR]: Solr index doesn't have the information about the id tao.13010.... - 03:38 PM Revision 8744 (metacat): index the ORE after we submit the metadata for indexing. https://projects.ecoinformatics.org/ecoinfo/issues/6520
- 03:33 PM Bug #6529: Solr query used for ORE lookup in Metacat has a syntax issue
- I can see this happening on the KNB. Metacat is querying itself (solr index) to find potential OREs and seems there's...
- 03:26 PM Bug #6529 (Closed): Solr query used for ORE lookup in Metacat has a syntax issue
- I also saw the error when i used morpho 1.10 to insert a package with data:
[ERROR]: org.apache.solr.common.SolrExce... - 01:53 PM Bug #6516: Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
- Metacat indexed a document before it wrote to db. This issue was fixed.
- 01:51 PM Bug #6518 (Resolved): Authentication service in Ecogrid only access metacat through http connection
- Using the SystemUtil.getMetacatServletUrl to replace the hard-coded "http" in authenciation, put, authenticatedQuery ...
- 11:43 AM Revision 8743 (metacat): include BioPortal lookup for Entity matches using the data table description. TODO: only associate measurements to the entity observation if they apply.
04/21/2014
04/18/2014
04/17/2014
- 07:48 PM Bug #6525 (Closed): Got index already exists error when ran the db upgrade scripts from 2.2.1 to 2.4.1
- When I upgraded the metacat on mn-stage-ucsb-1.test.dataone.org, I got the error:
metacat 20140417-19:33:10: [ERRO... - 05:22 PM Revision 8740 (metacat): use 1.5.1 tag for hudson to build metacat ui (for KNB deployment)
- 04:18 PM Bug #6520 (Closed): Metacat indexing the resource map prior to metadata document
- When I tested the metacat replication, I got the error in the remote server when i used morpho 1.10 or online regist...
- 02:19 PM Revision 8739 (metacat): Index the document after it has been inserted.
- 02:18 PM Revision 8738 (metacat): Index the document after document is written to the db.
04/16/2014
04/15/2014
- 06:20 PM Bug #6518 (Resolved): Authentication service in Ecogrid only access metacat through http connection
- In https://code.ecoinformatics.org/code/seek/trunk/projects/ecogrid/src/org/ecoinformatics/ecogrid/metacat/auth/Metac...
- 04:28 PM Bug #6516: Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
- Note sure. Just see the issue today.
- 04:06 PM Bug #6516: Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
- This doesn't look like an Ubuntu issue - does it happen for other 10.04 hosts?
Is it just that indexing is trying ... - 03:56 PM Bug #6516 (New): Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
- When I use morpho 1.10 branch to insert a package into a local Metacat, which is ubuntu 14.04, the solr index works f...
- 04:03 PM Bug #6517 (Closed): Sanparks FGDC upload does not accept data files
> Hi Ben
> Soorry its me again. Im trying to upload FGDC data into dataknp and it doesnt seem to be working. If I...- 09:36 AM Revision 8736 (metacat): Remove the bean named eml.fileID which used the ResolveSolrField class.
04/14/2014
- 02:58 PM Revision 8735 (metacat): calculate geohash_3 to three places (typo)
- 02:55 PM Revision 8734 (metacat): use NSEW for the bounding box geohash calculation from EML - all versions
- 02:50 PM Revision 8733 (metacat): up the field count to 111 to include the 9 geohash fields.
- 02:07 PM Revision 8732 (metacat): Using 1.3.0-SNAPSHOT from d1_cn_index_processor
- 02:01 PM Feature #6512 (Rejected): Add brief explanation to Metacat docs for using custom map markers in a custom theme
- Since I've implemented a new way to use custom map marker and cluster images for each theme without overriding the D...
- 01:34 PM Revision 8731 (metacat): Add fields for geohashes
- 01:33 PM Revision 8730 (metacat): Add beans to support geohashes
- 01:33 PM Revision 8729 (metacat): Add beans to support geohashes
04/07/2014
- 01:26 PM Bug #6498 (Resolved): entryForm.js throwing errors in IE 8
- Added a check for undefined and null objects in the sortTagWithAttributeName function
- 01:25 PM Revision 8728 (metacat): Check for undefined and null elements to avoid errors in IE 8 and earlier in the registry entry form JS
04/04/2014
- 04:06 PM Bug #6498 (Resolved): entryForm.js throwing errors in IE 8
- I am getting an error in the sortTagWithAttributeName function - "Object is required" and the entry form will not sub...
- 12:03 PM Bug #6496 (Resolved): <span> HTML element is never closed in the Registry HTML, causing errors in IE8
- 11:45 AM Bug #6496 (Resolved): <span> HTML element is never closed in the Registry HTML, causing errors in IE8
- There is a span element in the Abstract area of the registry HTML sent from Metacat to MetacatUI which does not have ...
- 12:03 PM Revision 8727 (metacat): Close a <span> HTML tag in the entry form MetacatUI template to avoid errors in older browsers
04/03/2014
04/02/2014
- 03:40 PM Revision 8725 (metacat): add "test" for generating annotations based on the entity/attribute details of a datapackage. This iterates through all current EML revisions and either updates or creates annotations based on what it finds. It does add content to your metacat deployment (RDF files) but it can be safely re-run when each time we change our annotation algorithm.
- 03:36 PM Revision 8724 (metacat): check for null entities and/or attributes (typically when otherEntity is being used in EML).
- 03:35 PM Revision 8723 (metacat): remove extra space in log message
- 03:35 PM Revision 8722 (metacat): handle null Boolean in SM.archived field
03/31/2014
- 04:04 PM Revision 8721 (metacat): include sample data package for generating annotations. This is the classic Datos Meteorologicos set, but with Matthew Jones as the creator so that we can look up his ORCID in their sandbox environment. https://projects.ecoinformatics.org/ecoinfo/issues/6267
- 03:25 PM Revision 8720 (metacat): use Matthew Jones for test creator since he has an ORCID in their staging environment.
- 12:31 PM Revision 8719 (metacat): augment annotation indexing test/sample to include orcid annotation. https://projects.ecoinformatics.org/ecoinfo/issues/6267
- https://projects.ecoinformatics.org/ecoinfo/issues/6423
- 11:11 AM Revision 8718 (metacat): attribute the datapackage to the creator (using orcid if we can find it). https://projects.ecoinformatics.org/ecoinfo/issues/6267
- https://projects.ecoinformatics.org/ecoinfo/issues/6423
- 10:31 AM Revision 8717 (metacat): add test for BioPortal annotator service.
03/28/2014
03/27/2014
- 04:55 PM Bug #6488 (Feedback): Comply with DataONE MN.query() REST endpoint specifications.
- Committed to Metacat trunk for testing. Should support query URLs with and without leading "?" now.
- 04:52 PM Bug #6488: Comply with DataONE MN.query() REST endpoint specifications.
- The DataONE MN API docs indicate that the {query} parameter should be delimited with a "?". The Metacat MN implementa...
- 04:50 PM Bug #6488 (Closed): Comply with DataONE MN.query() REST endpoint specifications.
- 04:54 PM Revision 8715 (metacat): remove leading '?' in the query parameter for MN.query() implementation. We want it to match CN behavior/expectations and comply with the DataONE specification for the interface. https://projects.ecoinformatics.org/ecoinfo/issues/6488
03/26/2014
- 04:05 PM Revision 8714 (metacat): Use OBOE-SBC ontology for looking up concepts (it contains subclasses of our OBOE Characteristic and Standard superclasses). Restrict annotations to only subclasses that fit the OBOE model. Correct the xpointer and individual naming conventions so they are unique, but express the exact entity/attribute being annotated.
- 03:10 PM Revision 8713 (metacat): remove my api key. oops
- 03:02 PM Revision 8712 (metacat): add comment/pointer to BioPortal annotation service.
- 03:00 PM Revision 8711 (metacat): Include method to look up annotation classes from BioPortal. We still have OBOE-SBC in there, and theyhave the SWEET ontology. The suggestions returned are not perfect, but they can be better than nothing. Ideally, we'd only query a few ontologies so we don't end up using terms from medical ontologies that aren't really appropriate for our domain. https://projects.ecoinformatics.org/ecoinfo/issues/6256
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