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From 04/17/2014 to 05/16/2014

05/16/2014

04:49 PM Feature #6556 (Rejected): Create PROV annotations in ResourceMapFactory
Add methods such as addWasDerivedFrom() to add PROV triples to an RDF Lauren Walker
04:13 PM Task #6555 (Closed): Convert PNG diagrams in ORE Model Expansion doc to plantUML diagrams
Lauren Walker
04:12 PM Story #6548 (In Progress): Expand ORE model to allow relationships for derived datasets
A page in the metacat docs has been added to describe changes to Metacat's ORE model. Lauren Walker

05/13/2014

01:36 PM Feature #6554 (New): Tag the Metacat doc pages to populate the docs index
The Metacat docs index is pretty sparse right now with only 2 terms. It would be pretty simple to go through each pag... Lauren Walker

05/12/2014

12:55 PM Bug #6488 (Closed): Comply with DataONE MN.query() REST endpoint specifications.
been using this in Metacat/MetacatUI for a while now...closing. ben leinfelder
12:50 PM Feature #6416 (In Progress): Do not allow restrictive access control change to content with a DOI
Thinking about this more, we have only CN.setAccessPolicy() in the DataONE API. So any change in the access policy wo... ben leinfelder
11:29 AM Bug #6475 (Feedback): CN.create() implementation sets SystemMetadata.archived=false
Commenting out this in the Metacat impl -- not sure why this was being set explicitly to begin with. ben leinfelder

05/07/2014

10:42 AM Story #6548: Expand ORE model to allow relationships for derived datasets
Looking at the ORE spec, this is certainly acceptable practice - they just want to make sure that there isn't any orp... ben leinfelder

05/06/2014

04:22 PM Story #6548 (Closed): Expand ORE model to allow relationships for derived datasets
Design a new model for Metacat's OREs where relationships:
- wasGeneratedBy
- derivedFrom
- used
- etc.
are ...
Lauren Walker
02:10 PM Bug #6546 (Closed): old metacat URIs should redirect to #view service
Metacat trunk now has the short form Metatcat read URIs redirecting to the Metacat UI #view using the looked-up pid/i... ben leinfelder

05/05/2014

01:39 PM Bug #6546: old metacat URIs should redirect to #view service
It looks like we have decided that we will redirect users to the new KNB /#view service from the /metacat/{docid} KNB... Lauren Walker
11:37 AM Bug #6546: old metacat URIs should redirect to #view service
For the perl registry, I ended up needing another Metacat servlet method to get the docid when given a pid:
https://...
ben leinfelder
11:21 AM Bug #6546: old metacat URIs should redirect to #view service
We could update the Metacat KNB skin with a informational message about the new KNB redesign with a link to the new K... Lauren Walker
10:52 AM Bug #6546: old metacat URIs should redirect to #view service
You are proposing a redirect from a Metacat docid to a DataONE Identifier -- these are not always the same value and ... ben leinfelder
02:25 AM Bug #6546 (Resolved): old metacat URIs should redirect to #view service
Researchers have complained that prior citations on the KNB metacat of the form:
https://knb.ecoinformatics.or...
Matt Jones

04/30/2014

02:17 PM Feature #6530 (Resolved): Create a new service to update DOI pointers
I checked in the UpdateDOI class today which has the ability to either:
-Update all DOIs for metadata with an EML na...
Lauren Walker
01:33 PM Bug #6531 (Resolved): Make sure that the MN node description wouldn't be overwritten by the default value during a Metacat upgrading
I can't reproduce the bug any more. I also looked the code and the node description shouldn't be overwritten by the d... Jing Tao

04/25/2014

02:25 PM Bug #6542 (Closed): Fix MNodeService.systemMetadataChanged() to be asynchronous
The DataONE MNWebTester will at times show failures against Metacat MNs for calls to MNAuthorization.systemMetadataCh... Chris Jones

04/24/2014

04:20 PM Bug #6517 (Closed): Sanparks FGDC upload does not accept data files
Switched to use Apache's FileUpload library and can now handle the chunked streaming uploads. Added a test for this s... ben leinfelder
11:50 AM Feature #6512: Add brief explanation to Metacat docs for using custom map markers in a custom theme
Technically this is a part of the metacat project Lauren Walker
11:49 AM Task #6532 (Closed): Explain different metacat and CN endpoints in the MetacatUI docs
Add a section to the Metacat documentation that explains how to create a new AppModel for pointing to a custom endpoi... Lauren Walker
11:22 AM Bug #6531 (Resolved): Make sure that the MN node description wouldn't be overwritten by the default value during a Metacat upgrading
When a Metacat was configured as a DataONE member node, the node description and et al would be stored in the metacat... Jing Tao

04/23/2014

12:18 PM Feature #6530 (Resolved): Create a new service to update DOI pointers
Add to the admin interface a way to specify a list of pids or a formatId and update the URLs associated with those DO... Lauren Walker
10:45 AM Bug #6520 (Closed): Metacat indexing the resource map prior to metadata document
Tested package upload from Morpho and the resourceMap was successfully indexed. ben leinfelder
10:20 AM Bug #6529 (Closed): Solr query used for ORE lookup in Metacat has a syntax issue
Corrected the syntax in trunk and added an additional JUnit assertion to the ORE package test that already existed. ben leinfelder

04/22/2014

03:39 PM Bug #6520 (In Progress): Metacat indexing the resource map prior to metadata document
Now we will submit the ORE for indexing after we are sure the metadata document has been indexed. ben leinfelder
01:31 PM Bug #6520: Metacat indexing the resource map prior to metadata document
I also saw the error when i used morpho 1.10 to insert a package with data:
[ERROR]: org.apache.solr.common.SolrExce...
Jing Tao
01:30 PM Bug #6520: Metacat indexing the resource map prior to metadata document
Actually, the localhost has the same error:
[ERROR]: Solr index doesn't have the information about the id tao.13010....
Jing Tao
03:33 PM Bug #6529: Solr query used for ORE lookup in Metacat has a syntax issue
I can see this happening on the KNB. Metacat is querying itself (solr index) to find potential OREs and seems there's... ben leinfelder
03:26 PM Bug #6529 (Closed): Solr query used for ORE lookup in Metacat has a syntax issue
I also saw the error when i used morpho 1.10 to insert a package with data:
[ERROR]: org.apache.solr.common.SolrExce...
Jing Tao
01:53 PM Bug #6516: Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
Metacat indexed a document before it wrote to db. This issue was fixed. Jing Tao
01:51 PM Bug #6518 (Resolved): Authentication service in Ecogrid only access metacat through http connection
Using the SystemUtil.getMetacatServletUrl to replace the hard-coded "http" in authenciation, put, authenticatedQuery ... Jing Tao

04/17/2014

07:48 PM Bug #6525 (Closed): Got index already exists error when ran the db upgrade scripts from 2.2.1 to 2.4.1
When I upgraded the metacat on mn-stage-ucsb-1.test.dataone.org, I got the error:
metacat 20140417-19:33:10: [ERRO...
Jing Tao
04:18 PM Bug #6520 (Closed): Metacat indexing the resource map prior to metadata document
When I tested the metacat replication, I got the error in the remote server when i used morpho 1.10 or online regist... Jing Tao
 

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