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From 11/30/2016 to 12/29/2016

12/29/2016

02:26 PM Revision 10169 (metacat): Clean up ISO stylesheet formatting
Bryce Mecum

12/28/2016

01:38 PM Revision 10168 (metacat): Fixed a typo.
Jing Tao
11:53 AM Revision 10166 (metacat): Add a new completed task.
Jing Tao
11:51 AM Feature #7058 (Resolved): Action reindexall should be asynchronized
The submit is now in another thread and the return will be immediate. Jing Tao
10:42 AM Revision 10164 (metacat): The indexall action will be run on another thread.
Jing Tao

12/27/2016

02:17 PM Revision 10162 (metacat): Change the default test replication server.
Jing Tao

12/23/2016

06:17 PM Revision 10160 (metacat): Start the basis for gmd:distributionInfo
Bryce Mecum
06:02 PM Revision 10159 (metacat): Minor tweaks and code cleanup to ISO XSLT
- Renamed the folder once more to be more correct Bryce Mecum
05:58 PM Revision 10158 (metacat): Improve the EML XSLT's handling of ORCIDs as userIds
Bryce Mecum

12/22/2016

06:28 PM Revision 10155 (metacat): Remove the referenced bean rdfXmlSubprocessor which was on the removed file application-context-oa.xml.
Jing Tao
05:11 PM Revision 10154 (metacat): remove unused OA indexing file and reference
ben leinfelder
04:15 PM Revision 10153 (metacat): Add the provenence subprocessor.
Jing Tao

12/21/2016

03:46 PM Revision 10152 (metacat): Change the metacat ui version to 1.13.3
Jing Tao
03:00 PM Revision 10150 (metacat): Add the release note for the 2.8.1
Jing Tao
02:34 PM Revision 10148 (metacat): extract "metadata" fields from result output now rather than dedicated fields in the model
ben leinfelder
02:30 PM Revision 10147 (metacat): Change the param from the class field to a local variable.
Jing Tao
12:06 PM Revision 10145 (metacat): Add support in the EML XSLT for making ORCID userIds into links
Bryce Mecum
11:25 AM Revision 10143 (metacat): Remove the inadvertant UTF-8 BOM from the beginning of the file, and initialize the contact variable properly (again).
Chris Jones
09:15 AM Revision 10142 (metacat): include group lookup field in mdq indexing
ben leinfelder
06:49 PM Revision 10141 (metacat): Multiple changes to the ISO XSLT
- Renamed base folder from iso to iso19139
- Added a short_citation template for showing thesauri in tight places suc...
Bryce Mecum
05:04 PM Bug #7170 (New): Ignore the access part change in the EML sax parser classes when users use dataone api to update an eml object
In old Metacat api, an eml document contains the access control rules of both itself and the data files which are ref... Jing Tao

12/16/2016

12:02 PM Revision 10140 (metacat): Change the condition that remove identifier from the identifier table in the method removeSystemMetaAndIdentifier.
Jing Tao
10:57 AM Task #7169 (Resolved): Register schema files for the format id FGDC-STD-100.1-1999
Jing Tao
10:57 AM Task #7169 (Resolved): Register schema files for the format id FGDC-STD-100.1-1999
Details see https://redmine.dataone.org/issues/7953 Jing Tao
10:48 AM Revision 10138 (metacat): Add the pid in a debug statement.
Jing Tao
07:31 PM Revision 10136 (metacat): Add the sql to register schema files for the format id fgdc-st-001.1-1999.
Jing Tao
07:29 PM Revision 10134 (metacat): Add the sql to register schema files for the format id fgdc-st-001.1-1999.
Jing Tao
04:28 PM Revision 10131 (metacat): Added XSD files for the 1999 FGDC Biological Data Profile Schema.
Matt Jones

12/15/2016

02:41 PM Revision 10130 (metacat): Add the code to check if the object does exist in the create method. If it doesn't, the system metadata and identifier will be removed.
Jing Tao
02:40 PM Revision 10129 (metacat): Change the calling code when the method insertOrUpdateDocument signature is changed.
Jing Tao
12:36 PM Revision 10126 (metacat): use text() in xpath for multi-valued funder extraction
ben leinfelder

12/14/2016

03:21 PM Revision 10125 (metacat): Add the test method for the new methods to determine if an object file does exist or not for the given local id.
Jing Tao
03:18 PM Revision 10123 (metacat): Add methods to determine if the object does exist with the given local id.
Jing Tao
03:08 PM Revision 10121 (metacat): Add a resource map file for testing.
Jing Tao
05:20 PM Revision 10119 (metacat): correct xpath an solr settings for funder field
ben leinfelder

12/13/2016

02:47 PM Bug #7163 (Resolved): Calling cn.synchronize method asynchronously in mn.updatesystemmeta on Metacat
Jing Tao
02:43 PM Revision 10118 (metacat): Add some performace debug information.
Jing Tao
01:09 PM Revision 10116 (metacat): make funder a multivalued field.
ben leinfelder
11:36 AM Revision 10115 (metacat): extract check.echo.funder.1 output value for the "funder" index field
ben leinfelder

12/12/2016

03:45 PM Bug #7149 (Resolved): Private metadata is indexed as isPublic=true
Bryce confirmed that the object was switched from public readable to private readable. Chris reindexed it ant it stil... Jing Tao
01:08 PM Bug #7168 (Resolved): ReIndexing a document lost some prov information in the new generated solr doc
Used a vector to store the multiple values and the new code worked. Jing Tao
11:57 AM Revision 10114 (metacat): Add the code to handle the merge-needed fields having multiple pairs.
Jing Tao

12/10/2016

05:09 PM Bug #7168 (Resolved): ReIndexing a document lost some prov information in the new generated solr doc
Before I reindexed the urn:uuid:dcbdbea1-573f-4696-8590-14d6876d8d7e document on mn-dev-ucsb-1, it had four values on... Jing Tao
04:59 PM Bug #7163 (In Progress): Calling cn.synchronize method asynchronously in mn.updatesystemmeta on Metacat
Jing Tao
04:58 PM Bug #7149 (In Progress): Private metadata is indexed as isPublic=true
I believe this document was changed from public to private. Our solr merge mechanism had an issue:
https://projects....
Jing Tao
04:56 PM Bug #7156 (Resolved): Solr index still keep the obsoletedBy field even though it was removed from the system metadata and reindexed
It turns out that our solr index merge mechanism had an issue. It always copied the fields from the existing solr doc... Jing Tao

12/09/2016

03:39 PM Revision 10112 (metacat): During index merging process, if a field is a system metadata field and current document doesn't have the field, we don't need to merge it from the existing solr document.
Jing Tao

12/08/2016

02:29 PM Bug #7167 (Resolved): MNodeService.updateSystemMetadata() needs to validate obsolescence chain pids
Added methods to check the circular obsoletes/obsoletedBy chains in the D1NodeService class. Also wrote the junit tes... Jing Tao
02:20 PM Revision 10110 (metacat): Change the id since the original one doesn't exist in the group anymore.
Jing Tao
02:18 PM Revision 10108 (metacat): Add junit test methods for testing circular obsoletes/obsoletedBy chain in the mn.updateSystemmetadata method.
Jing Tao
02:15 PM Revision 10106 (metacat): Add methods to check if there are circular obsoletes/obsoletedBy chains in the mn.updateSystemmetadata method.
Jing Tao
04:06 PM Revision 10104 (metacat): Don't share the same executor in the two classes.
Jing Tao

12/07/2016

01:34 PM Revision 10102 (metacat): Call the cn.synchronize method asynchronously in the mn.updateSystemmetadata method.
Jing Tao
10:11 AM Task #7165 (Closed): Use the provenance Spring bean file from d1_cn_index_processor in Metacat
Peter and Lauren tested and it worked. Jing Tao
08:36 AM Bug #7167 (Resolved): MNodeService.updateSystemMetadata() needs to validate obsolescence chain pids
When calling @MNodeService.updateSystemMetadata()@, if there is a circular reference in the @obsoletes@ or @obsoleted... Chris Jones
04:43 PM Bug #7166 (Closed): Metacat DataONE base url always gets 404 not found page
In the lib/web.xml.tomcat6 file, I added two servelet mappings:
<servlet-mapping>
<servlet-name>MNRestServletV2...
Jing Tao
04:29 PM Bug #7166 (Closed): Metacat DataONE base url always gets 404 not found page
The base url looks like:
https://mn-dev-ucsb-1.test.dataone.org/metacat/d1/mn
It always gets 404 not found page. ...
Jing Tao
04:38 PM Revision 10100 (metacat): Add the version information on a log statement.
Jing Tao
04:36 PM Revision 10098 (metacat): Add the version information in a log statement.
Jing Tao
04:34 PM Revision 10096 (metacat): Add servlet mappings for d1 base url.
Jing Tao

12/06/2016

03:58 PM Revision 10094 (metacat): re-include mdq context file after merge
ben leinfelder
03:58 PM Revision 10093 (metacat): include mdq composite score
ben leinfelder
12:48 PM Revision 10092 (metacat): remove root node in xpath (for some reason this wasn't working on mn-demo-8 but was locally).
ben leinfelder
06:05 PM Revision 10091 (metacat): Change the test since we added a new schema field.
Jing Tao
05:54 PM Revision 10089 (metacat): Add new hash code of the solr schema after we added a new field prov_generated.
Jing Tao
05:42 PM Revision 10087 (metacat): Add the class to upgrade the solr schema.
Jing Tao
05:35 PM Revision 10085 (metacat): Add a script to upgrade the db to 2.8.1
Jing Tao
05:34 PM Revision 10084 (metacat): Change the version to 2.8.1
Jing Tao
05:27 PM Revision 10081 (metacat): Increase the version to 2.8.1
Jing Tao
05:26 PM Revision 10080 (metacat): Increase the version to 2.8.1
Jing Tao
05:26 PM Revision 10079 (metacat): Increase the version to 2.8.1
Jing Tao
05:17 PM Revision 10074 (metacat): Increase it to 2.8.1
Jing Tao
05:09 PM Revision 10073 (metacat): Add the a new field prov_generated which will be used in the provenance subprocessor.
Jing Tao

12/05/2016

03:30 PM Task #7165: Use the provenance Spring bean file from d1_cn_index_processor in Metacat
However, we need to add the field "prov_generated" in the solr schema file. Jing Tao
03:29 PM Task #7165 (Closed): Use the provenance Spring bean file from d1_cn_index_processor in Metacat
I just merged the file from d1_cn_index_processor to Metacat. Jing Tao
11:51 AM Revision 10071 (metacat): Merge the code for rdfxml subprocessor from d1_cn_index_processor to metacat.
Jing Tao
11:44 AM Revision 10070 (metacat): include v1 in the run mdq formatId
ben leinfelder

12/03/2016

04:17 PM Revision 10068 (metacat): Add the prefix "prov_" the solr fields.
Jing Tao

12/02/2016

09:07 AM Revision 10066 (metacat): adjust color-based score calculations to match UI and add up to total result count
ben leinfelder
08:21 AM Revision 10065 (metacat): add indexing for scores based on successful checks by check.type
ben leinfelder
08:04 AM Revision 10064 (metacat): use dateConverter for run timestamp indexing
ben leinfelder
06:19 PM Revision 10063 (metacat): include initial MDQ run processing in metacat-index
ben leinfelder

12/01/2016

01:38 PM Bug #7164 (New): View service rendering EML project abstract incorrectly
The view service's XSLT for rendering EML is producing output that doesn't look quite right. See attached screenshot.... Bryce Mecum
12:39 PM Bug #7161 (Resolved): Uploading a resource map with provenance data causes an NPE during indexing
Wrote a new MetacatRdfXmlSubprocessor which overwrites the code to access the solr http server directly. I also wrote... Jing Tao
11:20 AM Revision 10062 (metacat): Use a new class to overwrite the class RdfXmlSubprocessor in d1-processor since that one has a method to use solr http server directly.
Jing Tao
10:24 AM Revision 10060 (metacat): merge changes from d1 indexing lib
ben leinfelder
01:35 AM Revision 10059 (metacat): Continue work on ISO XSLTs
- We now have a template for CI_Citation
- I moved some templates into separate XSLTs
- Cleaned up overally structure...
Bryce Mecum

11/30/2016

03:36 PM Bug #7163 (Resolved): Calling cn.synchronize method asynchronously in mn.updatesystemmeta on Metacat
Details please see:
https://redmine.dataone.org/issues/7947
Jing Tao
12:52 AM Revision 10058 (metacat): Include the files that were totally supposed to go in the last commit
Bryce Mecum
12:51 AM Revision 10057 (metacat): Continue work in ISO XSLT
- Tweak how extents are displayed
- Start adding support for GML Polygons
- Restructure EX module templates and clean...
Bryce Mecum
 

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