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From 04/18/2017 to 05/17/2017

05/18/2017

09:58 PM Revision 10296 (metacat): Reget the object inputstream in order to calculate the correct checksum.
Jing Tao
08:45 PM Revision 10294 (metacat): Add the checksum as the parameter to the method write.
Jing Tao
08:42 PM Revision 10292 (metacat): Add the code to computer the checksum.
Jing Tao
08:39 PM Revision 10290 (metacat): Add the checksum parameter to the write method.
Jing Tao
08:37 PM Revision 10288 (metacat): Move the checking if the checksum exists into the create method.
Jing Tao
08:34 PM Revision 10286 (metacat): Add the checksum parameter to the method DocumentImple.write.
Jing Tao
08:26 PM Revision 10284 (metacat): Add a method to test the miss-matched checksum for creating a metadata object.
Jing Tao

05/17/2017

03:37 PM Revision 10282 (metacat): Add a new test method to test the miss-matched checksum for the data object.
Jing Tao
03:32 PM Revision 10280 (metacat): Add the checksum as a parameter to the method handleInsertOrUpdate.
Jing Tao
03:26 PM Revision 10278 (metacat): Add the checksum parameter to the handleInsertorUpdate method.
Jing Tao
03:15 PM Revision 10276 (metacat): Add the checksum parameter to the handleInsertAndUpdate method.
Jing Tao
03:12 PM Revision 10274 (metacat): Change the signature of the method handleInsertAndUpdate.
Jing Tao
03:06 PM Revision 10272 (metacat): Add code to check the check sum by the DigestOutputStream.
Jing Tao
09:36 AM Revision 10270 (metacat): Removed the duplicated code to check the checksum in the replicate method since the method D1Node.create, which is called by the replicate method, has the mechanism.
Jing Tao
09:54 PM Revision 10268 (metacat): Revised the method for testing replication. It did nothing but does test the replication between the mock mn and the local host.
Jing Tao
09:50 PM Revision 10266 (metacat): Add the replication source node into the node locator.
Jing Tao
09:47 PM Revision 10264 (metacat): Add some methods to support the replicate.
Jing Tao
09:14 PM Revision 10262 (metacat): Add a mock mn node as the source node during a replication operation.
Jing Tao

05/16/2017

02:23 PM Revision 10260 (metacat): Add a integration test.
Jing Tao
02:22 PM Revision 10259 (metacat): Add two properties will be used in the dataone replication test.
Jing Tao
04:10 AM Bug #7188: MNodeService.replicate() is failing
The purpose of the checksum is to ensure integrity of content written to the data store. Computing a checksum enroute... Dave Vieglais

05/12/2017

12:17 PM Bug #7188: MNodeService.replicate() is failing
It would be best if the stream only has to be read once to be serialized and have the checksum checked, so we don't i... Matt Jones
11:41 AM Bug #7188: MNodeService.replicate() is failing
Chris and I discussed the issue today. We propose the solution this way:
1. Since MN.replicate and D1NodeService.cr...
Jing Tao
08:10 PM Bug #7188: MNodeService.replicate() is failing
But from Chris' table, those failures have started recently (May, 2017). So I am confused.
Before releasing Metaca...
Jing Tao
06:12 PM Bug #7188: MNodeService.replicate() is failing
Bummer that its been there a while. Such a hugely serious bug as this should have been caught by a test. I suggest ... Matt Jones

05/11/2017

04:12 PM Bug #7188: MNodeService.replicate() is failing
Rob confirmed that we have been use the AutoCloseInputStream a while ago. And Metacat has been use the d1_libclient_j... Jing Tao
04:09 PM Bug #7188: MNodeService.replicate() is failing
I debug the replicate method and found the class of input stream is org.apache.commons.io.input.AutoCloseInputStream.... Jing Tao
07:19 AM Bug #7188 (Resolved): MNodeService.replicate() is failing
Laura Moyers reported that she is seeing many failed replication attempts in the Coordinating Node index. In particu... Chris Jones
10:43 AM Revision 10249 (metacat): Add some debug information.
Jing Tao

05/10/2017

08:15 AM Bug #7187 (In Progress): Set file names correctly when reading objects from Metacat
I've modified @generateOutputName@ to use @SystemMetadata.fileName@ when it's available. We'll need to test this in a... Chris Jones
08:05 AM Bug #7187 (Resolved): Set file names correctly when reading objects from Metacat
We now store file names in @SystemMetadata.fileName@. In @MetacatHandler.readFromMetacat()@, we are currently genera... Chris Jones
08:12 AM Revision 10247 (metacat): Change MetacatHandler.generateOutputName() to use the SystemMetadata.fileName value when it is available. Needs testing.
refs https://projects.ecoinformatics.org/ecoinfo/issues/7187 Chris Jones

05/08/2017

10:48 AM Bug #7186 (Resolved): listObjects fails if there is pid with a white space in the list
Jing Tao

05/04/2017

11:49 AM Revision 10245 (metacat): Define location of the AWS binary so the tool works under CRON.
Matt Jones
11:25 PM Revision 10244 (metacat): Modified backup script to improve efficiency.
Now, lists of metadata and data files that were last backed up is stored in the /var/metacat/metacat-backup folder, a... Matt Jones

05/03/2017

02:23 PM Revision 10243 (metacat): Add the release note for the 2.8.2 version.
Jing Tao
02:11 PM Revision 10241 (metacat): The metacatui version was changed to 1.14.1
Jing Tao

05/02/2017

04:41 PM Revision 10239 (metacat): Add the code to filter out the pids with white spaces in the query.
Jing Tao
05:47 PM Bug #7186 (Resolved): listObjects fails if there is pid with a white space in the list
https://redmine.dataone.org/issues/8085#change-28820 Jing Tao
05:46 PM Bug #7184 (Resolved): The count number is -1 when the expandRightsHolder method lists the subjects
Jing Tao

05/01/2017

12:12 PM Bug #7185 (Resolved): EML SAX parser will not check if the user has the all permission on data objects (described by the eml object) when the parser is called by DataONE API
To the Metacat API, we still apply the checking. But to Dataone API, we don't. Jing Tao
12:11 PM Bug #7185 (Resolved): EML SAX parser will not check if the user has the all permission on data objects (described by the eml object) when the parser is called by DataONE API
In the old Metacat API, the data objects' access rules are controlled by the EML object which describes it. So when t... Jing Tao

04/26/2017

03:45 PM Bug #7176 (Closed): Metacat-index RDF/XML subprocessor not populating prov_hasDerivations field
The query was modified and it worked. Jing Tao
03:41 PM Bug #7184 (Resolved): The count number is -1 when the expandRightsHolder method lists the subjects
Please see details on:
https://redmine.dataone.org/issues/8059
Jing Tao
03:39 PM Bug #7183 (Closed): CN V1/V2.archive implementation only allows CN and MN administrators to act
Jing Tao
03:39 PM Bug #7183 (Closed): CN V1/V2.archive implementation only allows CN and MN administrators to act
Please see details on:
https://redmine.dataone.org/issues/7964
Jing Tao
11:23 PM Revision 10237 (metacat): Add backup script to copy files to Amazon S3.
Matt Jones

04/20/2017

03:10 PM Revision 10227 (metacat): Call the method TripleStoreService.destroy to delete the dataset.
Jing Tao
 

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