Metacat

- Clean up isoroot selectors and comments. Use relative xpaths when possible
- Clean up the output of the ex module
- Misc whitespace/formatting fixes

Trigger MDQ when inserting or updating metadata documents. https://projects.ecoinformatics.org/ecoinfo/issues/7171 and https://github.com/NCEAS/mdqengine/issues/73

Clean up ISO stylesheet formatting

Change the default test replication server.

Start the basis for gmd:distributionInfo

Minor tweaks and code cleanup to ISO XSLT

- Renamed the folder once more to be more correct

Improve the EML XSLT's handling of ORCIDs as userIds

Add support in the EML XSLT for making ORCID userIds into links

Multiple changes to the ISO XSLT

- Renamed base folder from iso to iso19139
- Added a short_citation template for showing thesauri in tight places such as the keywords list
- Tweaked the geographic coverage output so the static maps render in Metacat UI

Added XSD files for the 1999 FGDC Biological Data Profile Schema.

Add servlet mappings for d1 base url.

Add new hash code of the solr schema after we added a new field prov_generated.

Continue work on ISO XSLTs

- We now have a template for CI_Citation
- I moved some templates into separate XSLTs
- Cleaned up overally structure/styling of translated output

Include the files that were totally supposed to go in the last commit

Continue work in ISO XSLT

- Tweak how extents are displayed
- Start adding support for GML Polygons
- Restructure EX module templates and clean them up a bit

Continue work on ISO XSLT

- Cleans up the root element to better match what we want in the end (looks like the EML XSLT)
- Switches a lot of calls to call-template over to apply-templates. I think this is a good idea because the ISO standards use XSD type equivalence to extend existing schemas. e.g., gmx:Anchors can show up when the gmd schema says only a gco:CharacterString should go there...

Improve output of ISO XSLT

Hook ISO XSLT into view service

Create first basic version of ISO 19115 XSL stylesheets

use "PLACEHOLDER" for annotation target rather than the actual attribute name value (for manual annotations added from spreadsheet).

Change the ldapweb.cgi script to use an additional property called email.contact which provides a contat email (particularly when email.sender is set to noreply@...). Update the skin configurations with this property, as well as the metacat.properties default.

Add the update script for db 2.7.2

Add the fgdc schemas which downloaded from https://www.fgdc.gov/metadata/

Show the annotation target under the attribute name

Move the "go back to editing" button to the top of the confirm page too.
Make sure all links in the confirm stage open up in a new window.
Make the "yes submit" button styled as the primary choice.

Move the "MultiSelector" JS from the entryForm.tmpl to the entryForm.js. This ensures that the JS will run after all the functions in entryForm.js are declared. This was causing JS bugs in the registry and metacatui.

Make sure all links in the registry form and registry guide open up in a new tab.

Give the EML title HTML container a distinct class to hide it in MetacatUI (rather than using jQuery to hide it in MetacatUI. This is faster.)

Merge changes from 2.7 branch

Update the trunk with the confirmData template based on the 2.6.0 tag.

Add the upgrade script for 2.7.1

add sample DCX document for debug comparison. https://redmine.dataone.org/issues/7829

Add the property to call the solr schema upgrade java code.

render temporal periods and single dates. https://redmine.dataone.org/issues/7686

surround onedcx metdata display in form-horizontal section for more consistent layout with other metadata standards. https://redmine.dataone.org/issues/7686

place bounding coordinates in controls-well. https://redmine.dataone.org/issues/7686

consolidate online access section. format xsl whitespace

Change the db upgrade script to 2.8.0

add rendering for onlink to FGDC xslt. https://redmine.dataone.org/issues/7747

add creators and online access sections for DCX. https://redmine.dataone.org/issues/7686

add first pass at DCX XSLT. https://redmine.dataone.org/issues/7686

merge from 2.6 branch: include multiple alternate identifiers in hidden form if there is an error that needs to be corrected and resubmitted.

Merge changes from the 2.6.0 release.

merge from 2.6 branch: add support for EML 2.1.1 to DC crosswalking for OAI provider. https://projects.ecoinformatics.org/ecoinfo/issues/7030

merge from 2.6 branch: add support for EML 2.1.1 in OAI-PMH provider. https://projects.ecoinformatics.org/ecoinfo/issues/7009

merge changes to accommodate multiple alternative identifiers into trunk from 2.6 branch.

Add two properteis which d1_libclient_java will use them for http client.

Merge minor registry changes from the 2.6 branch back to the trunk.

refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/107

use the noaa version.

Remove the directory which doesn't exit on noaa.

Remove the directory which is not in the noaa.

Change the version to 2.7.0 and add a upgrade sql script.

Layout the study area descriptors a bit better in a table as opposed to a div. This also accommodates the name_or_id attribute (as the Code column), whereas the div didn't handle it. Needs som work on the citation column.

refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/42

Add project-level rendering into the eml-dataset XSLT. Convert the older table-based layout to use the Bootstrap 2.x classes for labels and divs.

refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/42

Added a version of noaa to svn.
Note:
1. gml311 and gml211 is from the standard version.
2. the xlinks.xsd is base on the version of skye's. I added the simpleLink, extenededLink and et al.

Add a funding input textbox into the entry form (not hidden per Matt), and add the hidden inputs into the confirmData and genericResponse templates for maintaining state across stages.

refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/42

Add a new chechsum for the new solr schema.

comment out (duplicate) EML download link since it does not apply in the CN context and the same functionality exists elsewhere in the MetacatUI rendering. https://redmine.dataone.org/issues/7639

Removed the sepcified path for the ldap ca file.

Remove the bypass button.

Add the help icons on the page.

Add the items for the ezid backup.

Change the label.

fixed a label issue.

Add a new property to show the status of configuration of the ezid service.

Add a page for configuring the ezid.

remove the password of the doi user.

comment out the party annotation-target - don't think we'll be using this anytime soon (had been for annotating with orcids)

Add a new property named application.readOnlyMode.

include expiration configuration option for NCEAS accounts to prevent errors during account registration. https://projects.ecoinformatics.org/ecoinfo/issues/6917

Set the metacat to 2.6.0 and add the db upgrade scripts.

merge jing's commit from the 2.5 branch to include the 2.5.1 upgrade utility in properties file.

Removed the jar file since it is replaced by the jar file from the maven.

merge from branch: use hash for latest solr schema

rollback to use entity/attribute id for the tab-pane (so it will work) and include new div id for the annotatable attribute section.

restructure attribute and party sections so that the annotatable div does not have DOM children.

Mrge from 2.5 branch: Clean up the admin and doc page styles, update all the screenshot images, and include a link to the MetacatUI Github

include index.tdb.directory property. https://redmine.dataone.org/issues/7442

Update the packageId attribute in EML documents on update. Never display the local docid in the rendered EML.

Add the "forward" value for the "dispatcher" in the filter mapping. So the proxy (using forward) and direct request will use the same filter.

Add a new version of this document from the svn trunk. The changes are all documentation.

Add v2 to the service.version list.

Add the schemas for ISO-119139/isotc211.object.

use v1 and v2 xsl as appropriate for rendering d1 types (object format list, mostly)

Add a new version of the schema.

Add the data schema from dataone svn trunk. It maybe needs to be updated in future.

Add a hash of a new index schema.

Move the dataset metadata label for metacatui EML

Mark the entity metadata sections in metacatui EML transformations

Changed the FGDC MetacatUI theme translation so that it displays nicely in MetacatUI and works correctly

Modified the dataone.nodeid from blank to urn:node:METACAT_TEST. Now the mn.updateSystemMetadata only allows be called on the authoritative node of a pid. In order to make junit test work, we need to have a value there.

remove portal servlet and configuration - no need for this if we are supporting auth tokens from authentication service.

include 2.4.3 upgrade scripts in the trunk (merged from branch)

remove d1_annotator servlet from web xml - not used anymore

Remove the "#none" href attribute from links in the MetacatUI metadata entry form.

Add classes and attributes to the object name and online distribution link elements in the MetacatUI theme.

• Use the cite tag for the MetacatUI skin citation
• Take out extra divs in the MetacatUI skin that are not necessary
• Add a placeholder for the package contents table in the MetacatUI skin
• Classify more of the HTML tags with their content type so MetacatUI can find content more efficiently...

Display text nodes in EML when the value is directly in the text node or in a <section> tag or in a <para> tag (in metacatui skin)

Add comments explaining limits on max_upload_size property.

Lower the file size limit to deal with max size of Integer issue.