Metacat

Add the warn level to d1_java_client classes.

Open links to the top-level orcid.org site in new tabs too

Add target="_blank" to ORCID links in the View Service for EML docs

Fixes https://projects.ecoinformatics.org/ecoinfo/issues/7220

Change mime type to text/plain

Change the mime type from application/xml to text/xml.

Increase eml-text.xsl's section header level to match with overall
document structure

More bug tweaks to eml-text.xsl

- Fix use of non-existent HTML5 tag 'emphasis' and use 'em' instead as
intended
- Add target=_default to links

Merge changes from 2.8 branch - added a display of "Role" to the eml-party.xsl stylesheet for Associated Parties

Relax the EML text XSLs rendering of ulinks

This makes all content inside a ulink show up inside the <a> tag in
the output. Before this change, if CDATA was present inside a ulink
element, it would be ignored because the XSL was only extracting the
citetitle's CDATA

Overhaul EML Text XSLT to support everything in the entire module

Major touchup work in ISO XSL

- Fixes numerous bugs involving ISO's bizarre use of nilReasons
- Fixes numerous bugs involving differences between the ISO workbook
and the schema
- Adds support for Polygons

Fix a bug in the eml party xslt

Change the mime type back to application/xml.

Change the mime type back to application/xml.

Change the mime type of those files.

Change the mime type.

add the script to upgrade the db to 2.8.5.

Tidy up ISO stylesheets. This is an set of iterative tweaks both to the
in-file formatting as well as a bit of small tweaks to how things work.

Simplify keyword thesaurus display

Showing the whole thesaurus for every keyword set is way too much info
and is impossible to display with a naive implementation.

Fix bug in abstract handling in ISO XSLT

Before this change, a missing abstract would still show up but just as
an empty box with on content. This should be fixed now.

Move Additional Info in the EML stylesheet to after the keyword sets

Show the additionalInfo under Data Usage Rights to reflect the additional info collected in the Registry

Add the view service.

Add the MNPackage configuration.

Remove the duplicated alternate identifier section.

It seemed to have been caused by a branch code merge.

Add support for alternateIdentifier system in EML stylesheet

Fix a bug in the conditional for the EML XSLT for alternateIdentifiers

Add the script to upgrade db to 2.8.4

Display the dc:source field from dublin core metadata in the onedcx-common stylesheet

Change the test metacat deployment directory.

Add the script to update the version to 2.8.3

Add the db upgrade from 2.8.1 to 2.8.2

Add two properties will be used in the dataone replication test.

Change the version to 2.9.0

Add the 'Collaborator' role to the list of roles in the EML Registry CGI.

refs https://github.com/NCEAS/metacatui/issues/78

Remove extra <table> HTML element that was causing rendering issues with the enumerated domain template

Add the method name and line number in the statement.

Fix broken links in taxonomy section of registry guide

Fix a typo that was preventing dateTime attributes from rendering fully

If EML physical/size/@unit isn't specified, assume its bytes

Previously, if the unit attribute wasn't set on an EML physical size
element, the size showed up as just the number with no units. The EML
spec says that, if unit is omitted, bytes is the assumed unit.

- Clean up isoroot selectors and comments. Use relative xpaths when possible
- Clean up the output of the ex module
- Misc whitespace/formatting fixes

Trigger MDQ when inserting or updating metadata documents. https://projects.ecoinformatics.org/ecoinfo/issues/7171 and https://github.com/NCEAS/mdqengine/issues/73

Clean up ISO stylesheet formatting

Change the default test replication server.

Start the basis for gmd:distributionInfo

Minor tweaks and code cleanup to ISO XSLT

- Renamed the folder once more to be more correct

Improve the EML XSLT's handling of ORCIDs as userIds

Add support in the EML XSLT for making ORCID userIds into links

Multiple changes to the ISO XSLT

- Renamed base folder from iso to iso19139
- Added a short_citation template for showing thesauri in tight places such as the keywords list
- Tweaked the geographic coverage output so the static maps render in Metacat UI

Added XSD files for the 1999 FGDC Biological Data Profile Schema.

Add servlet mappings for d1 base url.

Add new hash code of the solr schema after we added a new field prov_generated.

Continue work on ISO XSLTs

- We now have a template for CI_Citation
- I moved some templates into separate XSLTs
- Cleaned up overally structure/styling of translated output

Include the files that were totally supposed to go in the last commit

Continue work in ISO XSLT

- Tweak how extents are displayed
- Start adding support for GML Polygons
- Restructure EX module templates and clean them up a bit

Continue work on ISO XSLT

- Cleans up the root element to better match what we want in the end (looks like the EML XSLT)
- Switches a lot of calls to call-template over to apply-templates. I think this is a good idea because the ISO standards use XSD type equivalence to extend existing schemas. e.g., gmx:Anchors can show up when the gmd schema says only a gco:CharacterString should go there...

Improve output of ISO XSLT

Hook ISO XSLT into view service

Create first basic version of ISO 19115 XSL stylesheets

use "PLACEHOLDER" for annotation target rather than the actual attribute name value (for manual annotations added from spreadsheet).

Change the ldapweb.cgi script to use an additional property called email.contact which provides a contat email (particularly when email.sender is set to noreply@...). Update the skin configurations with this property, as well as the metacat.properties default.

Add the update script for db 2.7.2

Add the fgdc schemas which downloaded from https://www.fgdc.gov/metadata/

Show the annotation target under the attribute name

Move the "go back to editing" button to the top of the confirm page too.
Make sure all links in the confirm stage open up in a new window.
Make the "yes submit" button styled as the primary choice.

Move the "MultiSelector" JS from the entryForm.tmpl to the entryForm.js. This ensures that the JS will run after all the functions in entryForm.js are declared. This was causing JS bugs in the registry and metacatui.

Make sure all links in the registry form and registry guide open up in a new tab.

Give the EML title HTML container a distinct class to hide it in MetacatUI (rather than using jQuery to hide it in MetacatUI. This is faster.)

Merge changes from 2.7 branch

Update the trunk with the confirmData template based on the 2.6.0 tag.

Add the upgrade script for 2.7.1

add sample DCX document for debug comparison. https://redmine.dataone.org/issues/7829

Add the property to call the solr schema upgrade java code.

render temporal periods and single dates. https://redmine.dataone.org/issues/7686

surround onedcx metdata display in form-horizontal section for more consistent layout with other metadata standards. https://redmine.dataone.org/issues/7686

place bounding coordinates in controls-well. https://redmine.dataone.org/issues/7686

consolidate online access section. format xsl whitespace

Change the db upgrade script to 2.8.0

add rendering for onlink to FGDC xslt. https://redmine.dataone.org/issues/7747

add creators and online access sections for DCX. https://redmine.dataone.org/issues/7686

add first pass at DCX XSLT. https://redmine.dataone.org/issues/7686

merge from 2.6 branch: include multiple alternate identifiers in hidden form if there is an error that needs to be corrected and resubmitted.

Merge changes from the 2.6.0 release.

merge from 2.6 branch: add support for EML 2.1.1 to DC crosswalking for OAI provider. https://projects.ecoinformatics.org/ecoinfo/issues/7030

merge from 2.6 branch: add support for EML 2.1.1 in OAI-PMH provider. https://projects.ecoinformatics.org/ecoinfo/issues/7009

merge changes to accommodate multiple alternative identifiers into trunk from 2.6 branch.

Add two properteis which d1_libclient_java will use them for http client.

Merge minor registry changes from the 2.6 branch back to the trunk.

refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/107

use the noaa version.

Remove the directory which doesn't exit on noaa.

Remove the directory which is not in the noaa.

Change the version to 2.7.0 and add a upgrade sql script.

Layout the study area descriptors a bit better in a table as opposed to a div. This also accommodates the name_or_id attribute (as the Code column), whereas the div didn't handle it. Needs som work on the citation column.

refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/42

Add project-level rendering into the eml-dataset XSLT. Convert the older table-based layout to use the Bootstrap 2.x classes for labels and divs.

refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/42

Added a version of noaa to svn.
Note:
1. gml311 and gml211 is from the standard version.
2. the xlinks.xsd is base on the version of skye's. I added the simpleLink, extenededLink and et al.

Add a funding input textbox into the entry form (not hidden per Matt), and add the hidden inputs into the confirmData and genericResponse templates for maintaining state across stages.

refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/42

Add a new chechsum for the new solr schema.

comment out (duplicate) EML download link since it does not apply in the CN context and the same functionality exists elsewhere in the MetacatUI rendering. https://redmine.dataone.org/issues/7639

Removed the sepcified path for the ldap ca file.

Remove the bypass button.