merge from 2.6 branch: add support for EML 2.1.1 in OAI-PMH provider. https://projects.ecoinformatics.org/ecoinfo/issues/7009
merge changes to accommodate multiple alternative identifiers into trunk from 2.6 branch.
Add two properteis which d1_libclient_java will use them for http client.
Merge minor registry changes from the 2.6 branch back to the trunk.
refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/107
use the noaa version.
Remove the directory which doesn't exit on noaa.
Remove the directory which is not in the noaa.
Change the version to 2.7.0 and add a upgrade sql script.
Layout the study area descriptors a bit better in a table as opposed to a div. This also accommodates the name_or_id attribute (as the Code column), whereas the div didn't handle it. Needs som work on the citation column.
refs https://github.nceas.ucsb.edu/KNB/arctic-data/issues/42
Add project-level rendering into the eml-dataset XSLT. Convert the older table-based layout to use the Bootstrap 2.x classes for labels and divs.
Added a version of noaa to svn.Note: 1. gml311 and gml211 is from the standard version.2. the xlinks.xsd is base on the version of skye's. I added the simpleLink, extenededLink and et al.
Add a funding input textbox into the entry form (not hidden per Matt), and add the hidden inputs into the confirmData and genericResponse templates for maintaining state across stages.
Add a new chechsum for the new solr schema.
comment out (duplicate) EML download link since it does not apply in the CN context and the same functionality exists elsewhere in the MetacatUI rendering. https://redmine.dataone.org/issues/7639
Removed the sepcified path for the ldap ca file.
Remove the bypass button.
Add the help icons on the page.
Add the items for the ezid backup.
Change the label.
fixed a label issue.
Add a new property to show the status of configuration of the ezid service.
Add a page for configuring the ezid.
remove the password of the doi user.
comment out the party annotation-target - don't think we'll be using this anytime soon (had been for annotating with orcids)
Add a new property named application.readOnlyMode.
include expiration configuration option for NCEAS accounts to prevent errors during account registration. https://projects.ecoinformatics.org/ecoinfo/issues/6917
Set the metacat to 2.6.0 and add the db upgrade scripts.
merge jing's commit from the 2.5 branch to include the 2.5.1 upgrade utility in properties file.
Removed the jar file since it is replaced by the jar file from the maven.
merge from branch: use hash for latest solr schema
rollback to use entity/attribute id for the tab-pane (so it will work) and include new div id for the annotatable attribute section.
restructure attribute and party sections so that the annotatable div does not have DOM children.
Mrge from 2.5 branch: Clean up the admin and doc page styles, update all the screenshot images, and include a link to the MetacatUI Github
include index.tdb.directory property. https://redmine.dataone.org/issues/7442
Update the packageId attribute in EML documents on update. Never display the local docid in the rendered EML.
Add the "forward" value for the "dispatcher" in the filter mapping. So the proxy (using forward) and direct request will use the same filter.
Add a new version of this document from the svn trunk. The changes are all documentation.
Add v2 to the service.version list.
Add the schemas for ISO-119139/isotc211.object.
use v1 and v2 xsl as appropriate for rendering d1 types (object format list, mostly)
Add a new version of the schema.
Add the data schema from dataone svn trunk. It maybe needs to be updated in future.
Add a hash of a new index schema.
Move the dataset metadata label for metacatui EML
Mark the entity metadata sections in metacatui EML transformations
Changed the FGDC MetacatUI theme translation so that it displays nicely in MetacatUI and works correctly
Modified the dataone.nodeid from blank to urn:node:METACAT_TEST. Now the mn.updateSystemMetadata only allows be called on the authoritative node of a pid. In order to make junit test work, we need to have a value there.
remove portal servlet and configuration - no need for this if we are supporting auth tokens from authentication service.
include 2.4.3 upgrade scripts in the trunk (merged from branch)
remove d1_annotator servlet from web xml - not used anymore
Remove the "#none" href attribute from links in the MetacatUI metadata entry form.
Add classes and attributes to the object name and online distribution link elements in the MetacatUI theme.
Display text nodes in EML when the value is directly in the text node or in a <section> tag or in a <para> tag (in metacatui skin)
Add comments explaining limits on max_upload_size property.
Lower the file size limit to deal with max size of Integer issue.
Updated D1ResourceHandler to not hardcode a file size limit. This will allowlarge, multi-gigabyte files to be uploaded, but still needs testing. The limitis now drawn from the metacat.properties file. An alternative would be to inspectthe Content-Length header of the request and set the max to a value greater than the...
add Annotator Store implementation -- pass through to D1 API for the AnnotatorJS API
use getCookie action now that portal has different getToken action.
Merge changes in the 2.4 branch into the trunk for the ORNL Mercury schema support. References https://projects.ecoinformatics.org/ecoinfo/issues/6619.
This schema is maintained by Jim Green (jgreen@iiaweb.com) and Ranjeet Devarakonda (devarakondar@ornl.gov). The schema uses a subset of the FGDC 1998 CSDGM elements, along with custom elements specific to the Mercury Metadata web application. Support is included in Metacat for Coordinating Node operations in the DataONE network.
include schema.xml md5 checksum for 2.4.2 release.
[merge from 2.4 branch] use solr schema upgrader for 2.4.2 release -- need to replace the solr schema to include geohash fields
update documentation for trunk to use 2.5.0 release number
Merge change from 2.4 branch to trunk (removed some duplicated links)
Fixed issues for login and logout on Saeon skin:https://projects.ecoinformatics.org/ecoinfo/issues/6613'
M saeon/SaeonLogin.jspx
allow per-document reindexing to be initiated by any user (to support third-party annotations)
include type="party" attribute for the divs that contain contact information (for annotating with ORCIDs)
In the EML XSLT - Add classes to the entity details containers so they can be identified easily
add /token endpoint for annotatorJS/annotateIt.org integration. https://github.com/DataONEorg/sem-prov-design/issues/18
include resource="#xpointer(...)" attributes for sections that are potential targets for annotation. So far we have the various people (creator, contact, etc) and data table attributes. https://github.com/DataONEorg/sem-prov-design/issues/18
Replace the /u00A0 character encoding with space character instead since /u00A0 displays literally in browsers
comment out myproxy servlets. https://redmine.dataone.org/issues/5742
Fix XML validation errors in the metacatui confirmData template for the registry. Add a test script that submits multiple datasets to the registry.
add support for v2 DataONE API.
remove old EML jar -- datamanager.jar has the EMLParser now and is pulled in with maven.
use css changes from EML project to render a PDF that fits on a printed page during export. Note that this also changes the default skin slightly (for the better, we think). https://projects.ecoinformatics.org/ecoinfo/issues/6053
remove configxml.jar as the ConfigXML class is now included in the utilities library.
use maven for datamanager dependency now that EML project has been [partially] maven-ized.
use separate surName and givenNames to lookup ORCIDs.
change the hazelcast group name to be the default "metacat" instance so that the metacat-index tests pass without additional local configuration, at least when running a default metacat deployment.
Remove the attribute disable from the update button if it has been submitted.
Add the cn url.
Add the text field for the cn url.
recompile with java 1.6 for compatibility with our servers.
Check for undefined and null elements to avoid errors in IE 8 and earlier in the registry entry form JS
Close a <span> HTML tag in the entry form MetacatUI template to avoid errors in older browsers
refactor web service calls to bioportal and orcid outside of the annotator class. test with orcid sandbox server. include orcid uri for the annotations being generated (we can index these and drive our searches on these values down the road). related to this: https://projects.ecoinformatics.org/ecoinfo/issues/6423 and also some semtools tasks.
merge from trunk: these open layers resources were not committed!
Add a pisco test account.
use local release of OpenLayers api so that it works over https with our secure deployments (openlayers.org does not offer the api from their servers using https).
Change the loginForm attributes which is generated by the logout action.
Use the userManagement variable.
make the loginForm and logoutForm the onSubmit "false" and the method "post".
remove metacarta map layer -- their WMS service is no longer responding.
update to use 2.4.1 so the trunk has all artifacts for upgrades.
merge recent upgrade changes from 2.4 branch
Changed some of the font and stlyes of the metacat docs for easier reading and fixed a big where the metacat admin "configure" buttons were not working
Add the three Darwin Core schemas required by the Dryad Metadata Profile (via imports).
Add cached versions of the DataONE, Dryad, Dublin core, and Darwin Core schemas to Metacat. Remove schemaLocation attributes so that we rely on the local catalog and don't use (potentially changing) URL endpoints.
switch to ezid 1.0.0 release and pull from dev-testing.dataone.org Maven repo.