Removed the duplicated code to check the checksum in the replicate method since the method D1Node.create, which is called by the replicate method, has the mechanism.
Add some debug information.
Change MetacatHandler.generateOutputName() to use the SystemMetadata.fileName value when it is available. Needs testing.
refs https://projects.ecoinformatics.org/ecoinfo/issues/7187
Define location of the AWS binary so the tool works under CRON.
Modified backup script to improve efficiency.
Now, lists of metadata and data files that were last backed up is stored in the /var/metacat/metacat-backup folder, andthese are diffed with the current file lists to discover new files. These are then copied to AWS S3. The AWS...
Add the code to filter out the pids with white spaces in the query.
Add backup script to copy files to Amazon S3.
Make sure it is same as branch 2.8 except the mdq stuff
Still use syncFailed.getPid to get identifier in the syncFailed method.
Fixed typos in the vairable name.
In the synchronizationFailed method, use syncExcpetion.getIdentifier method to try before the obsoleted method getPid.
Change the version to 2.9.0
Add the script to upgrade the db to 2.9.0
Move a statement e.printStactTrace to the logMetacat.error method.
Add the 'Collaborator' role to the list of roles in the EML Registry CGI.
refs https://github.com/NCEAS/metacatui/issues/78
In the expandRightHolder method, we don't use the parameter count=-1 to query the cn. Now we use count=200 and will use the page query to query again if it is necessary.
Add the debug statement.
Add more debug statement on cn.create method.
extract EML creator[s] and use those names or organizations when registering DOI with EZID. https://github.nceas.ucsb.edu/KNB/arctic-data/issues/143
In the archive method, add a new mechanism to check if the local id is in the xml_revision table if it is not in the xml_documents table.
Add a new method to determine if a docid and rev is in the xml_revision table.
Give the users having change-permission to archive an object which is from a v1 node.
Check the change of the access rules on data objects only when we need to write access rules base on the access part of the eml document.
Ensure XML run response from quality engine. Use mock http request to ensure correct save behavior of the resulting run. https://projects.ecoinformatics.org/ecoinfo/issues/7171 and https://github.com/NCEAS/mdqengine/issues/73
Trigger MDQ when inserting or updating metadata documents. https://projects.ecoinformatics.org/ecoinfo/issues/7171 and https://github.com/NCEAS/mdqengine/issues/73
Fixed a typo.
The indexall action will be run on another thread.
Change the param from the class field to a local variable.
Remove the inadvertant UTF-8 BOM from the beginning of the file, and initialize the contact variable properly (again).
Change the condition that remove identifier from the identifier table in the method removeSystemMetaAndIdentifier.
Add the pid in a debug statement.
Add the sql to register schema files for the format id fgdc-st-001.1-1999.
Add the code to check if the object does exist in the create method. If it doesn't, the system metadata and identifier will be removed.
Change the calling code when the method insertOrUpdateDocument signature is changed.
Add methods to determine if the object does exist with the given local id.
Add some performace debug information.
Add methods to check if there are circular obsoletes/obsoletedBy chains in the mn.updateSystemmetadata method.
Don't share the same executor in the two classes.
Call the cn.synchronize method asynchronously in the mn.updateSystemmetadata method.
Add the version information on a log statement.
Add the version information in a log statement.
Add the class to upgrade the solr schema.
Add a script to upgrade the db to 2.8.1
Change the version to 2.8.1
Add a smart test when we set the file name for the header of "content-deposition":When the id doesn't end with the file extention, we set the file to be id+extension.
To set the content-deposition header, the cn will look the file name in the system metadata first.
Fix issue in getDefaultReplicationPolicy.
Previously, under some circumstances, a ReplicationPolicy was created but was missing the optional replicationAllowed and numReplicas attributes. These are critical to the policy, so ensure they are set to sensible defaults even when property parsing errors and other issues might skip them. Added a test of this method, but I note that other methods in SystemMetadataFactory do not have unit tests and should be added if they are modified.
Use the "MNRead" to replace "MNStorage" to determine the version of the MN.
Change an exception to more appropriate exception.
Add more checks to avoid a null exception.
Add more debug statement for deleting.
Add some information about pid on the log statement.
Change the ldapweb.cgi script to use an additional property called email.contact which provides a contat email (particularly when email.sender is set to noreply@...). Update the skin configurations with this property, as well as the metacat.properties default.
Add a comment.
Removing xml_access table records now is in the removing the pid from hazelcast. So remove the dupicated code.
Check if the object and sysmeta are null before to get the inputstream object.
Clear the code for the method handleInsertOrUpdate.
The deleteSystemmetadata method will delete the records on xml_access as well.
Add the identifier information in the exception when users try to change the access section but they don't have all permission.
Add the guid information in the sax exception when users try to update the access part but they don't have all permission.
Expand the rights holder if it is a group.
Add the code to expand the rights holder if it is a group.
Add more log information.
Add a note to notify users that the reindex action is asynchronized.
Made the class implements the interface LexicalHandler.
Add code to check if a dtd is registered when the parser processes the dtd part.
Fixed a bug that the public id can't be assigned.
Change the debug level from debug to trace.
Change some debug statments from debug to trace.
Down the debug level from debug to trace.
Removed a unused parameter - formatId from method writeReplication.
Add the feature to support the noNamespaceSchemalLocation and refactory the code.
Add the code to throw an exception to tell users that the namespace or format id was not registered in Metacat.
Add the methods to figure out the schema location base on namespace, format id or no-namespace-schema-location uri.
Add a new constant for no-namespace schemas.
Add a method to get the type.
Add a method to get the type of the schema.
Add a new class represent a schema without a namespace.
Change the type for the no-name-namespace schema from Schema to NoNamespaceSchema.
Add a SAX parser to determine the namespace of a xml object. It only parses the root element, then stops.
Put the formatid and nonamespace_schema_location into one record for fgdc.
Add the code to create a new column on xml_catalog table.Register the nonamespace format id or uni on the xml_catalog table.
Add the script to upgrade db to version 2.7.2
Disable the feature of downloading external schemas.
Change the log information a little bit.
use the new rules to validate an xml object base on dtds.
Every time when we modified the metacat.properties file through the PropertyService, the Setting class will be updated as well. Otherwise, the values on the Setting class are still the old one.
Added the double quotes on the file name of the http header "content-deposition". This can handle the special characters on the file name.https://projects.ecoinformatics.org/ecoinfo/issues/7084
handle redirecting Metacat "shortcut" URLs when docid is given with and without revision. https://projects.ecoinformatics.org/ecoinfo/issues/7063
Merge changes from 2.7 branch
Add the update 2.7.1 sql to the trunk.
Replaced the JiBXException by MarshallingException.
Remove template variable assignments that weren't removed in the merge from the 2.6.0 branch to 2.7.0.
Add the code to upgrade the solr schema.