Metacat

Created new AuthStub class to always authenticate.

Implement stop method in services. Stop all services when shutting down metacat. This primarily keeps scheduler from hanging with open threads.

Adjust width of workflow resultset column so download link shows up

Catch exception that was leaving shape files open. Roll back transaction in this case.

Catch exception when schema exists in db but not on disk. Try to get the schema before throwing exception

remove this file. This is now handled in db update scripts.

Beef up search. Change pdf report element name.

Add upgrade scripts for 1.9.2 (scheduler tables)

Handle extracting a docid from a urn (lsid) during a read action

Update utilities tag to 1_0_1_RC1

Beef up comments

kepler workflow execution engine client classes

Format file

Added so axis call to workflow engine will work (attachments support)

Workflow scheduler and archiving fixes for TPC workflow engine

Updates primarily for final workflow and run xml metadata design

remove duplicate jar - same version as existing one

axis-ant (1.3) support in metacat

moved axis-ant.jar to lsid_lib

axis-ant (1.3) support in metacat (may need additional jars)

force ecogrid to use SVN for checkouts, currently using trunk (but may swap to a tag in the near future)

Added generic scheduler and workflow scheduling functionality.

Add svn ant jars and revert quartz jar back to 1.5.2 for compatibility issues.

Added tpc workflow search and browse capabilities

Add scheduler and workflow schedule functionality

Add scheduler and workflow schedule functionality

Add archival read funtionality (jar/kar/war files)

Added tpc workflow search and browse capabilities

Added tpc workflow search and browse capabilities

add ssl to yum install

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
1. Refactor the 'eml' metadataPrefix into a distinct metadataPrefix value (and corresponding crosswalk class) for each EML version:
eml-2.0.0, eml-2.0.1, eml-2.1.0. (In recent VTC discussion, we decided not to add support for the older 'beta' versions of EML 2.0.0.)...

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
1. When building the Metacat OAI-PMH catalog, modify the database query to search only for documents with public read access.
2. Change syntax used for identifiers in the repository to LSID format instead of using a URL to a specific repository....

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
Add support for request parameter "metadataPrefix=eml". This returns EML 2.1.0 records in an OAI-PMH format. EML 2.0.0 and 2.0.1 documents are first transformed to EML 2.1.0 using the eml201to210.xsl stylesheet that is packaged with the EML Utilities.

Begin development for Bug 3835: Design and implement OAI-PMH compliant harvest subsystem

fixed TOC page numbers.

removed old files.

pdf of Admin Guide

checked paging and made a couple small fixes.

Removed old versions of guide and outline.

Renamed Admin Guide to remove Draft from file name. Also made changes to LSID section.

In AuthSession, I've modified the formatOutput() method to include both the email and organization values found in the userInfo array. On successful login(), this changes the returned xml to include <email> and <organization> elements if they exist in the userInfo array. This information is useful to web client applications that need to show login status beyond just the users full name.

Added LSID description to guide.

include IO::Socket:SSL requirement (needed for LDAP TLS support with ldapweb.cgi)

Add redirect to skins directory.

include the "mock up" search fields

Removed CVS and added LSID installation instructions (untested).

added title page and updated replication instructions.

Incorporated Mike's feedback

word 97 version

Added this temporarily because I updated an old version of the doc

Add ssl virtualhost. Change non-ssl to work with ssl.

Updated Replication instructions

updating draft.

Fix reference to old common/eml-2.0.1 directory

Fix reference to old common/eml-2.0.1 directory

working on incorporating feedback

Further fixes to handle mixed-file uploads:
- set the fileCount object based on upCount existing files
- use ucount only if it exists; remove debugging'
- the entry form javascript now correctly tracks the file numbers, and can be relied on instead of using upCount...

Update load testing scripts

This file will be autogenerated with a script and doesn't need to be checked into svn

Redid outline to be 2/3 levels/fit on one page.

Add load test documentation

Update load test code

Display helpful error message when user lacks permissions to edit a document, supress the 'use Morpho' message (closes Bug #3928)

fix bug #3950, make additional uploads stick when modifying a document

Change confirm page text to make it seem less like a receipt of completed information, which has confused a few NCEAS participants. Lower the visual impact of the horizontal rules.

Insert and squery load tests

Three small fixes:
- 'salutation' was misspelled and wasn't picked up correctly in document modificiation
- keyword handling wasn't setting the thesaurus correctly
- check against the full list of moderators for the ACL validation

Matt's comments on Metacat Admin guide.

Enable uploads for the default KNB skin. With the improvements to infrastructure Mike's done, this should work like a charm

do not duplicate the true/false indicators for the metadata vocab/value matrix

use recordNum instead of studentId for transposed data

use "recordNum" rather than "studentId"

omit studentId values from normal resultset
strip the html tags from the qti elements for both return formats

Removed spatial coverage requirement for KNB skin

disable output escaping for CDATA html elements

split vocab/value into two columns (can easily switch back to single column)

Adding back fix for editing documents with multiple keywords, closing #3929

question choices and metadata selection controlled by a counter - can easily increase the number returned...note: probably need to make this a parameter for user or be intelligent about figuring what the widest question is (ie: does it have 5,10,20! metadata entries?)

include short answer prompts in the resultset view

include prompt for both multiple choice and short answer questions when downloading

omit the demographic data - this is not well-defined for the prototype

omit duplicate values in the for the standard metadata header section (columns for each question)

omit the metadata vocab/values from the normal header section since they will be used in the "matrix-style" header section

added more docs

add vocab name/value matrix above data rows.
currently there is only a single column for the concatenated value of the vocab name + "/" + vocab value. it's so much easier!

reduce the extra whitespace on the transpose

hide the "transpose" checkbox except when on the data cart page

use name attributes for selection entity-attributes.
note: this is still a static version of which question-level metadata is being included in the resultset

only "correct" non-null values

allow both text nodes and cdata nodes to provide content for document data package values (FIRST)

include qPrompt and qChoice
need to quote the csv so that commas in the question text do not throw it off

Now the metadata attributes show as rows above the data.
very close!
todo: special handling for thesaurus (ie NBII/Bloom) metadata fields

pivot constrained to a List of specific attributes: studentId (record number), score, response.
This is the "lower half" of the return set (data).
now: on to the metadata header rows

Update version to 1.9.1. Add nrs ldap properties to configuration.

Now doing the dataquery/download in the FIRST skin's jsp rather than embedded in the Metacat servlet.
TODO: implement the very-custom data return format agreed upon by the FIRST team

remove DataTranspose from core metacat - only used in FIRST skin for this 1.9.1 release

Include hack for UCNRS organization properties.

add LDAP base to NRS skin properties

- build up username using base if username isn't fully qualified (e.g. cn=Manager,dc=ecoinformatics,dc=org)
- additional debugging statements for changePassword

add UCNRS LDAP properties