Metacat

In order to sync up with DataONE 0.6.1 changes, I'm backing out ObjectFormatService changes temporarily in Metacat. Most functionality will be rolled back in using the DataONE 0.6.2 tag, but some methods in ObjectFormatService (such as getListFromDisk()) will be moved into d1_libclient_java.

Added in the 0.6.0 version of the d1_common_java library that has object format changes.

Changes in the DataONE ObjectFormat class deprecate the convert() method, and we're now using Metacat's ObjectFormatService to look up object format attributes. The following changes replace ObjectFormat.convert() with ObjectFormatService.getFormat() in several classes....

Include the DataONE 0.6.0 type schema in the SQL schema and DTD loader script.

Updating the cached object format list to the new DataONE namespace including the 'ns' domain component.

add additionalMetadata/metadata/spatialResolution/value and additionalMetadata/metadata/spatialResolution/units for indexing. Also add missing comma behind additionalMetadata/moderatorComment

use update method to update the mapping between local and guid (d1) when we get a force replication request that is an "update

remove entity encoded characters that were garbled in browser (sanparks patch)

updating CrudServiceTest with better exception handling (more specific) to match refactored CrudService.java class

generateMissingSystemMetadata was swallowing Exceptions instead of throwing. Refactored so that specific exceptions are thrown, affecting [create/update]SystemMetadata methods, too.