Ecoinformatics Redmine

02/05/2008

01:40 PM Kepler Bug #3131: R is not added to the path

You should not need to add R to the path if it is installed with the installer. If the R.zip is installed inside $KEP... Dan Higgins

02/01/2008

03:59 PM Kepler Bug #3119: Need Installer shortcuts for Windows

Information is in IzPack documentation on shortcuts.
Also see as an example
IzPack\src\dist-files\shortcutSpec.xml Dan Higgins

10:58 AM Kepler Bug #3119 (Resolved): Need Installer shortcuts for Windows

Shortcuts for the IzPack installer system have not yet been implemented, although it is possible to create such short... Dan Higgins

11:02 AM Kepler Bug #3052: Installer crashes with EXC_BAD_ACCESS

This bug is now invalid with the use of the new IzPack installer system Dan Higgins

10:49 AM Kepler Bug #1334: need installer for kepler

IzPack installer system that is open-source and uses ant has been implemented and is in build.xml ant file.
Thus, cl... Dan Higgins

01/31/2008

02:31 PM Kepler Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh

crawl will check in fixes after RC1

Dan Higgins Dan Higgins

01:04 PM Kepler Bug #3115 (Resolved): Need to check Kepler for memory leaks

Need to do some testing to see if Kepler memory leaks occur (i.e. does memory use increase even when workflows closed... Dan Higgins

01:01 PM Kepler Bug #3108: ENM GARP Baseline 3-Actor GARP - Browser Display demo fails with NameDuplication: convertTo?

I cannot figure out just what workflows the errors reported correspond to. e.g 'Baseline 3-Actor GARP -Browser Displa... Dan Higgins

01/29/2008

10:59 AM Kepler Bug #3106: Out of memory while opening all demos, is -Xss5m or SVG the problem?

As I remember, the -Xss5m switch was included because setting the stack memory this way was needed to insure that sev... Dan Higgins

01/24/2008

03:57 PM Kepler Bug #3102: Inclusion of R executable for Mac and Linux ?

duplicate
*** This bug has been marked as a duplicate of bug 3101 *** Dan Higgins

03:38 PM Kepler Bug #3102 (Resolved): Inclusion of R executable for Mac and Linux ?

We included a set of R executables for Windows as of beta3 and plan on doing so also for RC1. However, we do not incl... Dan Higgins

03:57 PM Kepler Bug #3101: Inclusion of R executable for Mac and Linux ?

*** Bug 3102 has been marked as a duplicate of this bug. *** Dan Higgins

03:34 PM Kepler Bug #3101 (Resolved): Inclusion of R executable for Mac and Linux ?

We included a set of R executables for Windows as of beta3 and plan on doing so also for RC1. However, we do not incl... Dan Higgins

01/23/2008

03:47 PM Kepler Bug #1334: need installer for kepler

An open source installer package is made up of several packages, especially for use on Windows OSs. The various steps... Dan Higgins

01:04 PM Kepler Bug #3083: Need sample CommandLine workflows for Windows

Discovered the the problem could be reproduced when kepler was launched from kepler.bat or kepler.sh. Using the comma... Dan Higgins

11:11 AM Kepler Bug #3083: Need sample CommandLine workflows for Windows

Works for me under Windows and MacOSX Dan Higgins

12:14 PM Kepler Bug #3098: Cannot drag SampleDelay actor onto canvas

Dragging SampleDelay actor works for me under Windows with no error message at least immediately after startup Dan Higgins

12:14 PM Kepler Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh

ClassPathHacker is the name given by the author to his class for dynamic classpath additions. Using the authors choic... Dan Higgins

10:57 AM Kepler Bug #3090: ASC2RAWTest demo workflow error

Cleaned up paths and changed the datasource to DirectoryListing. Workflow now executes on multiple platforms Dan Higgins

10:03 AM Kepler Bug #3092: sampling_occurrenceData_ R.xml demo workflow

changed file path to use propert("KEPLER") for cross platform comaptibility Dan Higgins

01/22/2008

03:54 PM Kepler Bug #3086: Error with kepler20080122.zip version (PTII?)

Problem now fixed with updated PTII Dan Higgins

02:20 PM Kepler Bug #3086: Error with kepler20080122.zip version (PTII?)

There was a change in diva.canvas.BasicZList.java (in PTII) on Jan 22 that is the apparent cause.
'throws NoSuchEleme... Dan Higgins

01:43 PM Kepler Bug #3086 (Resolved): Error with kepler20080122.zip version (PTII?)

The nightly zipped version (kepler20080122) ends up having a recurring error shown in the terminal when the cursor is... Dan Higgins

03:53 PM Kepler Bug #3083: Need sample CommandLine workflows for Windows

Two new example CommandLine workflows added to $KEPLER/demos/getting-started. Dan Higgins

11:29 AM Kepler Bug #3083 (Resolved): Need sample CommandLine workflows for Windows

We need some simple examples of how to use the CommandLine actors especially for Windows systems. These should be in ... Dan Higgins

11:22 AM Kepler Bug #1334: need installer for kepler

Currently, the plan is to use the open source software Izpack and Launch4J for the next Kepler release. (also JarBund... Dan Higgins

01/18/2008

04:08 PM Kepler Bug #3078 (Resolved): No documentation for the 'SSH to Execute' actor

No documentation appear for the 'SSH to Execute' actor (org.sdm.spa.Ssh2Exec) Dan Higgins

01:39 PM Kepler Bug #3077: Querybuilder: condition "operator" and "criteria" are not being saved

See bug #3076 Dan Higgins

11:07 AM Kepler Bug #3076 (Resolved): Need to hit 'Return" key to enter a Criteria in QueryBuilder

You must hit the return key to force an entry in the Criteria column of the QueryBuilder. If you just enter the crite... Dan Higgins

01/17/2008

02:28 PM Kepler Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost

Problems can be seen if one follows this sequence:
1) Create a customized RExpression actor called Test1. Add to libr... Dan Higgins

12:59 PM Kepler Bug #3075: Fold Top,java file in $KEPLER/src/exp/ dir into Ptolemy src

There is now a StringAttribute that set the default File|Open directory. So this file should be ready to move to PTII... Dan Higgins

01/16/2008

03:59 PM Kepler Bug #3075 (Resolved): Fold Top,java file in $KEPLER/src/exp/ dir into Ptolemy src

Getting the FILE|Open menu to initially point to the $KEPLER/demos directory required a change to the PTII ptolemy/gu... Dan Higgins

03:58 PM Kepler Bug #2935: MetadataSource actor has no documentation

Documentation added to kar file moml Dan Higgins

03:48 PM Kepler Bug #3074 (Resolved): Code library installation issues

There are several issues with compiled code libraries (*.dll, *.so, *.dylib files) and where they must be located. Th... Dan Higgins

02:23 PM Kepler Bug #3026: Actor documentation does not appear in older workflows

This has been fixed in many of the GettingStarted demos but not in all the workflows in the demos directory. Dan Higgins

02:21 PM Kepler Bug #2914: Broken link on a web page

Note that missing doc is on Ilkay's server Dan Higgins

02:02 PM Kepler Bug #2990: file|open dialog should open in workflows directory

File|Open now initially opens into the $KEPLER/demos directory and remembers where the last location was (until shut-... Dan Higgins

01:22 PM Kepler Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken

Comment #3 about the Ptolemy links is certainly valid. There is the issue about making sure all the Ptolemy example w... Dan Higgins

12:01 PM Kepler Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken

The broken link was removed from the intro page. Dan Higgins

10:50 AM Kepler Bug #3055: DarwinCoreDatasource actor does not work in wit output 'As Field'

As Field and As Row setting now iterate through all the rows of the data Dan Higgins

01/15/2008

07:54 PM Kepler Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost

Some preliminary tests indicated that the indicated problems occur when a second actor is added, after the first acto... Dan Higgins

02:44 PM Kepler Bug #2833: 'Open' problem with new DarwinCoreDataSource actor

Data is now downloaded when actor is first dragged to the work area, allowing access to the query builder Dan Higgins

01/11/2008

03:11 PM Kepler Bug #3063: CommandLineExec actor does not generate Exit code

Fixed the code so that it does return a '1' on the exitCode port when there is no error in executing the Command Line... Dan Higgins

01:41 PM Kepler Bug #3063 (Resolved): CommandLineExec actor does not generate Exit code

Supposedly, the CommandLineExec actor will generate a '1' on the exitCode output when the execution of the command li... Dan Higgins

01:02 PM Kepler Bug #3062 (New): Need ASC grid Utilities actor

Currently there are actors (developed for the ENM example) for working with ASC grids. Such spatial grid actors allow... Dan Higgins

12:06 PM Kepler Bug #3061 (Resolved): Need IPCC data by month

The ClimateFileProcessor and ClimateChangeFileProcessor actors are custom actors for reading IPCC climate data. The d... Dan Higgins

11:37 AM Kepler Bug #3056: unable to print output of Display actor

Both the Display window and the Text Editor have a 'Print...' menu item but it does not appear to do anything! Note t... Dan Higgins