Ecoinformatics Redmine

12/20/2011

11:57 AM Metacat Bug #5567: Click the schedule button on sankparks skin got an blank page

In scheduleWorkflowRun.jsp file, it has code like:
String karId = LSIDUtil.getDocId(karLsid, false);
PermissionContro... Jing Tao

11:52 AM Metacat Bug #5568 (Resolved): Get an exception during startup metacat

I got an exception when i started metacat. However, it seems that metacat still can work.
SEVERE: /127.0.0.1:570... Jing Tao

12/15/2011

10:31 AM Metacat Bug #5567 (Resolved): Click the schedule button on sankparks skin got an blank page

Click TPC worklfow link on the sanparks skin, user will get a list of workflows. Every workflow has three associated ... Jing Tao

12/13/2011

04:43 PM Metacat Bug #5563: Kepler can't get search result from metacat 2.0.0

It turned out that the ecogrid tag (1.2.2.rc4) which the trunk used has wrong version of ecogridToPathquery.xsl. The ... Jing Tao

11:07 AM Metacat Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin

Now the cache key is using populated string with parameter values rather than just "?". It is working. Jing Tao

10:19 AM Metacat Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin

Yeah.
this is the way i am doing :) Jing Tao

12/12/2011

04:48 PM Metacat Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin

I like main page still keeping to use Java login. So user can do uploading data, schedule workflow et al without inst... Jing Tao

11:00 AM Metacat Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin

And the login/logout action on the home page seems not affect the login status on the "Register Data" at all. Jing Tao

12/09/2011

04:40 PM Metacat Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin

in the cache system, we use the combination of the selection and extended query as the key to store the cache result.... Jing Tao

04:05 PM Metacat Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin

After restarting tomcat, i ran the two queries on the dev skin. The second one is from cache. This is wrong since the... Jing Tao

04:29 PM Metacat Bug #5534: Replication log somehow doesn't work.

Ben: after you change the debug level, the replication log will go to catalina.out or the metacatreplication.log file... Jing Tao

12/08/2011

02:44 PM Metacat Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin

No, it is not. I haven't update your code yet.
I figured it out somehow the search result was cached even the querie... Jing Tao

12/07/2011

02:42 PM Metacat Bug #5566 (Resolved): Click View Run link get 0 result if user doesn't login on the sanparks skin

On the sanparks skin, if you click the TPC workflows link, you will get a list of workflows. There are three actions ... Jing Tao

01:12 PM Metacat Bug #5544: the footer of the output page after clicking TPC status/workflow can't be read on Sanparks skin

It turns out that the TPC workflow/status use another set of css and jsp files. I use the the way of home page to rep... Jing Tao

09:41 AM Kepler Bug #5444: Kepler can't run workflow if two instances exist at same time

Hrrm. I couldn't reproduce the bug dragging the sdf director this time when my workflow run engine (embedded a report... Jing Tao

12/06/2011

04:23 PM Kepler Bug #5564: dragging sdf director to the canvas causes exception

It turns out that i have a another kepler running at my workflow run engine. When i shut it down, the error has gone. Jing Tao

04:08 PM Kepler Bug #5564 (Resolved): dragging sdf director to the canvas causes exception

I searched sdf director and got it on the left panel. Then I tried to drag it to the canvas, but i got the exception:... Jing Tao

03:48 PM Metacat Bug #5563 (Resolved): Kepler can't get search result from metacat 2.0.0

I used kepler 2.3 to do a % query against a metacat which was built from the trunk. It didn't show any result. Actual... Jing Tao

12/05/2011

09:02 AM Metacat Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin

Hi, Ben:
I just tried and the sql error has gone. Thanks!
However, it seems that all worklfow and run kar files are... Jing Tao

12/02/2011

04:23 PM Metacat Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin

The parameterValues is:
[karEntry/karEntryAttributes/tpcStatus, mainAttributes/lsid, karEntry/karEntryAttributes/Name... Jing Tao

04:22 PM Metacat Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin

The sql statement is:
select xml_nodes.docid, xml_index.path, xml_nodes.nodedata, xml_nodes.parentnodeid, xml_nodes.... Jing Tao

04:21 PM Metacat Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin

The pathquery doesn't work:
<pathquery version='1.2'><returndoctype>http://www.kepler-project.org/kar-2.0.0</returndo... Jing Tao

04:19 PM Metacat Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin

Okay. It turned out the query on comment 2 does work. Jing Tao

03:39 PM Metacat Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin

i added a printStatckTrace statement and it gave me this:
at org.postgresql.core.v3.SimpleParameterList.bind(SimplePa... Jing Tao

03:36 PM Metacat Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin

actually, it is not only for the sanpark skin. This query will cause same issue:
<?xml version="1.0"?>
<pathquery ver... Jing Tao

10:31 AM Metacat Bug #5561 (Resolved): Got a SQL error when click TPC workflows or TPC link on sanparks skin

Clicked TPC status, I saw:
knb 20111202-10:30:51: [ERROR]: DBQuery.createResultDocument - SQL Error: The column in... Jing Tao

11:23 AM Metacat Bug #5562 (Resolved): Got an NPE when upgrade db from 1.9.5 to 2.0.0

knb 20111202-11:20:14: [ERROR]: SkinsAdmin.configureSkins - Could not find properties for skin: semtools [edu.ucsb.nc... Jing Tao

12/01/2011

04:34 PM Metacat Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin

If you login on the sanparks home page, you will get the login form when you click Register Data link. It seems that ... Jing Tao

03:43 PM Metacat Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).

Use accessBlock parameter on setaccess action to replace the original access rules by the new access rules. The new a... Jing Tao

09:20 AM Kepler Bug #5486: Need a mechanism to tell the user the information about setup the scheduler and workflow run engine

Yes. this one is done. User will be notified to set up the scheduler and the workflow run engine when they click the ... Jing Tao

11/29/2011

09:46 AM Metacat Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).

reopen this bug since ben added a comment on bug 5553:
There is currently a method in Metacat's access API that allo... Jing Tao

09:38 AM Metacat Bug #5553: setaccess action may have deleting access rule functionality

Sounds like we can use it. However, we have to parse the returned result of action=getaccesscontrol in order to prese... Jing Tao

11/28/2011

04:53 PM Metacat Bug #5553: setaccess action may have deleting access rule functionality

When this bug is fixed, we should reopen the bug 5551:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5551 Jing Tao

04:53 PM Metacat Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).

Now we had temporary solution for set/revoke public readable access:
user can grant public access to a document, then... Jing Tao

02:36 PM Metacat Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).

For the issue on comment 4, I found the clientViewBean object wasn't set sesssion id in ClientViewHelper.java. After ... Jing Tao

11/23/2011

02:55 PM Metacat Bug #5553 (New): setaccess action may have deleting access rule functionality

Currently, setaccess action can only add access rules to the metacat. There is a limitation.
Sometimes, we want to... Jing Tao

02:48 PM Metacat Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).

Also i noticed after set the access, the delete, update and set access button disappeared. Only download button can b... Jing Tao

02:36 PM Metacat Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).

Since "setaccess" action can add access rules, this will cause problem.
Since the documents' allow rules for public r... Jing Tao

02:23 PM Metacat Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).

To a none-public readable document, if we click the set access button with the checked public read check box, the doc... Jing Tao

01:59 PM Metacat Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).

The kepler_kepler_21 is a FGDC document with the public readable access rule. Here is the record on xml_access:
keple... Jing Tao

11:09 AM Metacat Bug #5551 (Resolved): Set public access button on the FGDC document display page doesn't work (on sanparks skin).

When I tried to grant a public readable access to a nonpublic readable document, i got an error:
User public does n... Jing Tao

11:00 AM Metacat Bug #5530: Sanparks skin shows update and delete action when user public reads a FGDC package

Ben:
Okay. This is the current behavior. I am going to close the bug. Jing Tao

11/22/2011

05:10 PM Metacat Bug #5530: Sanparks skin shows update and delete action when user public reads a FGDC package

If fgdc-root.xsl, it has the control to display the buttons or not. The control is the parameter "enableFGDCediting".... Jing Tao

10:29 AM Kepler Bug #5290: originModule not always set

For workflow-scheduler-gui module, i changed to use overwrite approach adding the preference tabs. This approach woul... Jing Tao

11/21/2011

02:22 PM Metacat Bug #5548 (New): Replace COS Mime multipart library

Here is a comment from Matt in bug 5543:
The COS Mime multipart library is incredibly old, and we should
seriousl... Jing Tao

02:20 PM Metacat Bug #5543: Can't upload a FGDC metadata file with a data file in SANParks skin

Ben committed a new version of cos.jar file and modified the MetacatClient.java to handle the file size being -1. In ... Jing Tao

10:17 AM Metacat Bug #5547 (New): Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin

When you click "Register Data" tab on Sanparks skin, it will show a login form if you haven't login. However, it will... Jing Tao