Ecoinformatics Redmine

03/15/2013

03:14 PM Morpho Bug #5888: Couldn't log in as a NCEAS account in Morpho

reverted ECP client to use OpenSAML 2.5.1 instead of 3.0-SNAPSHOT because they'd moved to Java 7 and were not plannin... ben leinfelder

12:18 PM Metacat Bug #5513: add support for DOI identifiers from EZID

Now using Title from EML (dataset/title element) for those objects.
Looking up full name from CN using the SM.rightsH... ben leinfelder

03/13/2013

09:39 AM Metacat Bug #5513: add support for DOI identifiers from EZID

Current status (3/13/2013):
-DOIs are minted using configured account/shoulder using MN.generateIdentifier(). EZID ha... ben leinfelder

03/11/2013

03:28 PM Metacat Bug #5755: Include EZID api library in Metacat for registering DOIs.

Added baseUrl parameter to constructor to allow use of testing EZID servers. Now building with hudson as well: http:/... ben leinfelder

03/09/2013

09:32 AM Morpho Bug #5889: Update documentation and installers to require Java 7

Actually, I decided to downgrade OpenSAML to the stable released version of 2.5.1 which does not require Java 7. The ... ben leinfelder

03/08/2013

04:01 PM Morpho Bug #5889 (Resolved): Update documentation and installers to require Java 7

ECP is using OpenSAML 3.0 that is now requiring Java 7. ben leinfelder

03/04/2013

05:10 PM Morpho Bug #5860: When morpho saves a network data package to local, the system metadata may contain id (obsoletes) which doesn't exist

Jing and I talked about a related issue today and decided that we CAN leave the <obsoletes> values in local system me... ben leinfelder

05:06 PM Morpho Bug #5799: publish using DOI feature

Decided to include this in 2.0.0 release since the site review deadline has already passed. ben leinfelder

05:04 PM Morpho Bug #5886 (Resolved): Rework AccessPolicy and ReplicationPolicy editing

1. Move "Edit XXX Policy..." from the Documentation menu into File menu.
2. Add "Inherit from package" checkbox to t... ben leinfelder

04:59 PM Metacat Bug #5821: Allow certificate-based Metacat administration

move to Metacat product ben leinfelder

02/27/2013

11:54 AM Morpho Bug #5885: Upgrading EML version causes access policy to be lost

Looks good - thanks, Jing! ben leinfelder

09:19 AM Morpho Bug #5885: Upgrading EML version causes access policy to be lost

Here is an example EML 2.0.1 file that has an accessPolicy set in SystemMetadata. When I open it by id in Morpho (aft... ben leinfelder

08:58 AM Morpho Bug #5885: Upgrading EML version causes access policy to be lost

My hunch is that the original SystemMetadata (from the MN) is discarded during the upgrade process and new SystemMeta... ben leinfelder

02/26/2013

10:21 PM Morpho Bug #5885 (Resolved): Upgrading EML version causes access policy to be lost

Matt saved a DataONE package to the MN using R, but the EML was 2.0.1 and had no access rules in it. The SystemMetada... ben leinfelder

10:28 AM Metacat Bug #5753: Implement mn.generateIdentifier()

Current feature set (UUID) is complete. For DOI/EZID support, see related bug: #5513 ben leinfelder

10:17 AM Metacat Bug #5753: Implement mn.generateIdentifier()

Metacat 2.0.6 now supports UUID (as it should have from the beginning). ben leinfelder

02/25/2013

03:58 PM Morpho Bug #5881: How can we change the access policy for the resource map document

Now saving the ORE systemMetadata changes locally when setting access policy and replication policy. ben leinfelder

02:55 PM Morpho Bug #5881: How can we change the access policy for the resource map document

I hadn't written code to do that since I thought no one would ever see it, but if we save a local package to the netw... ben leinfelder

08:53 AM Metacat Task #5884: Document solr-based Metacat indexing in user docs (RST format)

Added an outline in the Metacat project:
https://code.ecoinformatics.org/code/metacat/trunk/docs/user/metacat/source/... ben leinfelder

08:51 AM Metacat Task #5884 (Closed): Document solr-based Metacat indexing in user docs (RST format)

We can use this as both a design document and as an end [advanced-] user guide. ben leinfelder

08:36 AM Metacat Task #5883 (Closed): Create unit tests to exercise Metacat SOLR query/index features

It would be a good start to be able to insert a single test EML document into the index and then be able to query the... ben leinfelder

08:30 AM Metacat Bug #5875: d1_cn_index_processor package

The d1_cn_index_processor should then be considered a managed, released product and should be versioned like the d1_c... ben leinfelder

08:27 AM Metacat Task #5822: Enforce access control for SOLR-based search implementation

My gut feeling is that simply augmenting the user-provided solr query with additional AND-clauses to constrain to the... ben leinfelder

08:14 AM Metacat Task #5820: Incorporate DataONE indexing

Ideally we can compromise between reusing existing DataONE indexing configuration and making it easy for Metacat admi... ben leinfelder

08:06 AM Metacat Bug #5817: MN query for Lucene index

I believe we have decided that MNQuery will expose SOLR, not just Lucene. Marking as a duplicate. ben leinfelder

07:59 AM Metacat Bug #5815: Integrate Lucene indexing

Where "Metacat docs" include:
-Currently indexed DataONE science metadata (EML versions, FGDC versions, Dryad)
-Syste... ben leinfelder

07:47 AM Metacat Feature #5810: Implement SOLR-based search

MNQuery.listQueryEngines() will return these engines: {"pathquery", "solr"} and we'd call MNQuery.query("solr", <solr... ben leinfelder

02/24/2013

11:16 PM Metacat Bug #5814: Test CILogon-to-LDAP account mapping utility

With a client certificate for a mapped identity, I am able to see network packages that are owned by one of my equiva... ben leinfelder

02/22/2013

11:50 PM Morpho Bug #5876: Modify the Access Page for users easily inputting a DN

Looks good, Jing. I added the internationalization string for the checkbox. ben leinfelder

11:49 PM Morpho Bug #5882: Get a system metadata version number error when morpho tried to change the access policy of a network document

Until we have a better solution, I have changed the code to always look up the latest serialVersion from the CN befor... ben leinfelder

09:26 PM Morpho Bug #5882: Get a system metadata version number error when morpho tried to change the access policy of a network document

If you reopen the package, you should get the updated SystemMetadata (serial version 1) and be able to update the acc... ben leinfelder

11:46 PM Morpho Bug #5881: How can we change the access policy for the resource map document

Now setting the ORE permissions when setting EML permissions on the CN. Using the naming convention where "resourceMa... ben leinfelder

03:54 PM Morpho Bug #5878: Test morpho 2.0 on linux

Built installer on linux. Ran installer. launched Morpho using "./morpho" script. Logged in. Saved package. Updated p... ben leinfelder

07:52 AM Morpho Bug #5878 (Resolved): Test morpho 2.0 on linux

Especially the installer, the startup script and the menu rendering. ben leinfelder

03:19 PM Morpho Bug #5879: Merge ECP IdP list from CILogon with local configuration

Now merging the two lists. to actually release morpho we should comment out the test IdP entries in config.xml ben leinfelder

08:02 AM Morpho Bug #5879 (Resolved): Merge ECP IdP list from CILogon with local configuration

CILogon keeps a simple list of ECP-enabled IdPs that we can read from to get new members that support that protocol. ... ben leinfelder

11:49 AM Metacat Bug #5814: Test CILogon-to-LDAP account mapping utility

Moving to 2.0.6 release in support of Morpho 2.0 ben leinfelder

11:44 AM Metacat Bug #5865: Ensure DataONE pathquery for owner uses mapped accounts

Yes, multiple owners can be specified in the pathquery and the mapped identities are included when determining if the... ben leinfelder

07:49 AM Morpho Bug #5877: Updating the access rule cause the data package being modified

If the data package you opened had an existing <access> block, we remove it from the EML when setting the access poli... ben leinfelder

02/21/2013

11:02 PM Morpho Bug #5805: Local and Network revisions show at same time in search results

Now only filtering if there are network results to filter. This is an improvement, but still means we check if the ne... ben leinfelder

03:36 PM Morpho Bug #5805: Local and Network revisions show at same time in search results

Jing's idea is to process the network search results to see if the local hits are in the older versions of the networ... ben leinfelder

05:44 PM Morpho Bug #5873: Change [invisible] Login button to hyperlink button

Instead, we just needed to make the button non-transparent. ben leinfelder

03:38 PM Morpho Bug #5873 (Resolved): Change [invisible] Login button to hyperlink button

In Windows (7) the "Login" button only shows the text and no border or button-looking outline. Since we use a hyperli... ben leinfelder

05:12 PM Metacat Bug #5874: Lucene classpath conflict

removing the old lucene-core jar still allows us to generate ORE maps ben leinfelder

04:56 PM Metacat Bug #5874: Lucene classpath conflict

According to svn history, I added the lucene-core-2.2.0.jar when adding the foresite dependencies for libclient and O... ben leinfelder

01:28 PM Morpho Bug #5869: Test morpho 2.0 on windows

Updated d1_common_java (will be in 1.2-SNAPSHOT) to let the OS decide which temp directory to use. Let's give that a ... ben leinfelder

11:03 AM Morpho Bug #5869: Test morpho 2.0 on windows

There's no reason to specify a temp directory - we can let the OS decide where to put them. Will talk with Rob about ... ben leinfelder

07:51 AM Morpho Bug #5872: Irregularities with access control

EMG,
In Metacat 2.x, support for "denyFirst" access control rules was removed so that we more closely match the DataO... ben leinfelder

02/20/2013

11:44 PM Morpho Bug #5869: Test morpho 2.0 on windows

I converted the CSR generation in the ECP client code to use Bouncy Castle rather than the classes that were removed ... ben leinfelder

02/19/2013

05:34 PM Morpho Bug #5869: Test morpho 2.0 on windows

But then when I relaunch Morpho it fails with these messages (I see some progress bars briefly so perhaps this versio... ben leinfelder

05:25 PM Morpho Bug #5869: Test morpho 2.0 on windows

Creating a new profile using RC-1 in Win 7, I got this warning message:
"C:\Users\Visitor\.morpho\profiles\brl\data\.... ben leinfelder