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From 09/29/2005 to 10/28/2005

10/28/2005

12:20 PM Bug #2060: Documents not indexed because of error generated during indexing of documents
Increasing severity to Blocking. This is after the update on KNB. The build
index thread is failing on a more regula...
Saurabh Garg

10/27/2005

04:46 PM Revision 2698 (metacat): Removed sql syntax not acceptable by Oracle.
sgarg
04:15 PM Revision 2697 (metacat): Changed the filter and ldapbase values in getUserInfo so that it works for both NCEAS and LTER ldap
sgarg
02:46 PM Bug #2236: metacat parser allows eml with missing content

Here is the link to the document that Margaret is talking about:
http://metacat.nceas.ucsb.edu/knb/metacat?action=re...
Saurabh Garg
02:13 PM Bug #2236 (Resolved): metacat parser allows eml with missing content
Incomplete packages are allowed by the EML parser in metacat and at knb
(http://knb.ecoinformatics.org/emlparser/ind...
Margaret O'Brien
02:28 PM Bug #2237 (Resolved): web.xml, tomcat and jstl
I've been using JSP and Java Standard Tag Library functions with files in
metacat, and got tomcat5 errors because to...
Margaret O'Brien

10/26/2005

02:20 PM Revision 2695 (metacat): Bugfix in the query sent to metacat
sgarg
10:17 AM Revision 2694 (metacat): Bugfix in the metacat query generated in javascript
sgarg
09:44 AM Revision 2693 (metacat): Bug fix in the changes made in previous commit
sgarg

10/25/2005

02:54 PM Revision 2692 (metacat): changed old link for Long-Term Studies Section to current link
bowdish
02:51 PM Revision 2691 (metacat): this file is used in Fireworks to make the header and the slices
bowdish
05:11 PM Revision 2690 (metacat): Added warning to be displayed in the log when document is not inserted.
sgarg
05:09 PM Revision 2689 (metacat): 1. useSiteCoord option is made avaiable again
2. contact email address can be made required. sgarg

10/24/2005

03:06 PM Revision 2688 (metacat): Interim checkin -- getting the postgis database setup
harris

10/21/2005

01:26 PM Revision 2687 (metacat): Added lter to list of orgs.
Matt Jones
09:23 AM Bug #2207: Advanced Search integration
Advanced Search Design and Implementation Plan
The Advanced Search interface was originally designed and implemente...
Duane Costa

10/20/2005

02:01 PM Revision 2686 (metacat): New changes in the esa skin so that includes the moderator functionality and login/logout functionality
sgarg
11:59 AM Revision 2685 (metacat): These are all header updates to include the login and logout for the ESA Header links. I left the original Header and named it headerOld.html and saved the Slices
that go with it too. (the ESAHomeLogo.gif file might be overwritten) The code for
the header to work with the Logout...
bowdish
11:42 AM Revision 2684 (metacat): Modified the login method in the perl metacat client so that status of the user logging is also returned
Earlier if login info was not valid, 0 was returned. And 1 is sent back if login info was valid.
Now, if valid then ...
sgarg
11:39 AM Revision 2683 (metacat): Added support in the metacat client for the new function added to MetaCatServlet
sgarg
11:38 AM Revision 2682 (metacat): Added a new action - getloggedinuserinfo - which returns information about the user in the following format.
<user>
<username>uid=sgarg,o=NCEAS,dc=ecoinformatics,dc=org</username>
<name>Saurabh Garg</name>
<isAdministrator/>
<...
sgarg
11:34 AM Revision 2681 (metacat): Removed code entered in previous commit as it is no longer needed
sgarg
11:32 AM Revision 2680 (metacat): Also in the previous commit, the successful message changed. Now in addtion to the sessionid tag, the following tags also included: <name>[name of the user]</name>, <isModerator> (if is moderator) and <isAdministrator> (if is Administrator)
sgarg
11:26 AM Revision 2679 (metacat): Added a new function - getUserInfo to AuthInterface and AuthLdap
The function returns a string array for a given username. the array contains the name, organization name and email ad... sgarg

10/18/2005

01:48 PM Revision 2678 (metacat): Got the metacat datapackage selection (single point) working.
harris

10/17/2005

11:15 AM Revision 2677 (metacat): Fixed a bug in QueryGroup which prevented QueryGroup from appending itself to the sql query when no queryTerm is present.
sgarg

10/14/2005

07:57 AM Revision 2676 (metacat): Further work -- added additional layers, added the ability to query AOI. Almost have the js parseing the
correct metacat url, and sme style changes. harris

10/13/2005

03:44 PM Revision 2675 (metacat): Removed unused subroutines that were for testing.
Matt Jones
03:43 PM Revision 2674 (metacat): Adding the control-services.pl utility for failover montitoring. From
the README:
This program is designed to run as a script under the Hobbit system
monitoring program (http://hobbitmon...
Matt Jones
08:47 PM Revision 2673 (metacat): Remove debugging.
harris

10/12/2005

01:30 PM Revision 2672 (metacat): Added some more layers
harris
11:36 AM Revision 2671 (metacat): Fixed the mapbuilder getfeatureinfo function and modified the config. Now the metacat url addresses are available from the rendering.
harris
09:32 AM Revision 2670 (metacat): The index page for the mapbuilder rendering -- running off the geoserver
wms/wfs server. harris
09:31 AM Revision 2669 (metacat): These are the config files for the mapbuilder rendering app that connects to
geoserver to access the metacat spatial data. The display works but the ability
to get the url to the metacat docume...
harris

10/11/2005

04:17 PM Bug #2229: Allowing web registry pull-down menu for "Station Name" to select multiple stations
Data sets associated with NRS may involve for than one station. There should be
a way to select more than one statio...
Will Tyburczy
04:07 PM Bug #2229 (New): Allowing web registry pull-down menu for "Station Name" to select multiple stations
Will Tyburczy
04:05 PM Bug #2228: Use method other than metadata string filters for determining the organizations affiliationed with a data package
*** Bug 2227 has been marked as a duplicate of this bug. *** Will Tyburczy
04:04 PM Bug #2228 (New): Use method other than metadata string filters for determining the organizations affiliationed with a data package
Right now when data is registered through an organization's skin, the metadata
for the entry is made to include a sp...
Will Tyburczy
04:05 PM Bug #2227: Data associated with an organization should show up
pressed return too soon, sorry :-)
*** This bug has been marked as a duplicate of 2228 ***
Will Tyburczy
03:54 PM Bug #2227 (Resolved): Data associated with an organization should show up
"The right way to do this would be to decouple the metadata entry from
the filter that controls whether a given ent...
Will Tyburczy

10/10/2005

01:25 PM Bug #2060: Documents not indexed because of error generated during indexing of documents

Still getting the same error...
Metacat: [ERROR]: Error in DBSAXHandler.checkDocumentTable Couldn't find the
docid...
Saurabh Garg
12:27 PM Revision 2668 (metacat): Changes in log levels of some commands mentioned in the previos commit.
sgarg
11:40 AM Revision 2667 (metacat): Made logging configuration and format changes in log4j.properties
sgarg
11:25 AM Revision 2666 (metacat): Replacing MetaCatUtil.debugMessage or MetaCatUtil.logMetacat call with logMetacat (private Logger object) call
sgarg
11:22 AM Revision 2665 (metacat): Commited the wrong MetaCatUtil.java file last time. Making the changes again.
1. Replacing MetaCatUtil.debugMessage or MetaCatUtil.logMetacat call with logMetacat (private Logger object) call
2...
sgarg
11:20 AM Revision 2664 (metacat): 1. Replacing MetaCatUtil.debugMessage or MetaCatUtil.logMetacat call with logMetacat (private Logger object) call
2. Commented out debugMessage()
3. Removed getLog() and earlier old log4j code
4. Removed formattedDebugMessage
sgarg
11:06 AM Revision 2663 (metacat): Replacing MetaCatUtil.debugMessage or MetaCatUtil.logMetacat call with logMetacat (private Logger object) call
sgarg
09:53 AM Bug #2158: Metacat Performance on KNB: Bring the logging level down on ecoinfo.

Integrating log4j in Metacat. The debug levels will be as specified before:
Debug -- > 50
Info -- 25 - 50
Warn...
Saurabh Garg

10/09/2005

06:47 PM Revision 2662 (metacat): Add a new sql file to alter control file which from knb backup for new file location
Jing Tao
06:45 PM Revision 2661 (metacat): Copy the code to generate xml_path_index from xmltables.sql. xmltables.sql is working, so it may fix the bug.
Jing Tao

10/07/2005

12:26 PM Revision 2660 (metacat): Modifications to LTER skin.
Duane Costa

10/06/2005

04:49 PM Bug #468: TLS between ldap server and metacat

I was able to setup secure connection between ldap and metacat without any
changes in the code. There might be a ne...
Saurabh Garg
11:40 AM Revision 2659 (metacat): Renamed login.xsl to esa-login.xsl
sgarg
11:37 AM Revision 2658 (metacat): if moderator is logged into metacat and no option for enable-editing is specified then enable editing by default
sgarg
11:36 AM Revision 2657 (metacat): bug fix login.xsl. and modify the resultset to be called in esa.xml
sgarg
11:35 AM Revision 2656 (metacat): Copy of resultset.xsl from style/common folder which will be modified for esa skin
sgarg

10/05/2005

01:52 PM Revision 2655 (metacat): Changes in login.xsl and moderator.html so that once the moderator logs in, the resultset is displayed
sgarg
01:43 PM Revision 2654 (metacat): Fix for bug 2222. So that correct query is generated when searchmode is 'not-contains'.
sgarg
01:40 PM Bug #2222 (Resolved): Bug in squery when using not-contains
For the following squery:
<pathquery version="1.2">
<querytitle>Moderator-Search</querytitle>
<returndoctype>eml:/...
Saurabh Garg
07:20 PM Revision 2653 (metacat): Change the method to get access document docid and revision.
Jing Tao
07:19 PM Revision 2652 (metacat): Fixed bug which can cause eml beta6 couldn't run access control.
Jing Tao
06:17 PM Revision 2651 (metacat): New files and modification of esa.xml for the new moderation facility for esa skin.
sgarg
06:13 PM Revision 2650 (metacat): Add rev in get data doc info.
Jing Tao
06:12 PM Revision 2649 (metacat): Fixed a bug if one server failed in replication, it will cause another server failed.
Jing Tao
05:22 PM Revision 2648 (metacat): Add code to guess the docid's revision in read action.
Jing Tao

10/04/2005

04:17 PM Revision 2647 (metacat): Remove some debug message.
Jing Tao
04:16 PM Revision 2646 (metacat): Fixed bug couldn't delete xml_nodes when moving to xml_nodes_revision in replication.
Jing Tao
12:20 PM Revision 2645 (metacat): If skin cfg specified access rights to be included for a certain set of users and groups, then those are entered in the access permissions given.
sgarg
11:46 AM Bug #2211: automatically insert pubDate on registry submission

pubDate is included in the eml document generated. Hence closing the bug.
Saurabh Garg
11:45 AM Bug #2214: Submitting lat/long coordinates in spatial coverage section

the fix works for coordinates enterd by Dr. Hochberg too. Hence closing the
bug.
Saurabh Garg
11:44 AM Bug #2220: Temporal coverage on Data Registry form

Fixed. Now only the year is required in the form.
Saurabh Garg
10:07 AM Bug #2220 (Resolved): Temporal coverage on Data Registry form
In the Temporal Coverage of Data section of the NCEAS Data Repository form
(http://knb.ecoinformatics.org/cgi-bin/re...
Veronique Connolly
11:40 AM Revision 2644 (metacat): Fix for bug 2220. And check the cfg file if the eml documents generated should be publically readable or not.
sgarg
11:36 AM Revision 2643 (metacat): Fix for bug 2220
sgarg
11:36 AM Revision 2642 (metacat): Fix for bug# 2220
sgarg
10:58 AM Revision 2641 (metacat): Change the code to make sure DocumentImpl class's constructor should have rev attached.
Jing Tao
10:57 AM Revision 2640 (metacat): Remove this file.
Jing Tao
10:52 AM Revision 2639 (metacat): Added an attribute to the metacat shapefile called area_coef which is a function
of the areal extent of the datapackage -- so a datapackage which was related to
a global collection would have a larg...
harris
08:40 AM Revision 2638 (metacat): Added a function to strip out the whitespace that was around the bounding
coordinates retrieved from metacat, and also now writing the full set of
bounding coordiantes (east,west,south,north).
harris
08:33 AM Revision 2637 (metacat): a test dataset with coordinate harvested from metacat october 1, 2005.
harris

10/03/2005

03:15 PM Revision 2636 (metacat): bug fix so that error is displayed if station or reserve is not selected
sgarg
02:32 PM Revision 2635 (metacat): fix for the bug entered in previous fix
sgarg
02:19 PM Revision 2634 (metacat): Fix for bug in QueryGroup. Didnt check if the QueryGroup returned empty string. E.g. in case of a % search.
sgarg
01:39 PM Revision 2633 (metacat): Fixed javascript bugs
sgarg
10:12 AM Revision 2632 (metacat): fixed the qformat.
sgarg

10/02/2005

04:23 PM Revision 2631 (metacat): Move the compile.path to init so it can get some property value.
Jing Tao
04:14 PM Revision 2630 (metacat): Fixed bug in the trigger of xml_path_index table
Jing Tao
03:38 PM Revision 2629 (metacat): Fixed bug which currentDocument maybe null.
Jing Tao
03:37 PM Revision 2628 (metacat): Fixed bug which currentDocument may be null.
Jing Tao
03:37 PM Revision 2627 (metacat): fixe bug which currentDoc maybe null.
Jing Tao
03:36 PM Revision 2626 (metacat): Add code to transfer string to date type.
Jing Tao
09:57 PM Revision 2625 (metacat): Add function transfer string to date.
Jing Tao
09:21 PM Revision 2624 (metacat): Add date info.
Jing Tao
09:20 PM Revision 2623 (metacat): Add info about date.
Jing Tao
09:20 PM Revision 2622 (metacat): Changes according add data info.
Jing Tao
09:18 PM Revision 2621 (metacat): Rewrite replication for revision document.
Jing Tao
09:17 PM Revision 2620 (metacat): Add code to get date info
Jing Tao

10/01/2005

08:55 PM Revision 2619 (metacat): Fixed the bug in xml segment is not correct to express revision document list.
Jing Tao
08:27 PM Revision 2618 (metacat): Remove the print out statement.
Jing Tao
08:04 PM Revision 2617 (metacat): user jdbc-jar-name to replace the hard code zip file name
Jing Tao
05:40 PM Revision 2616 (metacat): Fixed some bug in replication.
Jing Tao
05:30 PM Bug #2211: automatically insert pubDate on registry submission

The code has been added to register-dataset.cgi.
The bug can be closed after testing.
Saurabh Garg
05:29 PM Revision 2615 (metacat): Added code to enter publication date into the dataset.
sgarg

09/30/2005

04:35 PM Revision 2614 (metacat): Add some drop command and fix the bug in creating xml_path_index table.
Jing Tao
04:05 PM Bug #2214: Submitting lat/long coordinates in spatial coverage section

Fix in the cvs now. The below given case works now. Should test with the
combination of coordinates which Dr. Hochb...
Saurabh Garg
12:40 PM Bug #2214 (Resolved): Submitting lat/long coordinates in spatial coverage section
A data package was created using the NCEAS Data Repository form. When
coordinates 53 deg, 34 min, 0 sec N, and 0 deg...
Veronique Connolly
04:03 PM Revision 2613 (metacat): Fix for 2214. Allow 0 in coordinates now.
sgarg
02:47 PM Revision 2612 (metacat): Fix for bug 2215. Error message is displayed if project name is not selected in the nceas skin.
sgarg
02:47 PM Bug #2215: NCEAS skin: NCEAS Project(s) should be a required field
Sid fixed it. Veronique Connolly
12:45 PM Bug #2215 (Resolved): NCEAS skin: NCEAS Project(s) should be a required field
On the NCEAS data repository form
(http://knb.ecoinformatics.org/cgi-bin/register-dataset.cgi?cfg=nceas), the
field...
Veronique Connolly
02:16 PM Bug #2217: Change output text for Usage rights
Sid fixed it. Veronique Connolly
01:08 PM Bug #2217 (Resolved): Change output text for Usage rights
Under the "Usage Rights" field, when you select "Obtain permission from data set
owner(s)" the output (what appears ...
Veronique Connolly
02:07 PM Revision 2611 (metacat): Fix for bug 2217
sgarg
02:07 PM Revision 2610 (metacat): Add the copy command for jdbc to war file. Otherwise in oracle, the servlet couldn't find jdbc driver.
Jing Tao
01:56 PM Bug #2218: Data medium info not saved in editing mode
Sid fixed it. Veronique Connolly
01:26 PM Bug #2218 (Resolved): Data medium info not saved in editing mode
When you go back to the data registry form (this was for the NCEAS skin) after
getting a failure message (by using t...
Veronique Connolly
01:43 PM Revision 2609 (metacat): Fix for bug 2218
sgarg
01:29 PM Bug #2219 (Resolved): EML document from Andrews LTER are modified by Metacat during insertion and converted into invalid EML
Below are the emails exchanged on metacat-dev describing this bug.
The bug is most probably in the SAX parser libr...
Saurabh Garg
12:48 PM Revision 2608 (metacat): Add code to handle deleted document replication.
Jing Tao
12:47 PM Revision 2607 (metacat): Add code to handle replicate the deleted document.
Jing Tao
12:47 PM Revision 2606 (metacat): Add method to get revision list in xml_revisions table for a given docid.
Jing Tao
12:46 PM Revision 2605 (metacat): Add code to handle replication deleted docs.
Jing Tao
12:44 PM Revision 2604 (metacat): Change setString to setInt for ticket account because driver changes.
Jing Tao
 

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