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From 11/17/2011 to 12/16/2011

12/16/2011

02:48 PM Bug #5560: Upgrade access control rules in Metacat DB
I'm now also forcing the shared System Metadata map to reload into memory all the system metadata for data objects th... ben leinfelder
10:03 AM Bug #5522: download linked KNB data and convert links in EML to ORE packages
From discussion yesterday:
Converting a node from KNB to D1
--------------------------------------------------
0. Ge...
ben leinfelder

12/15/2011

12:22 PM Bug #5536: Restore replicated data files that are 0 bytes
Current proposal for upgrade script solution:
-find all data files in the configured data directory for Metacat
-dele...
ben leinfelder
10:40 AM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
Jing says it's fixed! ben leinfelder
10:31 AM Bug #5567 (Resolved): Click the schedule button on sankparks skin got an blank page
Click TPC worklfow link on the sanparks skin, user will get a list of workflows. Every workflow has three associated ... Jing Tao

12/13/2011

04:43 PM Bug #5563: Kepler can't get search result from metacat 2.0.0
It turned out that the ecogrid tag (1.2.2.rc4) which the trunk used has wrong version of ecogridToPathquery.xsl. The ... Jing Tao
03:49 PM Bug #5534: Replication log somehow doesn't work.
As configured, all INFO level (and above) messages for ReplicationLogging will go to the replication log file and not... ben leinfelder
03:09 PM Bug #5532: Use strict build tag strategy for 2.0.0 release
there is an Ecogrid change needed ben leinfelder
02:58 PM Bug #5516: continue updating user documentation
Also add in the OAI-PMH documentation contributed by Duane Costa. Matt Jones
11:07 AM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
Now the cache key is using populated string with parameter values rather than just "?". It is working. Jing Tao
10:19 AM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
Yeah.
this is the way i am doing :)
Jing Tao
10:18 AM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
Good catch!
We can use the query string _after_ the parameter values are bound to the prepared statement.
Would look...
ben leinfelder
10:21 AM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
I played around with that, but it basically means the Perl code would have to act as a proxy for the browser session ... ben leinfelder

12/12/2011

04:48 PM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
I like main page still keeping to use Java login. So user can do uploading data, schedule workflow et al without inst... Jing Tao
12:22 PM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
I've fixed the first issue where after logging in from the "Register Data" you are now redirected to the registry for... ben leinfelder
11:00 AM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
And the login/logout action on the home page seems not affect the login status on the "Register Data" at all. Jing Tao
01:51 PM Bug #5560: Upgrade access control rules in Metacat DB
Access control JUnit tests are all passing. I would like to test this from a 1.9.5 Metacat installation being upgrade... ben leinfelder
01:49 PM Bug #5532: Use strict build tag strategy for 2.0.0 release
okay, that's simple enough to have agreed on! ben leinfelder
01:49 PM Bug #5523: setting authoritative MN and rightsHolder for KNB data on conversion
More musing on the authoritative MN/replica policy for upgrading Metacat deployments:
-If we only generate SystemMeta...
ben leinfelder

12/09/2011

04:40 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
in the cache system, we use the combination of the selection and extended query as the key to store the cache result.... Jing Tao
04:05 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
After restarting tomcat, i ran the two queries on the dev skin. The second one is from cache. This is wrong since the... Jing Tao
04:29 PM Bug #5534: Replication log somehow doesn't work.
Ben: after you change the debug level, the replication log will go to catalina.out or the metacatreplication.log file... Jing Tao
04:25 PM Bug #5534: Replication log somehow doesn't work.
had to add the log level when defining the replication logger:
log4j.logger.ReplicationLogging=INFO, replication
ben leinfelder
02:56 PM Bug #5560: Upgrade access control rules in Metacat DB
Metacat now tracks permissions for each revision of a document/data object.
The upgrade goes like this:
1. Generate ...
ben leinfelder
10:21 AM Bug #5114: ESA registry: Bad link in 'register dataset' instructions
Added "esa" context to the URL so now it points to the correct page.
http://data.esa.org/esa/cgi-bin/register-dataset...
ben leinfelder

12/08/2011

04:15 PM Bug #5523: setting authoritative MN and rightsHolder for KNB data on conversion
On further reflection, I think we might only want to be generating SystemMetadata for objects that were added directl... ben leinfelder
03:13 PM Bug #5523: setting authoritative MN and rightsHolder for KNB data on conversion
We can certainly find out our local KNB MN Id since it will be configured, but I'm not sure how we would go about def... ben leinfelder
04:10 PM Bug #5244: ldapweb.cgi shouldn't report ou=Account accounts since they're unusable
Used Jing's test server to verify that ou=Account entries were not shown.
http://chico1.dyndns.org/knb/cgi-bin/ldapwe...
ben leinfelder
03:52 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
Items I am suspicious about:
2(c)(i) -- Generating new objects from external data (URLs) that metadata points to. The...
ben leinfelder
02:44 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
No, it is not. I haven't update your code yet.
I figured it out somehow the search result was cached even the querie...
Jing Tao
02:17 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
Do you think this is because of the new permission handling in Metacat?
The change I just made to trunk means that e...
ben leinfelder

12/07/2011

02:42 PM Bug #5566 (Resolved): Click View Run link get 0 result if user doesn't login on the sanparks skin
On the sanparks skin, if you click the TPC workflows link, you will get a list of workflows. There are three actions ... Jing Tao
01:12 PM Bug #5544: the footer of the output page after clicking TPC status/workflow can't be read on Sanparks skin
It turns out that the TPC workflow/status use another set of css and jsp files. I use the the way of home page to rep... Jing Tao

12/06/2011

03:48 PM Bug #5563 (Resolved): Kepler can't get search result from metacat 2.0.0
I used kepler 2.3 to do a % query against a metacat which was built from the trunk. It didn't show any result. Actual... Jing Tao

12/05/2011

09:02 AM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
Hi, Ben:
I just tried and the sql error has gone. Thanks!
However, it seems that all worklfow and run kar files are...
Jing Tao

12/02/2011

05:36 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
One problem was that the predicate expression was incorrectly escaping the predicate quotes -- now that they are prep... ben leinfelder
04:23 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
The parameterValues is:
[karEntry/karEntryAttributes/tpcStatus, mainAttributes/lsid, karEntry/karEntryAttributes/Name...
Jing Tao
04:22 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
The sql statement is:
select xml_nodes.docid, xml_index.path, xml_nodes.nodedata, xml_nodes.parentnodeid, xml_nodes....
Jing Tao
04:21 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
The pathquery doesn't work:
<pathquery version='1.2'><returndoctype>http://www.kepler-project.org/kar-2.0.0</returndo...
Jing Tao
04:19 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
Okay. It turned out the query on comment 2 does work. Jing Tao
03:39 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
i added a printStatckTrace statement and it gave me this:
at org.postgresql.core.v3.SimpleParameterList.bind(SimplePa...
Jing Tao
03:36 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
actually, it is not only for the sanpark skin. This query will cause same issue:
<?xml version="1.0"?>
<pathquery ver...
Jing Tao
10:31 AM Bug #5561 (Resolved): Got a SQL error when click TPC workflows or TPC link on sanparks skin
Clicked TPC status, I saw:
knb 20111202-10:30:51: [ERROR]: DBQuery.createResultDocument - SQL Error: The column in...
Jing Tao
11:28 AM Bug #5562: Got an NPE when upgrade db from 1.9.5 to 2.0.0
it was possible to have a null prepared statement if there were no data values to convert to dates -- now checking fo... ben leinfelder
11:23 AM Bug #5562 (Resolved): Got an NPE when upgrade db from 1.9.5 to 2.0.0
knb 20111202-11:20:14: [ERROR]: SkinsAdmin.configureSkins - Could not find properties for skin: semtools [edu.ucsb.nc... Jing Tao
11:25 AM Bug #5560: Upgrade access control rules in Metacat DB
By removing the 'docid' column from the 'xml_access' table, we introduce a huge amount of refactoring -- the custom E... ben leinfelder
09:02 AM Bug #5560 (Resolved): Upgrade access control rules in Metacat DB
Metacat handles a single access control policy for ALL revisions of an object whereas DataONE allows different access... ben leinfelder

12/01/2011

04:34 PM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
If you login on the sanparks home page, you will get the login form when you click Register Data link. It seems that ... Jing Tao
03:43 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
Use accessBlock parameter on setaccess action to replace the original access rules by the new access rules. The new a... Jing Tao
12:29 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
Disregard the Xerces panic -- I had an old XercesImpl.jar hanging out in my classpath. ben leinfelder

11/30/2011

01:06 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
Using the Foresite library in Metacat to build the ORE maps fails because of jar dependencies. The dependencies are a... ben leinfelder

11/29/2011

09:46 AM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
reopen this bug since ben added a comment on bug 5553:
There is currently a method in Metacat's access API that allo...
Jing Tao
09:38 AM Bug #5553: setaccess action may have deleting access rule functionality
Sounds like we can use it. However, we have to parse the returned result of action=getaccesscontrol in order to prese... Jing Tao
09:16 AM Bug #5553: setaccess action may have deleting access rule functionality
There is currently a method in Metacat's access API that allows you to set the entire access block for a given docume... ben leinfelder

11/28/2011

04:53 PM Bug #5553: setaccess action may have deleting access rule functionality
When this bug is fixed, we should reopen the bug 5551:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5551
Jing Tao
04:53 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
Now we had temporary solution for set/revoke public readable access:
user can grant public access to a document, then...
Jing Tao
02:36 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
For the issue on comment 4, I found the clientViewBean object wasn't set sesssion id in ClientViewHelper.java. After ... Jing Tao

11/23/2011

02:55 PM Bug #5553 (New): setaccess action may have deleting access rule functionality
Currently, setaccess action can only add access rules to the metacat. There is a limitation.
Sometimes, we want to...
Jing Tao
02:48 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
Also i noticed after set the access, the delete, update and set access button disappeared. Only download button can b... Jing Tao
02:36 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
Since "setaccess" action can add access rules, this will cause problem.
Since the documents' allow rules for public r...
Jing Tao
02:23 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
To a none-public readable document, if we click the set access button with the checked public read check box, the doc... Jing Tao
01:59 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
The kepler_kepler_21 is a FGDC document with the public readable access rule. Here is the record on xml_access:
keple...
Jing Tao
11:09 AM Bug #5551 (Resolved): Set public access button on the FGDC document display page doesn't work (on sanparks skin).
When I tried to grant a public readable access to a nonpublic readable document, i got an error:
User public does n...
Jing Tao
01:07 PM Bug #5537: Move replication control panel to /admin servlet
There is now a separate /admin screen for replication configuration. Now /replication can require SSL client certific... ben leinfelder
11:00 AM Bug #5530: Sanparks skin shows update and delete action when user public reads a FGDC package
Ben:
Okay. This is the current behavior. I am going to close the bug.
Jing Tao
10:44 AM Bug #5530: Sanparks skin shows update and delete action when user public reads a FGDC package
I think the checkbox should reflect the current state of the document. If it is unchecked, that indicates that it is ... ben leinfelder

11/22/2011

05:10 PM Bug #5530: Sanparks skin shows update and delete action when user public reads a FGDC package
If fgdc-root.xsl, it has the control to display the buttons or not. The control is the parameter "enableFGDCediting".... Jing Tao

11/21/2011

02:22 PM Bug #5548 (New): Replace COS Mime multipart library
Here is a comment from Matt in bug 5543:
The COS Mime multipart library is incredibly old, and we should
seriousl...
Jing Tao
02:20 PM Bug #5543: Can't upload a FGDC metadata file with a data file in SANParks skin
Ben committed a new version of cos.jar file and modified the MetacatClient.java to handle the file size being -1. In ... Jing Tao
11:33 AM Bug #5543: Can't upload a FGDC metadata file with a data file in SANParks skin
We may not even have to require a known size -- Metacat isn't storing that information. Sure, the new DataONE apis us... ben leinfelder
10:17 AM Bug #5547 (New): Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
When you click "Register Data" tab on Sanparks skin, it will show a login form if you haven't login. However, it will... Jing Tao

11/18/2011

07:51 PM Bug #5543: Can't upload a FGDC metadata file with a data file in SANParks skin
Jing --
I'm not sure what the right solution is here, but here are some thoughts. First, trying to get the length o...
Matt Jones
05:58 PM Bug #5543: Can't upload a FGDC metadata file with a data file in SANParks skin
After dug around the code, i figured out the problem is at the CoientViewHelper.java.
In handlePackageUpload method,...
Jing Tao

11/17/2011

04:04 PM Bug #4728: grant document management privileges to admin user
Admin user[s] now have complete control of the Metacata data and metadata. The list of items here (1-6) are covered n... ben leinfelder
02:40 PM Bug #5544 (Resolved): the footer of the output page after clicking TPC status/workflow can't be read on Sanparks skin
The text of the footer of the output page is black and can be read when a user click TPC workflow/status menu. Jing Tao
02:31 PM Bug #5542: Data Package Upload form in SANParks skin missing the description text
In footer, set some text to be regwhitetext. So everything looks fine. Jing Tao
02:30 PM Bug #5542: Data Package Upload form in SANParks skin missing the description text
The text was not missing, but its color was white and couldn't be read.
The regtext class in sanparks.css was set:
....
Jing Tao
12:03 PM Bug #5533: Sanpark skin main page has login issue
For the first issue that a user could not log in on IE, the reason is IE invalid the login form after a div, which co... Jing Tao
 

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