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From 05/16/2013 to 06/14/2013

06/14/2013

05:39 PM Bug #6003 (Closed): The "war" target in the metacat will build the metacat-index.war
We added the target which build metacat-index.war as the dependency of the "war" target. Jing Tao
05:37 PM Bug #6003 (Closed): The "war" target in the metacat will build the metacat-index.war
The "war" target in the metacat doesn't build the metacat-index.war in the dist directory. It only builds knb.war and... Jing Tao
05:35 PM Task #5930: Add a configuration property to turn on/off the indexing processes (SOLR indexing)
If we removed the "solr" from the engine list, metacat-index will not build index anymore. And the solr query will be... Jing Tao
05:20 PM Revision 7804 (metacat): Add the dataone repository.
Jing Tao

06/13/2013

04:41 PM Revision 7803 (metacat): The "war" target will build the metacat-index.war as well.
Jing Tao

06/12/2013

02:36 PM Revision 7802 (metacat): Log the timed index jobs.
Jing Tao
02:08 PM Revision 7801 (metacat): Add the code to log the failed events.
Jing Tao
06:24 PM Revision 7800 (metacat): Add a temporary file log for debugging.
Jing Tao
06:23 PM Revision 7799 (metacat): Use commons-io 2.4
Jing Tao

06/11/2013

03:47 PM Revision 7798 (metacat): Add a new property for the index event log class name.
Jing Tao

06/07/2013

04:38 PM Revision 7797 (metacat): Add a serial number for the event.
Add method to set events to be archived. Jing Tao
11:56 AM Feature #5936: Include certificate delegation inside Metacat
There's now the package "edu.ucsb.nceas.metacat.portal" that does the authentication delegation. You start a request ... ben leinfelder
11:22 AM Revision 7796 (metacat): Add a new class variable - isArchived for class IndexEvent.
Jing Tao

06/06/2013

04:13 PM Revision 7795 (metacat): Update the documentation about those classes.
Jing Tao
03:48 PM Bug #5997 (Closed): Restrict KNB trusted CAs
Commented out the line that includes all CAs in /etc/ssl/certs and reloaded Apache. Now we are down to the short list... ben leinfelder
03:17 PM Revision 7794 (metacat): Add a event and eventlog for the index.
Jing Tao

06/05/2013

03:03 PM Revision 7793 (metacat): Use the identifier set to get the list of ids in the member node.
Jing Tao
02:20 PM Revision 7792 (metacat): The returned ISet should be Identifier.
Jing Tao
01:50 PM Revision 7791 (metacat): Add code to test getIdentifierSet method.
Jing Tao
01:50 PM Revision 7790 (metacat): Add method to get identifier set.
Jing Tao
11:02 AM Bug #5997: Restrict KNB trusted CAs
We should be able to simply use the DataONE chain file that we have installed already:... ben leinfelder
11:00 AM Bug #5997 (Closed): Restrict KNB trusted CAs
Instead of trusting all commercial CAs, the KNB Member Node should only trust the DataONE and CILogon certificate aut... ben leinfelder

06/04/2013

02:49 PM Revision 7789 (metacat): Add a new property to specify the interval of a Timer to run the thread generating solr index.
Jing Tao
02:47 PM Revision 7788 (metacat): Set up a Timer to run the regenerating solr index task periodically.
Jing Tao
05:36 PM Task #5922 (Closed): Modify the solr index configuration for the resource map
We rewrote the ResourceMapSubprocessor class which now uses the SolrServer. Jing Tao
05:22 PM Task #5937 (Closed): The solr indexes of the data file contains obsoleted ids for the resourcemap and documentBy element after updating a data package
Add code to modify the "documents", "resourceMap" and "documentedBy" element in the solr doc when archive happens. Jing Tao

06/03/2013

04:35 PM Revision 7787 (metacat): Use the ";" as the seperator to replace "," in the resource name spaces.
Jing Tao

05/31/2013

03:29 PM Revision 7786 (metacat): Add code to handle delete data package information when delete a pid in the solr index.
Jing Tao
02:05 PM Revision 7785 (metacat): Add two static methods to get the SystemMetadata and data object InputStream for the specified id.
Jing Tao

05/29/2013

05:19 PM Revision 7784 (metacat): Change the code since the ApplicationController's constructor was changed.
Jing Tao
05:18 PM Revision 7783 (metacat): Add code to check if the metacat.properties is available.
Jing Tao

05/28/2013

01:21 PM Revision 7782 (metacat): If solr is not enabled, it would not be running.
Jing Tao
01:20 PM Revision 7781 (metacat): Solr will be enabled if it is in the db.enabledEngines.
Jing Tao
01:18 PM Revision 7780 (metacat): Use ";" to separate db.enabledEngines.
Jing Tao

05/25/2013

06:16 PM Task #5994 (New): Create REST API for accessing statistics
For objects, users, packages, nodes, etc. Matt Jones
06:15 PM Task #5993 (New): Summarize and index statistics for fast access
Matt Jones
06:15 PM Task #5992 (New): Track citations
Or interface with Impact Story Matt Jones
06:14 PM Task #5991 (New): Track views
Matt Jones
06:14 PM Task #5990 (New): Track downloads
Matt Jones
06:14 PM Feature #5989 (In Progress): Track data download, view and citation statistics
Currently the only usage stats we have in Metacat are the raw logs. This new service would provide several statistic... Matt Jones

05/24/2013

04:47 PM Revision 7779 (metacat): Use the ";" as the seperator for properties.
Jing Tao
04:38 PM Task #5945 (Closed): Implement reindex action for individual PID
We may need issue a command to metacat-index to regenerate index for all missed ids or just regenerate one for a spec... Jing Tao
04:31 PM Task #5944 (Closed): Metacat-index need an IndexEvent and IndexEventLog mechanism
We need the IndexEvent and IndexEventLog to handle the events in building the solr index. For example, a failure even... Jing Tao
04:24 PM Task #5943 (Resolved): Eliminate the unnecessary Systemmetadata event between the Metacat and Metacat-index modules.
Currently we split metacat and metacat-index web apps. The communication between them is the Systemmetadata entry eve... Jing Tao
04:12 PM Task #5926 (Resolved): Metacat-index doesn't build solr index during a Metadata inserting document
It turned out that the solr doc was generated. However, the building index and querying index use different EmbeddedS... Jing Tao
04:05 PM Task #5927 (Resolved): Implements listing the query engines and fields for the solr query engine
We add a new class - MetacatSolrEngineDescriptionHandler to handle the request. It works on both http solr server and... Jing Tao
04:03 PM Task #5822 (Resolved): Enforce access control for SOLR-based search implementation
Jing Tao
04:02 PM Task #5904 (Resolved): Design mechanism to enforce access policy
We append a filter query to enforce the access rules. Jing Tao
04:01 PM Task #5905 (Resolved): Implement access control filter
Add junit test to test the public, specified user and group users readable documents. Also it tests a use with untru... Jing Tao
03:58 PM Task #5820 (Resolved): Incorporate DataONE indexing
Create metacat-index web apps to avoid the spring in the metacat. We also create the metacat-common to share code bet... Jing Tao
03:57 PM Task #5819 (Resolved): MN query for SOLR
The query and query description is done. Jing Tao
03:56 PM Task #5906 (Resolved): Implement MetacatSolrIndex class
We added two classes MetacatSolrIndex and MetacatSolrEngineDescriptionHandler. This two classes handle the query and ... Jing Tao
03:07 PM Task #5942 (Closed): Handle sessionid (cookie from login method) in D1 REST service
This is now in D1ResourceHandler in Metacat trunk ben leinfelder
05:22 PM Task #5942 (Closed): Handle sessionid (cookie from login method) in D1 REST service
If there is no client certificate on the request or in the portal delegation store, then we should look for a valid s... ben leinfelder
10:20 AM Revision 7778 (metacat): do not require PortalCertificateManager be configured. Fix NPE because session was not created when using old sessionid-based authentication. https://projects.ecoinformatics.org/ecoinfo/issues/5942
ben leinfelder
12:09 AM Revision 7777 (metacat): change the waiting time to 10 seconds and attempts to 600 for the hazelcast.
Jing Tao
11:57 PM Revision 7776 (metacat): Use another thread in the Servlet init method to wait hazelcast.
Jing Tao
10:42 PM Revision 7775 (metacat): Make the target init depend on build-metacat-common.
Jing Tao
09:59 PM Revision 7774 (metacat): Put the waiting mechanism for the hazelcast at the first place.
Jing Tao
09:45 PM Revision 7773 (metacat): handle client certificates, portal certificates and jsessionid as three ways to prove you are an uthenticated user. https://projects.ecoinformatics.org/ecoinfo/issues/5942
ben leinfelder
06:39 PM Revision 7772 (metacat): Use some contants from the EnabledQueryEngines.
Jing Tao
06:28 PM Revision 7771 (metacat): Temporarily remove the code to disable solr engine if it isn't listed in the property file.
Jing Tao
05:19 PM Task #5941 (Rejected): Add login/logout methods to DataONE MN service
These will use the existing functionality of Metacat servlet's action=login/logout. ben leinfelder
05:17 PM Story #5940 (Closed): Support session-based Metacat authentication (for D1 services)
We want to be able to deploy Metacat without relying on DataONE, CILogon, ECP, or even client certificates.
Idea i...
ben leinfelder

05/23/2013

04:44 PM Feature #5939 (Closed): Create view service that can render metadata documents at REST URL
We need a 'landing page' for metadata views that can be referenced as REST URLs and that show an HTML'ised version of... Matt Jones
04:41 PM Feature #5936: Include certificate delegation inside Metacat
Here's the documentation for MyProxy that I was using to set this all up: http://grid.ncsa.illinois.edu/myproxy/oauth... ben leinfelder
04:29 PM Revision 7770 (metacat): exlude /lib/maven from the war file
ben leinfelder
04:27 PM Revision 7769 (metacat): If the solr engine is disabled, the metacat index will do nothing.
Jing Tao
01:43 PM Revision 7768 (metacat): Use the new name of a method.
Jing Tao
01:42 PM Revision 7767 (metacat): Rename a method to isEnabled.
Jing Tao
01:26 PM Revision 7766 (metacat): Updated documentation, and added modification date to the sitemap index file entries.
Matt Jones
12:55 PM Revision 7765 (metacat): Remove unused import.
Matt Jones
12:52 PM Revision 7764 (metacat): Mofdified Sitemap class to also generate the sitemap index file that is needed when more than one sitemap file is provided.
Matt Jones
12:42 PM Revision 7763 (metacat): Remove the junit test for an obsoleted class.
Jing Tao
12:41 PM Revision 7762 (metacat): Remove the obsoleted class.
Jing Tao
12:40 PM Revision 7761 (metacat): Add a junit test class for EnabledQueryEngines.
Jing Tao
12:40 PM Revision 7760 (metacat): Add a test base class.
Jing Tao
12:39 PM Revision 7759 (metacat): Add a class to repsent the enabled engine list.
Jing Tao
11:55 AM Revision 7758 (metacat): Change the junit version to 4.8
Jing Tao
10:20 AM Revision 7757 (metacat): use ContentTypeInputStream interface (and ByteArray implementation) to specify the desired content-type of the InputStream returned by MN.query().
ben leinfelder
09:15 AM Revision 7756 (metacat): Add the new property dbquery.enabledEngines=pathquery,solr.
Jing Tao

05/22/2013

04:44 PM Revision 7755 (metacat): load the evicted SM back into the map on a "Refresh" so that listeners hear the update. (metacat-index, for example)
ben leinfelder
04:18 PM Revision 7754 (metacat): set the dataone.hazelcast.location.clientconfig property to be the local config file. It will be used in the d1_cn_index_processor
Jing Tao
03:50 PM Revision 7753 (metacat): use DataONE cilogon skin so that we are not prompted for certificate duration (and to make it more cohesive as a prototype using the Metacat DataONE skin
ben leinfelder
03:49 PM Revision 7752 (metacat): switch back to log4j statements now that I am sure certificate delegation is working.
ben leinfelder
03:35 PM Revision 7751 (metacat): add link to login or switch user
ben leinfelder
03:29 PM Revision 7750 (metacat): add simple page to show logged-in user subject DN
ben leinfelder
03:02 PM Revision 7749 (metacat): use System.out.println until the oa4mp logging issue is resolved.
ben leinfelder
11:23 AM Task #5928 (Closed): Make sure to start metacat-index web apps when the metacat web apps is start-up during the tomcat startup
Added the mechanism to wait some time if the MNode or the Hazelcast is not ready. We also add a maximum attempt contr... Jing Tao
11:19 AM Revision 7748 (metacat): Read the waiting time and maximum attempts from the metacat.properties file.
Jing Tao
10:56 AM Revision 7747 (metacat): Add the waiting time and max attempts for regenerating the index.
Jing Tao
10:36 AM Revision 7746 (metacat): use filesystem store. in-memory store seems to get into deadlock with multiple environments accessing it.
ben leinfelder
10:34 AM Revision 7745 (metacat): add logging for portal certificate look up process.
ben leinfelder
10:29 AM Revision 7744 (metacat): Add some new properties for the test.
Jing Tao
09:34 AM Revision 7743 (metacat): use relative path for oa4mp_client.xml (within servlet context). https://projects.ecoinformatics.org/ecoinfo/issues/5936
ben leinfelder
08:05 AM Revision 7742 (metacat): use in-memory storage for myproxy. at least for now.
ben leinfelder
11:35 PM Revision 7741 (metacat): Add a property containing the list of the resource map namespaces.
Jing Tao
11:33 PM Revision 7740 (metacat): Index the none-resourcemap data objects first, then the resourcemap objects.
Jing Tao
11:32 PM Revision 7739 (metacat): used pk8 format private key file name
ben leinfelder
11:12 PM Revision 7738 (metacat): use java 1.6 compliance for compilation
ben leinfelder
11:05 PM Revision 7737 (metacat): first pass at integrating CILogon/MyProxy certificates in Metacat. Configuration is specific to mn-demo-4.test.dataone.org for the time being (this will cause localhost deployments to fail webapp deployment). https://projects.ecoinformatics.org/ecoinfo/issues/5936
ben leinfelder
11:05 PM Revision 7736 (metacat): first pass at integrating CILogon/MyProxy certificates in Metacat. Configuration is specific to mn-demo-4.test.dataone.org for the time being (this will cause localhost deployments to fail webapp deployment). https://projects.ecoinformatics.org/ecoinfo/issues/5936
ben leinfelder
07:35 PM Bug #5938 (Closed): sitemap format is deprecated
Updated the namespace to use the 0.9 format. No other changes needed for validity. Committed in r7735. Matt Jones
07:34 PM Bug #5938 (Closed): sitemap format is deprecated
The sitemap format used by Metacat has been deprecated, and should be updated to the current release (0.9) as publish... Matt Jones
07:32 PM Revision 7735 (metacat): Updated Sitemap generation to use latest version of the sitemap protocol schemas.
Matt Jones

05/21/2013

02:23 PM Revision 7734 (metacat): Try to get the metacat ids first.
Jing Tao
11:29 AM Task #5937 (Closed): The solr indexes of the data file contains obsoleted ids for the resourcemap and documentBy element after updating a data package
I used a morpho to insert a data package which includes the data file, eml file and resource map file to the metacat.... Jing Tao
11:11 AM Revision 7733 (metacat): Use SolrQueryServiceController to get the ValidFieldList.
Jing Tao
11:39 PM Revision 7732 (metacat): Remove the code to throw an exception if the subjects is null in the query method.
Jing Tao
10:42 PM Revision 7731 (metacat): changed the xpath to get solr_spec_version.
Jing Tao
10:20 PM Revision 7730 (metacat): Use the SolrQueryServiceController to get the spec version and index schema information.
Jing Tao
10:18 PM Revision 7729 (metacat): Add some new properties for the http solr server.
Jing Tao
09:33 PM Revision 7728 (metacat): Add the getIndexFields and getValidIndexFields methods.
Jing Tao

05/20/2013

04:27 PM Revision 7727 (metacat): Add getSolrSpecVersion method for the HttpServer and the controller.
Jing Tao
02:12 PM Revision 7726 (metacat): Imeplement the getSolrVersion, getSchemaField and getValidSchemaFields for the EmbeddedSolrServer.
Jing Tao

05/19/2013

11:46 PM Revision 7725 (metacat): Change the package of SolrQueryReponseWriterFactory and SolrQueryResponseTransformer.
Jing Tao
11:32 PM Revision 7724 (metacat): Change the package name of SolrQueryResponseTransformer and SolrQueryWriterFactory.
Jing Tao
11:29 PM Revision 7723 (metacat): move SolrQueryResponseTransformer and SolrQueryReponseWriterFactory to the query package.
Jing Tao
11:28 PM Revision 7722 (metacat): Move it to the query package.
Jing Tao
11:28 PM Revision 7721 (metacat): move it to the query package.
Jing Tao
11:24 PM Revision 7720 (metacat): Use the new query(SolrParams param) method of the SolrQueryServiceController.
Jing Tao
11:22 PM Revision 7719 (metacat): Remove the query(String query) methods from SolrQueryService.java.
Jing Tao
05:19 PM Revision 7718 (metacat): Use the SolrQueryServiceController class to handle the query.
Jing Tao

05/18/2013

04:49 PM Revision 7717 (metacat): Add the depency of d1_cn_index_processor here.
Jing Tao
04:48 PM Revision 7716 (metacat): Remove the depency on the d1_cn_index_processor.
Jing Tao
03:57 PM Revision 7715 (metacat): move the depency of d1_cn_index_processor to the metacat-common module.
Jing Tao
03:56 PM Revision 7714 (metacat): Use one query method in the SolrQueryServiceController.
Jing Tao
03:38 PM Revision 7713 (metacat): Move the solr query part here since metacat-index needs to query the solr server too.
Jing Tao
03:37 PM Revision 7712 (metacat): Use the sepcified exceptions to replace the Exception.
Jing Tao
05:01 PM Revision 7711 (metacat): Add the code to add a resource map information.
Jing Tao

05/17/2013

04:07 PM Revision 7710 (metacat): Add code the transform query response to SolrDoc.
Jing Tao
02:22 PM Revision 7709 (metacat): Move the cod which transformed the query response to the inputstream to the metacat-common module.
Remove some obsoleted imports. Jing Tao
02:05 PM Revision 7708 (metacat): Add a transformer to process the query response object.
Jing Tao
12:57 PM Revision 7707 (metacat): Move the code to generate the QueryResponseWriter to the metacat-common module. So it can be shared with the metacat-index module.
Jing Tao
12:40 PM Revision 7706 (metacat): Add a new class to create the solr QueryResponseWriter.
Jing Tao
10:58 AM Feature #5936 (Closed): Include certificate delegation inside Metacat
Like the d1_portal, we want to be able to have users authenticate with their preferred Identity Provider via the brow... ben leinfelder
10:52 AM Task #5928: Make sure to start metacat-index web apps when the metacat web apps is start-up during the tomcat startup
Is there a way to tell Tomcat which order to load the webapps? I have seen some errors on mn-demo-4 when metacat-inde... ben leinfelder
10:44 AM Task #5935 (Rejected): Display the PID not the docid in the rendered metadata
I think we decided that rendering the PID on the EML view page is not a requirement at this time, though I still thin... ben leinfelder
10:41 AM Revision 7705 (metacat): use pid, not docid as the parameter to the registry when editing/deleting objects since the vlaue is really the pid. https://projects.ecoinformatics.org/ecoinfo/issues/5932
ben leinfelder
10:29 AM Revision 7704 (metacat): exclude jibx-tools, maven cruft and org.eclipse "dependencies" to cut down on the number of jar files in the lib folder.
ben leinfelder
10:27 AM Revision 7703 (metacat): organize imports
ben leinfelder
09:57 AM Revision 7702 (metacat): format before editing
ben leinfelder

05/16/2013

04:02 PM Revision 7701 (metacat): use java 1.6 for maven compiler
ben leinfelder
03:42 PM Task #5932 (Closed): Allow use of PID (or docid) using cgi-registry modification form
The registry now calls a new Metacat servlet method: getDocid(pid). Then it continues on as though the docid was prov... ben leinfelder
03:22 PM Revision 7700 (metacat): use correct test for PID param.
ben leinfelder
03:21 PM Revision 7699 (metacat): remove extra lines from returned <docid/> block. https://projects.ecoinformatics.org/ecoinfo/issues/5932
ben leinfelder
01:53 PM Revision 7698 (metacat): move to libclient/common snapshot to match metacat-common project.
ben leinfelder
12:04 PM Revision 7697 (metacat): Use the new class to handle the resource map.
Jing Tao
 

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