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From 04/07/2014 to 05/06/2014

05/06/2014

04:22 PM Story #6548 (Closed): Expand ORE model to allow relationships for derived datasets
Design a new model for Metacat's OREs where relationships:
- wasGeneratedBy
- derivedFrom
- used
- etc.
are ...
Lauren Walker
02:10 PM Bug #6546 (Closed): old metacat URIs should redirect to #view service
Metacat trunk now has the short form Metatcat read URIs redirecting to the Metacat UI #view using the looked-up pid/i... ben leinfelder
05:17 PM Revision 8764 (metacat): redirect "short form" metacat read URIs to the the new Metacat UI using the configured UI context. This translates the docid -> pid to use the correct identifier for the correct service. https://projects.ecoinformatics.org/ecoinfo/issues/6546
ben leinfelder

05/05/2014

01:39 PM Bug #6546: old metacat URIs should redirect to #view service
It looks like we have decided that we will redirect users to the new KNB /#view service from the /metacat/{docid} KNB... Lauren Walker
11:37 AM Bug #6546: old metacat URIs should redirect to #view service
For the perl registry, I ended up needing another Metacat servlet method to get the docid when given a pid:
https://...
ben leinfelder
11:21 AM Bug #6546: old metacat URIs should redirect to #view service
We could update the Metacat KNB skin with a informational message about the new KNB redesign with a link to the new K... Lauren Walker
10:52 AM Bug #6546: old metacat URIs should redirect to #view service
You are proposing a redirect from a Metacat docid to a DataONE Identifier -- these are not always the same value and ... ben leinfelder
02:25 AM Bug #6546 (Resolved): old metacat URIs should redirect to #view service
Researchers have complained that prior citations on the KNB metacat of the form:
https://knb.ecoinformatics.or...
Matt Jones

05/02/2014

04:39 PM Revision 8763 (metacat): simplify lookup for classes and orcid. remove the "random" annotation code branches -- just too confusing to look at those bogus classes especially now that we have "real" generated annotations.
ben leinfelder

04/30/2014

03:47 PM Revision 8762 (metacat): add 'test' for indexing annotations without actually storing the RDF of the generated annotation.
ben leinfelder
03:46 PM Revision 8761 (metacat): only allow multiple values for multi-valued fields....
ben leinfelder
02:17 PM Feature #6530 (Resolved): Create a new service to update DOI pointers
I checked in the UpdateDOI class today which has the ability to either:
-Update all DOIs for metadata with an EML na...
Lauren Walker
01:33 PM Bug #6531 (Resolved): Make sure that the MN node description wouldn't be overwritten by the default value during a Metacat upgrading
I can't reproduce the bug any more. I also looked the code and the node description shouldn't be overwritten by the d... Jing Tao
01:02 PM Revision 8760 (metacat): Add admin service to update DOI registrations by specifying a list of formatIds or DOIs, or update all.
Lauren Walker
05:21 PM Revision 8759 (metacat): use new method to override the CN URL when constructing a CNode instance. see https://redmine.dataone.org/issues/5142
ben leinfelder

04/29/2014

04:55 PM Revision 8758 (metacat): use newer httpclient library so that Jena's dependency is met - this goes all the way back to d1_common/libclient needing to pull in the newer library.
ben leinfelder
04:54 PM Revision 8757 (metacat): first pass at direct EML->semantic index method. Still produces an RDF model, but does not persist it in Metacat, only in the triplestore. Allows us to re-run without adding stale RDF to the MN store.
ben leinfelder
04:52 PM Revision 8756 (metacat): allow multivalued fields to be indexed using the "fields" pass through.
ben leinfelder
04:47 PM Revision 8755 (metacat): Remove the attribute disable from the update button if it has been submitted.
Jing Tao
03:31 PM Revision 8754 (metacat): The image which has the default values.
Jing Tao
03:13 PM Revision 8753 (metacat): Add a new screen shot which contains the cn url.
Jing Tao

04/28/2014

04:54 PM Revision 8752 (metacat): Localized the file which doesn't have the bean for dataUrl.
Jing Tao
03:38 PM Revision 8751 (metacat): Add the cn url.
Jing Tao
03:37 PM Revision 8750 (metacat): Add the text field for the cn url.
Jing Tao
03:30 PM Revision 8749 (metacat): Store the cn url in the backup.
Jing Tao

04/25/2014

02:25 PM Bug #6542 (Closed): Fix MNodeService.systemMetadataChanged() to be asynchronous
The DataONE MNWebTester will at times show failures against Metacat MNs for calls to MNAuthorization.systemMetadataCh... Chris Jones

04/24/2014

04:20 PM Bug #6517 (Closed): Sanparks FGDC upload does not accept data files
Switched to use Apache's FileUpload library and can now handle the chunked streaming uploads. Added a test for this s... ben leinfelder
01:28 PM Revision 8748 (metacat): switch to use FIleUpload instead of O'Reilly COS library for handling chunked file uploads. https://projects.ecoinformatics.org/ecoinfo/issues/6517
ben leinfelder
01:26 PM Revision 8747 (metacat): forgot to check in the actual class: first pass at allowing admins to update DOI registration. This only acts on EML objects at the moment and is meant to illustrate one mechanism for updating the DOIs. https://projects.ecoinformatics.org/ecoinfo/issues/6530
ben leinfelder
11:50 AM Feature #6512: Add brief explanation to Metacat docs for using custom map markers in a custom theme
Technically this is a part of the metacat project Lauren Walker
11:49 AM Task #6532 (Closed): Explain different metacat and CN endpoints in the MetacatUI docs
Add a section to the Metacat documentation that explains how to create a new AppModel for pointing to a custom endpoi... Lauren Walker
11:22 AM Bug #6531 (Resolved): Make sure that the MN node description wouldn't be overwritten by the default value during a Metacat upgrading
When a Metacat was configured as a DataONE member node, the node description and et al would be stored in the metacat... Jing Tao

04/23/2014

12:35 PM Revision 8746 (metacat): first pass at allowing admins to update DOI registration. This only acts on EML objects at the moment and is meant to illustrate one mechanism for updating the DOIs. https://projects.ecoinformatics.org/ecoinfo/issues/6530
ben leinfelder
12:18 PM Feature #6530 (Resolved): Create a new service to update DOI pointers
Add to the admin interface a way to specify a list of pids or a formatId and update the URLs associated with those DO... Lauren Walker
10:45 AM Bug #6520 (Closed): Metacat indexing the resource map prior to metadata document
Tested package upload from Morpho and the resourceMap was successfully indexed. ben leinfelder
10:20 AM Bug #6529 (Closed): Solr query used for ORE lookup in Metacat has a syntax issue
Corrected the syntax in trunk and added an additional JUnit assertion to the ORE package test that already existed. ben leinfelder
10:19 AM Revision 8745 (metacat): correct the ORE lookup query syntax and add junit assertion to check that it continues to function as expected. https://projects.ecoinformatics.org/ecoinfo/issues/6529
ben leinfelder

04/22/2014

03:39 PM Bug #6520 (In Progress): Metacat indexing the resource map prior to metadata document
Now we will submit the ORE for indexing after we are sure the metadata document has been indexed. ben leinfelder
01:31 PM Bug #6520: Metacat indexing the resource map prior to metadata document
I also saw the error when i used morpho 1.10 to insert a package with data:
[ERROR]: org.apache.solr.common.SolrExce...
Jing Tao
01:30 PM Bug #6520: Metacat indexing the resource map prior to metadata document
Actually, the localhost has the same error:
[ERROR]: Solr index doesn't have the information about the id tao.13010....
Jing Tao
03:38 PM Revision 8744 (metacat): index the ORE after we submit the metadata for indexing. https://projects.ecoinformatics.org/ecoinfo/issues/6520
ben leinfelder
03:33 PM Bug #6529: Solr query used for ORE lookup in Metacat has a syntax issue
I can see this happening on the KNB. Metacat is querying itself (solr index) to find potential OREs and seems there's... ben leinfelder
03:26 PM Bug #6529 (Closed): Solr query used for ORE lookup in Metacat has a syntax issue
I also saw the error when i used morpho 1.10 to insert a package with data:
[ERROR]: org.apache.solr.common.SolrExce...
Jing Tao
01:53 PM Bug #6516: Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
Metacat indexed a document before it wrote to db. This issue was fixed. Jing Tao
01:51 PM Bug #6518 (Resolved): Authentication service in Ecogrid only access metacat through http connection
Using the SystemUtil.getMetacatServletUrl to replace the hard-coded "http" in authenciation, put, authenticatedQuery ... Jing Tao
11:43 AM Revision 8743 (metacat): include BioPortal lookup for Entity matches using the data table description. TODO: only associate measurements to the entity observation if they apply.
ben leinfelder

04/21/2014

11:12 AM Revision 8742 (metacat): recompile with java 1.6 for compatibility with our servers.
ben leinfelder

04/19/2014

05:29 PM Revision 8741 (metacat): Remove the reference to the bean eml.fileID.
Jing Tao

04/18/2014

07:48 PM Bug #6525 (Closed): Got index already exists error when ran the db upgrade scripts from 2.2.1 to 2.4.1
When I upgraded the metacat on mn-stage-ucsb-1.test.dataone.org, I got the error:
metacat 20140417-19:33:10: [ERRO...
Jing Tao
05:22 PM Revision 8740 (metacat): use 1.5.1 tag for hudson to build metacat ui (for KNB deployment)
ben leinfelder

04/17/2014

04:18 PM Bug #6520 (Closed): Metacat indexing the resource map prior to metadata document
When I tested the metacat replication, I got the error in the remote server when i used morpho 1.10 or online regist... Jing Tao
02:19 PM Revision 8739 (metacat): Index the document after it has been inserted.
Jing Tao
02:18 PM Revision 8738 (metacat): Index the document after document is written to the db.
Jing Tao

04/16/2014

02:28 PM Revision 8737 (metacat): Use the ecogrid-1.2.3 branch which will be the next release.
Jing Tao
06:20 PM Bug #6518 (Resolved): Authentication service in Ecogrid only access metacat through http connection
In https://code.ecoinformatics.org/code/seek/trunk/projects/ecogrid/src/org/ecoinformatics/ecogrid/metacat/auth/Metac... Jing Tao

04/15/2014

04:28 PM Bug #6516: Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
Note sure. Just see the issue today. Jing Tao
04:06 PM Bug #6516: Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
This doesn't look like an Ubuntu issue - does it happen for other 10.04 hosts?
Is it just that indexing is trying ...
ben leinfelder
03:56 PM Bug #6516 (New): Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
When I use morpho 1.10 branch to insert a package into a local Metacat, which is ubuntu 14.04, the solr index works f... Jing Tao
04:03 PM Bug #6517 (Closed): Sanparks FGDC upload does not accept data files

> Hi Ben
> Soorry its me again. Im trying to upload FGDC data into dataknp and it doesnt seem to be working. If I...
ben leinfelder
09:36 AM Revision 8736 (metacat): Remove the bean named eml.fileID which used the ResolveSolrField class.
Jing Tao

04/14/2014

02:58 PM Revision 8735 (metacat): calculate geohash_3 to three places (typo)
ben leinfelder
02:55 PM Revision 8734 (metacat): use NSEW for the bounding box geohash calculation from EML - all versions
ben leinfelder
02:50 PM Revision 8733 (metacat): up the field count to 111 to include the 9 geohash fields.
ben leinfelder
02:07 PM Revision 8732 (metacat): Using 1.3.0-SNAPSHOT from d1_cn_index_processor
Peter Slaughter
02:01 PM Feature #6512 (Rejected): Add brief explanation to Metacat docs for using custom map markers in a custom theme
Since I've implemented a new way to use custom map marker and cluster images for each theme without overriding the D... Lauren Walker
01:34 PM Revision 8731 (metacat): Add fields for geohashes
Peter Slaughter
01:33 PM Revision 8730 (metacat): Add beans to support geohashes
Peter Slaughter
01:33 PM Revision 8729 (metacat): Add beans to support geohashes
Peter Slaughter

04/07/2014

01:26 PM Bug #6498 (Resolved): entryForm.js throwing errors in IE 8
Added a check for undefined and null objects in the sortTagWithAttributeName function Lauren Walker
01:25 PM Revision 8728 (metacat): Check for undefined and null elements to avoid errors in IE 8 and earlier in the registry entry form JS
Lauren Walker
 

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