Activity
From 04/10/2014 to 05/09/2014
05/09/2014
05/08/2014
- 04:25 PM Revision 8768 (metacat): process all the returned annotation suggestions until we find one that is appropriately located in the subclass hierarchy for the given superclass.
- 04:23 PM Revision 8767 (metacat): use in-memory TDB dataset for querying annotations for indexing -- this comes with the same reasoning capabilities as the directory-based one, but has the benefit of not filling the directory with triples that will not be used again. prepping for d1 AHM
05/07/2014
- 11:16 PM Revision 8766 (metacat): pass around the object file path rather than the data stream so that multiple subprocessors can index the same object and not consume the stream before it gets to the next one. In preparation for extending the assertions stored in OREs. https://projects.ecoinformatics.org/ecoinfo/issues/6548
- 11:12 PM Revision 8765 (metacat): when indexing annotations directly, just use an in-memory triple store rather than TDB since we remove each graph as it is processed (and my TDB instance would get into the multi-GB range with a few runs, even if I removed the old models)
- 10:42 AM Story #6548: Expand ORE model to allow relationships for derived datasets
- Looking at the ORE spec, this is certainly acceptable practice - they just want to make sure that there isn't any orp...
05/06/2014
- 04:22 PM Story #6548 (Closed): Expand ORE model to allow relationships for derived datasets
- Design a new model for Metacat's OREs where relationships:
- wasGeneratedBy
- derivedFrom
- used
- etc.
are ... - 02:10 PM Bug #6546 (Closed): old metacat URIs should redirect to #view service
- Metacat trunk now has the short form Metatcat read URIs redirecting to the Metacat UI #view using the looked-up pid/i...
05/05/2014
- 05:17 PM Revision 8764 (metacat): redirect "short form" metacat read URIs to the the new Metacat UI using the configured UI context. This translates the docid -> pid to use the correct identifier for the correct service. https://projects.ecoinformatics.org/ecoinfo/issues/6546
- 01:39 PM Bug #6546: old metacat URIs should redirect to #view service
- It looks like we have decided that we will redirect users to the new KNB /#view service from the /metacat/{docid} KNB...
- 11:37 AM Bug #6546: old metacat URIs should redirect to #view service
- For the perl registry, I ended up needing another Metacat servlet method to get the docid when given a pid:
https://... - 11:21 AM Bug #6546: old metacat URIs should redirect to #view service
- We could update the Metacat KNB skin with a informational message about the new KNB redesign with a link to the new K...
- 10:52 AM Bug #6546: old metacat URIs should redirect to #view service
- You are proposing a redirect from a Metacat docid to a DataONE Identifier -- these are not always the same value and ...
- 02:25 AM Bug #6546 (Resolved): old metacat URIs should redirect to #view service
- Researchers have complained that prior citations on the KNB metacat of the form:
https://knb.ecoinformatics.or...
05/02/2014
04/30/2014
- 03:47 PM Revision 8762 (metacat): add 'test' for indexing annotations without actually storing the RDF of the generated annotation.
- 03:46 PM Revision 8761 (metacat): only allow multiple values for multi-valued fields....
- 02:17 PM Feature #6530 (Resolved): Create a new service to update DOI pointers
- I checked in the UpdateDOI class today which has the ability to either:
-Update all DOIs for metadata with an EML na... - 01:33 PM Bug #6531 (Resolved): Make sure that the MN node description wouldn't be overwritten by the default value during a Metacat upgrading
- I can't reproduce the bug any more. I also looked the code and the node description shouldn't be overwritten by the d...
- 01:02 PM Revision 8760 (metacat): Add admin service to update DOI registrations by specifying a list of formatIds or DOIs, or update all.
04/29/2014
- 05:21 PM Revision 8759 (metacat): use new method to override the CN URL when constructing a CNode instance. see https://redmine.dataone.org/issues/5142
- 04:55 PM Revision 8758 (metacat): use newer httpclient library so that Jena's dependency is met - this goes all the way back to d1_common/libclient needing to pull in the newer library.
- 04:54 PM Revision 8757 (metacat): first pass at direct EML->semantic index method. Still produces an RDF model, but does not persist it in Metacat, only in the triplestore. Allows us to re-run without adding stale RDF to the MN store.
- 04:52 PM Revision 8756 (metacat): allow multivalued fields to be indexed using the "fields" pass through.
- 04:47 PM Revision 8755 (metacat): Remove the attribute disable from the update button if it has been submitted.
- 03:31 PM Revision 8754 (metacat): The image which has the default values.
- 03:13 PM Revision 8753 (metacat): Add a new screen shot which contains the cn url.
04/28/2014
- 04:54 PM Revision 8752 (metacat): Localized the file which doesn't have the bean for dataUrl.
- 03:38 PM Revision 8751 (metacat): Add the cn url.
- 03:37 PM Revision 8750 (metacat): Add the text field for the cn url.
- 03:30 PM Revision 8749 (metacat): Store the cn url in the backup.
04/25/2014
- 02:25 PM Bug #6542 (Closed): Fix MNodeService.systemMetadataChanged() to be asynchronous
- The DataONE MNWebTester will at times show failures against Metacat MNs for calls to MNAuthorization.systemMetadataCh...
04/24/2014
- 04:20 PM Bug #6517 (Closed): Sanparks FGDC upload does not accept data files
- Switched to use Apache's FileUpload library and can now handle the chunked streaming uploads. Added a test for this s...
- 01:28 PM Revision 8748 (metacat): switch to use FIleUpload instead of O'Reilly COS library for handling chunked file uploads. https://projects.ecoinformatics.org/ecoinfo/issues/6517
- 01:26 PM Revision 8747 (metacat): forgot to check in the actual class: first pass at allowing admins to update DOI registration. This only acts on EML objects at the moment and is meant to illustrate one mechanism for updating the DOIs. https://projects.ecoinformatics.org/ecoinfo/issues/6530
- 11:50 AM Feature #6512: Add brief explanation to Metacat docs for using custom map markers in a custom theme
- Technically this is a part of the metacat project
- 11:49 AM Task #6532 (Closed): Explain different metacat and CN endpoints in the MetacatUI docs
- Add a section to the Metacat documentation that explains how to create a new AppModel for pointing to a custom endpoi...
- 11:22 AM Bug #6531 (Resolved): Make sure that the MN node description wouldn't be overwritten by the default value during a Metacat upgrading
- When a Metacat was configured as a DataONE member node, the node description and et al would be stored in the metacat...
04/23/2014
- 12:35 PM Revision 8746 (metacat): first pass at allowing admins to update DOI registration. This only acts on EML objects at the moment and is meant to illustrate one mechanism for updating the DOIs. https://projects.ecoinformatics.org/ecoinfo/issues/6530
- 12:18 PM Feature #6530 (Resolved): Create a new service to update DOI pointers
- Add to the admin interface a way to specify a list of pids or a formatId and update the URLs associated with those DO...
- 10:45 AM Bug #6520 (Closed): Metacat indexing the resource map prior to metadata document
- Tested package upload from Morpho and the resourceMap was successfully indexed.
- 10:20 AM Bug #6529 (Closed): Solr query used for ORE lookup in Metacat has a syntax issue
- Corrected the syntax in trunk and added an additional JUnit assertion to the ORE package test that already existed.
- 10:19 AM Revision 8745 (metacat): correct the ORE lookup query syntax and add junit assertion to check that it continues to function as expected. https://projects.ecoinformatics.org/ecoinfo/issues/6529
04/22/2014
- 03:39 PM Bug #6520 (In Progress): Metacat indexing the resource map prior to metadata document
- Now we will submit the ORE for indexing after we are sure the metadata document has been indexed.
- 01:31 PM Bug #6520: Metacat indexing the resource map prior to metadata document
- I also saw the error when i used morpho 1.10 to insert a package with data:
[ERROR]: org.apache.solr.common.SolrExce... - 01:30 PM Bug #6520: Metacat indexing the resource map prior to metadata document
- Actually, the localhost has the same error:
[ERROR]: Solr index doesn't have the information about the id tao.13010.... - 03:38 PM Revision 8744 (metacat): index the ORE after we submit the metadata for indexing. https://projects.ecoinformatics.org/ecoinfo/issues/6520
- 03:33 PM Bug #6529: Solr query used for ORE lookup in Metacat has a syntax issue
- I can see this happening on the KNB. Metacat is querying itself (solr index) to find potential OREs and seems there's...
- 03:26 PM Bug #6529 (Closed): Solr query used for ORE lookup in Metacat has a syntax issue
- I also saw the error when i used morpho 1.10 to insert a package with data:
[ERROR]: org.apache.solr.common.SolrExce... - 01:53 PM Bug #6516: Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
- Metacat indexed a document before it wrote to db. This issue was fixed.
- 01:51 PM Bug #6518 (Resolved): Authentication service in Ecogrid only access metacat through http connection
- Using the SystemUtil.getMetacatServletUrl to replace the hard-coded "http" in authenciation, put, authenticatedQuery ...
- 11:43 AM Revision 8743 (metacat): include BioPortal lookup for Entity matches using the data table description. TODO: only associate measurements to the entity observation if they apply.
04/21/2014
04/18/2014
04/17/2014
- 07:48 PM Bug #6525 (Closed): Got index already exists error when ran the db upgrade scripts from 2.2.1 to 2.4.1
- When I upgraded the metacat on mn-stage-ucsb-1.test.dataone.org, I got the error:
metacat 20140417-19:33:10: [ERRO... - 05:22 PM Revision 8740 (metacat): use 1.5.1 tag for hudson to build metacat ui (for KNB deployment)
- 04:18 PM Bug #6520 (Closed): Metacat indexing the resource map prior to metadata document
- When I tested the metacat replication, I got the error in the remote server when i used morpho 1.10 or online regist...
- 02:19 PM Revision 8739 (metacat): Index the document after it has been inserted.
- 02:18 PM Revision 8738 (metacat): Index the document after document is written to the db.
04/16/2014
04/15/2014
- 06:20 PM Bug #6518 (Resolved): Authentication service in Ecogrid only access metacat through http connection
- In https://code.ecoinformatics.org/code/seek/trunk/projects/ecogrid/src/org/ecoinformatics/ecogrid/metacat/auth/Metac...
- 04:28 PM Bug #6516: Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
- Note sure. Just see the issue today.
- 04:06 PM Bug #6516: Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
- This doesn't look like an Ubuntu issue - does it happen for other 10.04 hosts?
Is it just that indexing is trying ... - 03:56 PM Bug #6516 (New): Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
- When I use morpho 1.10 branch to insert a package into a local Metacat, which is ubuntu 14.04, the solr index works f...
- 04:03 PM Bug #6517 (Closed): Sanparks FGDC upload does not accept data files
> Hi Ben
> Soorry its me again. Im trying to upload FGDC data into dataknp and it doesnt seem to be working. If I...- 09:36 AM Revision 8736 (metacat): Remove the bean named eml.fileID which used the ResolveSolrField class.
04/14/2014
- 02:58 PM Revision 8735 (metacat): calculate geohash_3 to three places (typo)
- 02:55 PM Revision 8734 (metacat): use NSEW for the bounding box geohash calculation from EML - all versions
- 02:50 PM Revision 8733 (metacat): up the field count to 111 to include the 9 geohash fields.
- 02:07 PM Revision 8732 (metacat): Using 1.3.0-SNAPSHOT from d1_cn_index_processor
- 02:01 PM Feature #6512 (Rejected): Add brief explanation to Metacat docs for using custom map markers in a custom theme
- Since I've implemented a new way to use custom map marker and cluster images for each theme without overriding the D...
- 01:34 PM Revision 8731 (metacat): Add fields for geohashes
- 01:33 PM Revision 8730 (metacat): Add beans to support geohashes
- 01:33 PM Revision 8729 (metacat): Add beans to support geohashes
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