Use the EncodingUtilities method to decode a string.
Add the view service.
Add the code to handle query and view service.
Add the code to read the MNPackage configuration.
Add the MNPackage configuration.
Remove the duplicated alternate identifier section.
It seemed to have been caused by a branch code merge.
Add support for alternateIdentifier system in EML stylesheet
Fix a bug in the conditional for the EML XSLT for alternateIdentifiers
Add the release note for 2.8.4
Add the script to upgrade db to 2.8.4
Add the script to upgrade the db version to 2.8.4.
Use MetacatUI 1.14.2 release.
In the delete method, if we got not MdcDocNotFound exception, we will continue to delete the system metadata.
Add the code to add the ldap group information for the given user.
Add a new method to get all groups for a given user.
Make a debug statement clearer.
Display the dc:source field from dublin core metadata in the onedcx-common stylesheet
Modified the query to find the previous version of the ore document in the publish method.
Add a new bug was fixed in 2.8.3
Add the release node for 2.8.3
Change the test metacat deployment directory.
Fixed a bug that the eml object wasn't changed checksum but its content was modified in the publish method.
Make the checksum match during the create method.
Add the code to reget the object input stream after generating the system metadata. Otherwise, the checksum will be wrong.
Exclude the MockReplicationMNode class in the test method.
Add the script to update the version to 2.8.3
Add the script which update the db to 2.8.3.
Add the script to update db.
Add the db upgrade from 2.8.1 to 2.8.2
Add the code to remove the pid from the identifier table if the update method failed.
Add tests to test the miss-matched checkup in the update method.
Reget the object inputstream in order to calculate the correct checksum.
Add the checksum as the parameter to the method write.
Add the code to computer the checksum.
Add the checksum parameter to the write method.
Move the checking if the checksum exists into the create method.
Add the checksum parameter to the method DocumentImple.write.
Add a method to test the miss-matched checksum for creating a metadata object.
Add a new test method to test the miss-matched checksum for the data object.
Add the checksum as a parameter to the method handleInsertOrUpdate.
Add the checksum parameter to the handleInsertorUpdate method.
Add the checksum parameter to the handleInsertAndUpdate method.
Change the signature of the method handleInsertAndUpdate.
Add code to check the check sum by the DigestOutputStream.
Removed the duplicated code to check the checksum in the replicate method since the method D1Node.create, which is called by the replicate method, has the mechanism.
Revised the method for testing replication. It did nothing but does test the replication between the mock mn and the local host.
Add the replication source node into the node locator.
Add some methods to support the replicate.
Add a mock mn node as the source node during a replication operation.
Add a integration test.
Add two properties will be used in the dataone replication test.
Add some debug information.
Change MetacatHandler.generateOutputName() to use the SystemMetadata.fileName value when it is available. Needs testing.
refs https://projects.ecoinformatics.org/ecoinfo/issues/7187
Define location of the AWS binary so the tool works under CRON.
Modified backup script to improve efficiency.
Now, lists of metadata and data files that were last backed up is stored in the /var/metacat/metacat-backup folder, andthese are diffed with the current file lists to discover new files. These are then copied to AWS S3. The AWS...
Add the release note for the 2.8.2 version.
The metacatui version was changed to 1.14.1
Add the code to filter out the pids with white spaces in the query.
Add backup script to copy files to Amazon S3.
Call the method TripleStoreService.destroy to delete the dataset.
Disable indexing of 'prov_hasSources' field
Fix problem with prov_hasSources not being indexed
Add check in iindex unit test for 'prov_hasDerivations' field
Fix problem where 'prov_hasDerivations' field not being indexed (metacat issue 7176)
Make sure it is same as branch 2.8 except the mdq stuff
Still use syncFailed.getPid to get identifier in the syncFailed method.
Fixed typos in the vairable name.
In the synchronizationFailed method, use syncExcpetion.getIdentifier method to try before the obsoleted method getPid.
Change the version to 2.9.0
change the version to 2.9.0. Change the version of the d1_denpendency to 2.4.
Change the version to 2.9.0. Change the version of the d1 dependency to 2.4.
Modify version to 2.9.0
Add the script to upgrade the db to 2.9.0
Move a statement e.printStactTrace to the logMetacat.error method.
Add the 'Collaborator' role to the list of roles in the EML Registry CGI.
refs https://github.com/NCEAS/metacatui/issues/78
In the expandRightHolder method, we don't use the parameter count=-1 to query the cn. Now we use count=200 and will use the page query to query again if it is necessary.
Add the debug statement.
Remove extra <table> HTML element that was causing rendering issues with the enumerated domain template
Add the method name and line number in the statment.
Add the method name and line number in the statement.
Fix broken links in taxonomy section of registry guide
Fix a typo that was preventing dateTime attributes from rendering fully
Add more debug statement on cn.create method.
If EML physical/size/@unit isn't specified, assume its bytes
Previously, if the unit attribute wasn't set on an EML physical sizeelement, the size showed up as just the number with no units. The EMLspec says that, if unit is omitted, bytes is the assumed unit.
include multiple creators for DOI test
add test to check if creator value is correctly being extracted from eml when registering with EZID. https://github.nceas.ucsb.edu/KNB/arctic-data/issues/143
extract EML creator[s] and use those names or organizations when registering DOI with EZID. https://github.nceas.ucsb.edu/KNB/arctic-data/issues/143
Add a test method to test the method check if a local id is in the xml_revision table.
In the archive method, add a new mechanism to check if the local id is in the xml_revision table if it is not in the xml_documents table.
Add a new method to determine if a docid and rev is in the xml_revision table.
Add more permission tests on the archive method.
Give the users having change-permission to archive an object which is from a v1 node.
Check the change of the access rules on data objects only when we need to write access rules base on the access part of the eml document.
- Clean up isoroot selectors and comments. Use relative xpaths when possible- Clean up the output of the ex module- Misc whitespace/formatting fixes
Ensure XML run response from quality engine. Use mock http request to ensure correct save behavior of the resulting run. https://projects.ecoinformatics.org/ecoinfo/issues/7171 and https://github.com/NCEAS/mdqengine/issues/73
Trigger MDQ when inserting or updating metadata documents. https://projects.ecoinformatics.org/ecoinfo/issues/7171 and https://github.com/NCEAS/mdqengine/issues/73