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From 01/05/2003 to 02/03/2003

01/31/2003

03:15 PM Bug #954: cache should not expunge temp objects that are needed later in an analysis
The cache now has funtionality to expunge items after a certain amount of time.
The expunge can be cancelled before ...
Chad Berkley
11:20 AM Bug #979 (Resolved): pipelines that mix engines can't parse physical file
When a pipeline contains steps that use various different AEPlugins, the output
from one plugin needs to be parsed a...
Matt Jones
09:58 AM Bug #970: stop using table attribute names as variable names
Fixed Rich Williams

01/29/2003

04:11 PM Bug #977 (Resolved): dtd validation bug in xsltPlugin
sometimes the xsltPlugin tries to find the dtd for a document. when it fails,
the transformation is not completed. ...
Chad Berkley
04:01 PM Bug #975: monarch needs to be able to handle files not on metacat
There is now an action called insertcacheitem which allows the multipart encoded
uploading of files to monarch. It c...
Chad Berkley
09:31 AM Bug #975: monarch needs to be able to handle files not on metacat
*** Bug 974 has been marked as a duplicate of this bug. *** Chad Berkley
11:32 AM Bug #976 (Resolved): create friendly error messages
The exception handling in MonarchServlet needs to be made a bit more user
friendly. As it is the error messages are...
Chad Berkley
09:33 AM Bug #517: implement plugins for SAS, Matlab, R
Need to fix the matlab plugin so that matlab exits after execution no matter
what the code is in the stepgroup. I do...
Chad Berkley
09:31 AM Bug #974: monarch needs to be able to handle files not on metacat
somehow got two bugs that are the same
*** This bug has been marked as a duplicate of 975 ***
Chad Berkley
09:30 AM Bug #943: design xslt plugin for monarch
the xslt plugin now works. it needs to have the interface changed a bit to
really work well but the plugin itself wo...
Chad Berkley

01/28/2003

04:10 PM Bug #975 (Resolved): monarch needs to be able to handle files not on metacat
Need to create an interface to handle datasets and streams that are not on
metacat. Right now, monarch requires tha...
Chad Berkley
04:09 PM Bug #974 (Resolved): monarch needs to be able to handle files not on metacat
Need to create an interface to handle datasets and streams that are not on
metacat. Right now, monarch requires tha...
Chad Berkley

01/24/2003

10:13 AM Bug #970 (Resolved): stop using table attribute names as variable names
Currently, table attribute names are used as variable names. There are two
problem with this: 1) there is no synta...
Rich Williams

01/23/2003

02:44 PM Bug #962 (In Progress): Allow a single step to be a pipeline
Allow a single step to be a pipeline - the steps inputs and outputs map
directly to the pipelines inputs and outputs.
Rich Williams
09:04 AM Bug #954: cache should not expunge temp objects that are needed later in an analysis
The cache manager now has two parameter settings which are set in the config.xml
file (replaced by ant in build.xml)....
Chad Berkley

01/22/2003

11:55 AM Bug #958 (In Progress): When executing a StepGroup, only load required datasets and scalars
In each version of generateInputCode (there's one for each script language),
only generate code to load the data se...
Rich Williams
08:33 AM Bug #947: develop pipeline/step library for MARINE QA tests
*** Bug 948 has been marked as a duplicate of this bug. *** Rich Williams
08:33 AM Bug #948: develop pipeline/step library for MARINE QA tests
duplicate of 947
*** This bug has been marked as a duplicate of 947 ***
Rich Williams

01/21/2003

01:53 PM Bug #957: release monarch 1.0.0alpha1
released monarch 1.0.0alpha1 as a minor release on 1/21/03. It will not be put
on the web site, but rather, only tag...
Chad Berkley
01:52 PM Bug #957 (Resolved): release monarch 1.0.0alpha1
Chad Berkley
01:50 PM Bug #954: cache should not expunge temp objects that are needed later in an analysis
the methods expungeNow, allowExpunge and neverExpunge are now implemented in the
cache. It occured to me while doing...
Chad Berkley

01/17/2003

09:24 AM Bug #954: cache should not expunge temp objects that are needed later in an analysis
callers of the cache need to be able to control the fate of objects submitted.
there needs to be expungeNow(cacheid)...
Chad Berkley
09:20 AM Bug #946: change monarch to get steps from metacat
monarch can now be configured at install time to either get pipelines and steps
from metacat or off disk. there is a...
Chad Berkley

01/15/2003

03:02 PM Bug #955 (In Progress): need to handle multiple datasets as input to a pipeline
monarch needs to be able to handle multiple datasets as input to a pipeline.
this needs to be looked into.
Chad Berkley
03:01 PM Bug #954 (Resolved): cache should not expunge temp objects that are needed later in an analysis
need to make sure that the cache does not expunge any temporary data that is
stored by a previous stepgroup in a pip...
Chad Berkley
02:59 PM Bug #953 (Resolved): lock down security issues
monarch is able to execute arbitrary code on so the security issues need to be
looked into. at a minimum, we need t...
Chad Berkley
02:57 PM Bug #952 (In Progress): record data bindings in a recoverable xml document
monarch should be able to record data bindings into an xml document so that an
analysis could be "hardwired" later w...
Chad Berkley
02:55 PM Bug #951 (Resolved): syntax change in the inputs
change the syntax for the input maps in the pipeline spec so that they are more
like the MOML syntax. matt, can you...
Chad Berkley

01/14/2003

11:23 AM Bug #948 (Resolved): develop pipeline/step library for MARINE QA tests
We need a small but compelling library of pipelines and steps that can be used
for QA analysis in MARINE. This test...
Matt Jones
11:23 AM Bug #947 (In Progress): develop pipeline/step library for MARINE QA tests
We need a small but compelling library of pipelines and steps that can be used
for QA analysis in MARINE. This test...
Matt Jones

01/13/2003

03:05 PM Bug #946 (Resolved): change monarch to get steps from metacat
currently monarch is getting pipelines from metacat but it gets the steps from a
directory on the filesystem. that ...
Chad Berkley
02:32 PM Bug #516: Examine Ptolemy architecture for adaptation to Monarch
retargeted to alpha2 Chad Berkley
02:31 PM Bug #521: design and implement monarch servlet/web service
a simple one is mostly done. there are two servlets. one is the xml
programmatic interface to monarch. the other i...
Chad Berkley
02:30 PM Bug #520: evaluate eml packages and dataItemCollections
dataItemCollection has been removed in favor of a caching system. Chad Berkley
02:30 PM Bug #519: version control and storage of steps/pipelines/output
done. using metacat in prealpha 1 Chad Berkley
02:29 PM Bug #518: develop useful, realistic steps and pipelines for testing
this bug, as written is done. We still need to build a bigger library of steps
and pipelines.
Chad Berkley
02:29 PM Bug #517: implement plugins for SAS, Matlab, R
the SAS one is done and the Matlab one is mostly done. will have an R plugin
shortly.
Chad Berkley
02:28 PM Bug #515: redesign pipeline specification and model
done in new monarch design Chad Berkley
02:28 PM Bug #514: design step specification and model
done in new monarch desing Chad Berkley
02:27 PM Bug #513: plugin architecture for metadata standards
this is done in the new monarch design. Chad Berkley
02:27 PM Bug #322: "wireframe" interface for configuring data/analysis pipelines
retarget to alpha 2 Chad Berkley
02:26 PM Bug #321: morpho plugin for feeding data to analytical engine
retarget to alpha 2 Chad Berkley
02:26 PM Bug #311: feed data from metacat to QA engine
this bug has been taken into condideration in the new design of monarch. Chad Berkley
02:24 PM Bug #945 (In Progress): investigate semantic additions to monarch
we need to investigate possible ways to add semantic mediation to monarch and
then implement it. This includes vari...
Chad Berkley
02:19 PM Bug #944 (In Progress): write eml -> nbii xsl sheet
need to write an xsl stylesheet to convert eml to nbii. this will be used to
fulfill a marine requirement to do so....
Chad Berkley
02:17 PM Bug #943 (Resolved): design xslt plugin for monarch
designe an xslt engine plugin for monarch. The plugin would execute a pipeline
with an xsl stylesheet and an xml do...
Chad Berkley

01/10/2003

09:58 AM Bug #226: redesign of QA engine
Redesign is done, and large parts of it are implemented. See CVS
monarch/docs/dev for details of the new design. SH...
Matt Jones
09:56 AM Bug #228: Initial design of data integration engine
Probably postponed indefinitely. Matt Jones
 

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